View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10163A_low_54 (Length: 328)
Name: NF10163A_low_54
Description: NF10163A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10163A_low_54 |
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| [»] chr4 (4 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 300; Significance: 1e-169; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 300; E-Value: 1e-169
Query Start/End: Original strand, 9 - 328
Target Start/End: Complemental strand, 2838821 - 2838502
Alignment:
| Q |
9 |
atggacatcagacaatatgagaggttaattgaagaaagagctgcttatgatgaagaagagatgaatattatgcaagagattcttataagaagggaaaagg |
108 |
Q |
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| T |
2838821 |
atggaaatgagacaatatgagaggttaattgaagaaagagctgcttatgatgaagaagagatgaatattatgcaagagattcttataagaagggaaaagg |
2838722 |
T |
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| Q |
109 |
agaatctctttttggaaaaggaatttgaaagttataggccatcactttcatttgaaacttgtgatgatccatcacaggcagaaagcatcgtatcaaatgt |
208 |
Q |
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| T |
2838721 |
agaatctctttttggaaaaggaacttgaaagttataggccatcactttcatttgaaacttgtgatgatccatcacaggcagaaagcatcgtatcaaatgt |
2838622 |
T |
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| Q |
209 |
gaagaaagattgcgctgatgcagaccatggagaagaggtggaggaaaacagtcaacacaaggatcaagtgcgcaatgatatgcatagatccttttatgat |
308 |
Q |
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| T |
2838621 |
gaagaaagattgcgctgatgcagaccatggagaagaggtggaggaaaacagtcaacacaaggatcaagcgtgcaatgatatgcatagatccttttatgat |
2838522 |
T |
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| Q |
309 |
actgagtctgatgttcttga |
328 |
Q |
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| T |
2838521 |
actgagtctgatgttcttga |
2838502 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 9 - 147
Target Start/End: Complemental strand, 2842922 - 2842784
Alignment:
| Q |
9 |
atggacatcagacaatatgagaggttaattgaagaaagagctgcttatgatgaagaagagatgaatattatgcaagagattcttataagaagggaaaagg |
108 |
Q |
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| T |
2842922 |
atggaaatgagacaatacgagaggttaattgaagaaagagtttcttatgatgaagaagagatgaatattatgcaagagattcttataagaagggaaaggg |
2842823 |
T |
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| Q |
109 |
agaatctctttttggaaaaggaatttgaaagttataggc |
147 |
Q |
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| T |
2842822 |
aaaatctttttttggaaaaggaacttgaaacttttaggc |
2842784 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 283 - 328
Target Start/End: Complemental strand, 2842573 - 2842528
Alignment:
| Q |
283 |
atgatatgcatagatccttttatgatactgagtctgatgttcttga |
328 |
Q |
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| T |
2842573 |
atgatttgcatagctccttttatgatactgagtctgatgttcttga |
2842528 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 151 - 185
Target Start/End: Complemental strand, 2842705 - 2842671
Alignment:
| Q |
151 |
cactttcatttgaaacttgtgatgatccatcacag |
185 |
Q |
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| T |
2842705 |
cactttcatttgaaacatgtgatgatccatcacag |
2842671 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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