View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10163A_low_56 (Length: 325)
Name: NF10163A_low_56
Description: NF10163A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10163A_low_56 |
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Alignment Details
Target: chr3 (Bit Score: 162; Significance: 2e-86; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 137 - 302
Target Start/End: Original strand, 49124225 - 49124390
Alignment:
| Q |
137 |
attcataataaactttgttaaggggacaaaacttttaagatgcagaatgaaaacgatctataacttctccaatcggaattgttcattaatttgttaacag |
236 |
Q |
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| T |
49124225 |
attcataataaactttgttaaggggacaaaacttttaagatgcagaatgaaaacgatctataacttctccaatcggaattgttcattaatttgttaacag |
49124324 |
T |
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| Q |
237 |
ttgtaattttgaattttgtatacttggttaatgttgtgattgaaaaagccataactacattccaag |
302 |
Q |
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| T |
49124325 |
ttgtaattttgaattttgtatacttggttaatgttgtgattgaaaaagccttaactacattccaag |
49124390 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 10 - 144
Target Start/End: Original strand, 49124037 - 49124171
Alignment:
| Q |
10 |
aagaatatttgaagatttcatatctctatgaatcactcgagggtaacaatgctcatgtagatattctaatcctctggtcatcaaagaagaatgtaaatat |
109 |
Q |
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| T |
49124037 |
aagaatatttgaagatttcatatctctatgaatcactcgagggtaacaatgctcatgtagatattctaatcctctggtcatcaaagaagaatgtaaatat |
49124136 |
T |
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| Q |
110 |
gttaagtgtgttaacatagattttaatattcataa |
144 |
Q |
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| T |
49124137 |
gttaagtgtgttaacatagattttaatattcataa |
49124171 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 37; Significance: 0.000000000007; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 238 - 286
Target Start/End: Original strand, 11683218 - 11683266
Alignment:
| Q |
238 |
tgtaattttgaattttgtatacttggttaatgttgtgattgaaaaagcc |
286 |
Q |
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| T |
11683218 |
tgtaattttgaattttgtatactaggttaaagttgtgattgaaatagcc |
11683266 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 238 - 297
Target Start/End: Original strand, 18988416 - 18988475
Alignment:
| Q |
238 |
tgtaattttgaattttgtatacttggttaatgttgtgattgaaaaagccataactacatt |
297 |
Q |
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| T |
18988416 |
tgtaattttgaactttgcaaacttggttaaagttgtaattgaaatagccttaactacatt |
18988475 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 238 - 297
Target Start/End: Complemental strand, 30341349 - 30341290
Alignment:
| Q |
238 |
tgtaattttgaattttgtatacttggttaatgttgtgattgaaaaagccataactacatt |
297 |
Q |
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| T |
30341349 |
tgtaattttgaactttgtaaacttggttaaagttgtaattgaaatagccttaactacatt |
30341290 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 238 - 297
Target Start/End: Complemental strand, 23917108 - 23917049
Alignment:
| Q |
238 |
tgtaattttgaattttgtatacttggttaatgttgtgattgaaaaagccataactacatt |
297 |
Q |
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| T |
23917108 |
tgtaattttgaactttgcaaacttggttaaagttgtaattgaaatagccttaactacatt |
23917049 |
T |
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