View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10163A_low_51 (Length: 339)
Name: NF10163A_low_51
Description: NF10163A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10163A_low_51 |
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Alignment Details
Target: chr5 (Bit Score: 282; Significance: 1e-158; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 22 - 323
Target Start/End: Complemental strand, 35489919 - 35489618
Alignment:
| Q |
22 |
ggaagtatgattgctatcaaacttggagttagcggtgaaggctcgtttacaaaaaccgaagctgatcttctcttagtctttatatgtctatatgttgcgg |
121 |
Q |
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| T |
35489919 |
ggaagtatgattgctatcaaacttggagttagcggtgaaggctcgtttacaaaaactgaagctgatcttctcttagtctttatatgtctatatgttgcgg |
35489820 |
T |
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| Q |
122 |
catttgcatggtcttggggtgcgttgggatggttagttcctagtgaaatatgctctcttgaagtccgatctgcaggtcaagctaccaatgttgcagcgaa |
221 |
Q |
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| T |
35489819 |
catttgcatggtcttggggtgcgctgggatggttagttcccagtgaaatatgctctcttgaagtccgatctgcaggtcaagctaccaatgttgcagtgaa |
35489720 |
T |
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| Q |
222 |
catgttgttcacctttatcattgctcaagtttttcttaccatgctttgtcacttgaagtttggacttttcttcttctttgctggctttgtgctcatgatg |
321 |
Q |
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| T |
35489719 |
catgttgttcacctttatcattgctcaagtttttcttaccatgctttgtcacttgaagtttggacttttcttcttctttgctggctttgtgctcatcatg |
35489620 |
T |
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| Q |
322 |
tc |
323 |
Q |
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| T |
35489619 |
tc |
35489618 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 231 - 285
Target Start/End: Complemental strand, 18233891 - 18233837
Alignment:
| Q |
231 |
cacctttatcattgctcaagtttttcttaccatgctttgtcacttgaagtttgga |
285 |
Q |
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| T |
18233891 |
cacctttatcattgctcaaattttcactacaatgctttgtcacatgaagtttgga |
18233837 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 111; Significance: 5e-56; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 78 - 312
Target Start/End: Original strand, 14233080 - 14233314
Alignment:
| Q |
78 |
cgaagctgatcttctcttagtctttatatgtctatatgttgcggcatttgcatggtcttggggtgcgttgggatggttagttcctagtgaaatatgctct |
177 |
Q |
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|||||| || |||||||| ||||||| ||| |||||||||||||||||||||||||||||| | ||||| |||||||| ||||||||||||||| || |
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| T |
14233080 |
cgaagccgaccttctcttgttctttatttgtgcatatgttgcggcatttgcatggtcttggggaccattgggttggttagtgcctagtgaaatatgcgct |
14233179 |
T |
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| Q |
178 |
cttgaagtccgatctgcaggtcaagctaccaatgttgcagcgaacatgttgttcacctttatcattgctcaagtttttcttaccatgctttgtcacttga |
277 |
Q |
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| T |
14233180 |
ctagaggttcgaccagcaggtcaagctataaatgttgcggtgaacatgttcttcacatttatgattgctcaagtcttcctaaccatgctttgtcacttga |
14233279 |
T |
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| Q |
278 |
agtttggacttttcttcttctttgctggctttgtg |
312 |
Q |
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| T |
14233280 |
agtttggccttttctttttctttgctggttttgtg |
14233314 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 78 - 312
Target Start/End: Original strand, 14242754 - 14242988
Alignment:
| Q |
78 |
cgaagctgatcttctcttagtctttatatgtctatatgttgcggcatttgcatggtcttggggtgcgttgggatggttagttcctagtgaaatatgctct |
177 |
Q |
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|||||| || |||||||| ||||||| ||| |||||||||||||||||||||||||||||| | ||||| |||||||| ||||||||| ||||| || |
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| T |
14242754 |
cgaagccgaccttctcttgttctttatttgtgcatatgttgcggcatttgcatggtcttggggaccattgggttggttagtgcctagtgaagtatgcgct |
14242853 |
T |
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| Q |
178 |
cttgaagtccgatctgcaggtcaagctaccaatgttgcagcgaacatgttgttcacctttatcattgctcaagtttttcttaccatgctttgtcacttga |
277 |
Q |
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| T |
14242854 |
ctagaggttcgaccagcaggtcaagctataaatgttgcggtgaacatgttcttcacatttatgattgctcaagtcttcctaaccatgctttgtcacttga |
14242953 |
T |
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| Q |
278 |
agtttggacttttcttcttctttgctggctttgtg |
312 |
Q |
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||||||| |||||||| ||||||||||| |||||| |
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| T |
14242954 |
agtttggccttttctttttctttgctggttttgtg |
14242988 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 79 - 279
Target Start/End: Original strand, 51580515 - 51580714
Alignment:
| Q |
79 |
gaagctgatcttctcttagtctttatatgtctatatgttgcggcatttgcatggtcttggggtgcgttgggatggttagttcctagtgaaatatgctctc |
178 |
Q |
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||||| || ||||| ||| |||||||| || |||||||||||||||||| |||||||||| || | || |||| | || |||||||| || |||| |
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| T |
51580515 |
gaagccgagcttcttttattctttataagtgcatatgttgcggcatttgctgggtcttggggcccgctaggttggtcgga-ccaagtgaaatttgttctc |
51580613 |
T |
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| Q |
179 |
ttgaagtccgatctgcaggtcaagctaccaatgttgcagcgaacatgttgttcacctttatcattgctcaagtttttcttaccatgctttgtcacttgaa |
278 |
Q |
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|||| || |||||||||||||||||| ||||||||| | ||||||||| ||||| ||| | ||||||||||||| || | |||||||||||||||||| |
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| T |
51580614 |
ttgaggtttgatctgcaggtcaagctatcaatgttgccgtgaacatgttattcacatttgttgttgctcaagttttcctcaacatgctttgtcacttgaa |
51580713 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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