View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10163A_low_52 (Length: 338)
Name: NF10163A_low_52
Description: NF10163A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10163A_low_52 |
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Alignment Details
Target: chr4 (Bit Score: 288; Significance: 1e-161; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 18 - 332
Target Start/End: Complemental strand, 37180316 - 37179999
Alignment:
| Q |
18 |
catcaaactatcaatggcaatattcaaatccttcatcacaactttacttctagttgtgacaatatcaaacatgagcctagaagctcgtcatcttttgcaa |
117 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
37180316 |
catcaaactatcaatggcaatattcaaatccttcatcacaactttacttctagttgtgacaatatcaaacatgagcctagaagctcgccatcttttgcaa |
37180217 |
T |
|
| Q |
118 |
acaac---acaaccaaatttaccaaccattcccactttaccaaaaccaacaacgtcaccacctttaccttcaattccaaatatgcctcaaggaaatcttc |
214 |
Q |
| |
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|| || ||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37180216 |
actaccacacaaccaaatttaccaaccattcccactttaccaaaaccaacaacattaccacctttaccttcaattccaaatatgcctcaaggaaatcttc |
37180117 |
T |
|
| Q |
215 |
ctccattgcctactatcccttctatgcctaaactcactatgccaccacttccaagtcttcctacaaatattccaacaattccatctctcaacattccacc |
314 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37180116 |
ctccattgcctactatcccttctatgcctaaactcactatgccaccacttccaagtcttcctacaaatattccaacaattccatctctcaacattccacc |
37180017 |
T |
|
| Q |
315 |
attgccagcagtcacttc |
332 |
Q |
| |
|
|||||||||||||||||| |
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|
| T |
37180016 |
attgccagcagtcacttc |
37179999 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 18 - 332
Target Start/End: Original strand, 37189538 - 37189855
Alignment:
| Q |
18 |
catcaaactatcaatggcaatattcaaatccttcatcacaactttacttctagttgtgacaatatcaaacatgagcctagaagctcgtcatcttttgcaa |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
37189538 |
catcaaactatcaatggcaatattcaaatccttgatcacaactttacttctagttgtgacaatatcaaacatgagcctagaagctcgccatcttttgcaa |
37189637 |
T |
|
| Q |
118 |
acaac---acaaccaaatttaccaaccattcccactttaccaaaaccaacaacgtcaccacctttaccttcaattccaaatatgcctcaaggaaatcttc |
214 |
Q |
| |
|
|| || ||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37189638 |
actaccacacaaccaaatttaccaaccattcccactttaccaaaaccaacaacattaccacctttaccttcaattccaaatatgcctcaaggaaatcttc |
37189737 |
T |
|
| Q |
215 |
ctccattgcctactatcccttctatgcctaaactcactatgccaccacttccaagtcttcctacaaatattccaacaattccatctctcaacattccacc |
314 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37189738 |
ctccattgcctactatcccttctatgcctaaactcactatgccaccacttccaagtcttcctacaaatattccaacaattccatctctcaacattccacc |
37189837 |
T |
|
| Q |
315 |
attgccagcagtcacttc |
332 |
Q |
| |
|
|||||||||||||||||| |
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|
| T |
37189838 |
attgccagcagtcacttc |
37189855 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 42 - 332
Target Start/End: Original strand, 37181445 - 37181738
Alignment:
| Q |
42 |
caaatccttcatcacaactttacttctagttgtgacaatatcaaacatgagcctagaagctcgtcatcttttgcaaacaac---acaaccaaatttacca |
138 |
Q |
| |
|
|||||||||||| ||||||||||||| ||||| ||||| |||| |||||||||||||||||| |||||||||||||| || |||||||||||||||| |
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| T |
37181445 |
caaatccttcattgcaactttacttcttgttgtcacaatgtcaagcatgagcctagaagctcgccatcttttgcaaactaccacacaaccaaatttacca |
37181544 |
T |
|
| Q |
139 |
accattcccactttaccaaaaccaacaacgtcaccacctttaccttcaattccaaatatgcctcaaggaaatcttcctccattgcctactatcccttcta |
238 |
Q |
| |
|
|||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37181545 |
gccattcccactttaccaaaaccaacaacattaccacctttaccttcaattccaaatatgcctcaaggaaatcttcctccattgcctactatcccttcta |
37181644 |
T |
|
| Q |
239 |
tgcctaaactcactatgccaccacttccaagtcttcctacaaatattccaacaattccatctctcaacattccaccattgccagcagtcacttc |
332 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
37181645 |
tgcctaaactcactatgccaccacttccaagtcttcctacaaatattccaacaattccatctctcaacattccaccattgccagcagtcacttc |
37181738 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 26 - 332
Target Start/End: Complemental strand, 37187988 - 37187682
Alignment:
| Q |
26 |
tatcaatggcaatattcaaatccttcatcacaactttacttctagttgtgacaatatcaaacatgagcctagaagctcgtcatcttttgcaaacaacaca |
125 |
Q |
| |
|
||||||||||| | |||||||||||||| | |||||||||| |||||||| || |||| |||||||||||||||||| |||||||| || |||||||| |
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| T |
37187988 |
tatcaatggcatcaagcaaatccttcatcatagctttacttcttgttgtgaccatgtcaagcatgagcctagaagctcgccatcttttacagacaacaca |
37187889 |
T |
|
| Q |
126 |
accaaatttaccaaccattcccactttaccaaaaccaacaacgtcaccacctttaccttcaattccaaatatgcctcaaggaaatcttcctccattgcct |
225 |
Q |
| |
|
||||||||| || | |||||||| ||||||||| ||||| || | ||||||||| ||||||||||||||||||||||| ||||||||||||||||||||| |
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|
| T |
37187888 |
accaaatttgcctaacattcccaatttaccaaatccaactacattaccacctttgccttcaattccaaatatgcctcagggaaatcttcctccattgcct |
37187789 |
T |
|
| Q |
226 |
actatcccttctatgcctaaactcactatgccaccacttccaagtcttcctacaaatattccaacaattccatctctcaacattccaccattgccagcag |
325 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| || ||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
37187788 |
actatcccttctatgcctaaactcactatgccaccacttcctagctttcctacaaattttccaacaattccatctctcaacattccaccattgccagcag |
37187689 |
T |
|
| Q |
326 |
tcacttc |
332 |
Q |
| |
|
|||||| |
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|
| T |
37187688 |
ccacttc |
37187682 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 181 - 229
Target Start/End: Complemental strand, 38704268 - 38704220
Alignment:
| Q |
181 |
ccttcaattccaaatatgcctcaaggaaatcttcctccattgcctacta |
229 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38704268 |
ccttcaattccaaatatgcctcaaggaaatcttcctccattgcctacta |
38704220 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 42 - 123
Target Start/End: Complemental strand, 38704369 - 38704284
Alignment:
| Q |
42 |
caaatccttcatcacaactt----tacttctagttgtgacaatatcaaacatgagcctagaagctcgtcatcttttgcaaacaaca |
123 |
Q |
| |
|
||||||||| |||||||||| ||||||| ||||||||||| |||| ||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
38704369 |
caaatccttaatcacaacttaatttacttcttgttgtgacaatgtcaagcatgaacctagaagctcgtcatcttttgcaaacaaca |
38704284 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 69; Significance: 6e-31; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 199 - 317
Target Start/End: Original strand, 27096701 - 27096816
Alignment:
| Q |
199 |
cctcaaggaaatcttcctccattgcctactatcccttctatgcctaaactcactatgccaccacttccaagtcttcctacaaatattccaacaattccat |
298 |
Q |
| |
|
|||||||| ||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||| || ||||||| || ||||||| |||||| |
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|
| T |
27096701 |
cctcaaggtaatgttcctccattgcctactatcccttctatgcctaagctcactatgccaccacttcctagcattcctaccaa---tccaacacttccat |
27096797 |
T |
|
| Q |
299 |
ctctcaacattccaccatt |
317 |
Q |
| |
|
|||||||| |||||||||| |
|
|
| T |
27096798 |
ctctcaactttccaccatt |
27096816 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 199 - 317
Target Start/End: Original strand, 27103004 - 27103119
Alignment:
| Q |
199 |
cctcaaggaaatcttcctccattgcctactatcccttctatgcctaaactcactatgccaccacttccaagtcttcctacaaatattccaacaattccat |
298 |
Q |
| |
|
|||||||| ||| |||||||||||||||| |||||||| ||||||| |||||||||||||||||||| || |||| || || ||||||| |||||| |
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|
| T |
27103004 |
cctcaaggtaatgttcctccattgcctaccatcccttcagtgcctaagctcactatgccaccacttcctagcattccaaccaa---tccaacacttccat |
27103100 |
T |
|
| Q |
299 |
ctctcaacattccaccatt |
317 |
Q |
| |
|
|||||||| |||||||||| |
|
|
| T |
27103101 |
ctctcaactttccaccatt |
27103119 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 82 - 165
Target Start/End: Original strand, 27102812 - 27102898
Alignment:
| Q |
82 |
tcaaacatgagcctagaagctcgtcatcttttgcaaacaac---acaaccaaatttaccaaccattcccactttaccaaaaccaaca |
165 |
Q |
| |
|
|||||||||| |||||||||||| | |||||||||||||| |||||| ||||| |||| ||||||||||||||||||||||||| |
|
|
| T |
27102812 |
tcaaacatgaacctagaagctcgcaaccttttgcaaacaactacacaacccaatttgccaagcattcccactttaccaaaaccaaca |
27102898 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 82 - 165
Target Start/End: Original strand, 27096527 - 27096613
Alignment:
| Q |
82 |
tcaaacatgagcctagaagctcgtcatcttttgcaaaca---acacaaccaaatttaccaaccattcccactttaccaaaaccaaca |
165 |
Q |
| |
|
||||||||||||||||||||||| | |||||||||||| |||||||| ||||| |||| |||||||||||| ||||| |||||| |
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|
| T |
27096527 |
tcaaacatgagcctagaagctcgaaaccttttgcaaacaaccacacaacccaatttgccaaacattcccactttgccaaatccaaca |
27096613 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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