View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10163A_low_6 (Length: 543)
Name: NF10163A_low_6
Description: NF10163A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10163A_low_6 |
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Alignment Details
Target: chr2 (Bit Score: 461; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 461; E-Value: 0
Query Start/End: Original strand, 29 - 521
Target Start/End: Complemental strand, 6917921 - 6917429
Alignment:
| Q |
29 |
caaattaccattacttcaagtttttaacctttaccattgatcttggaaacgaccatgtaaccttgttgttctcatgacataagccatttgacttttcaac |
128 |
Q |
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| T |
6917921 |
caaattaccattacttcaagtttttaacctttaccgttgatcttggaaatgaccatgtaaccttgttgttctcatgacataagccatttgacttttcaac |
6917822 |
T |
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| Q |
129 |
accagtggacaaattatgttaacatcatagcctctcaaccaaccataacacaggcgtggaaacagcatgcatgtgtgccaagaacagtcatcaaatagtg |
228 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||| |
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| T |
6917821 |
accagtggacaaattatgttaacatcatagcctctcaaccaaccataacacaggcgtggaaacatcatgcatatgtgccaagaacagtcatcaaatagtg |
6917722 |
T |
|
| Q |
229 |
caaaaattacttatcacttggccctgcaccatctcttagtggaaactgagtgtttgtgatcaatattattattgaataataagtctgtgcatttagcatt |
328 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6917721 |
caaaaattacttatcacttggccctgcaccatctcttagtggaaactgagtgtttgtgatcaatattattattgaataataagtctgtgcatttagcatt |
6917622 |
T |
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| Q |
329 |
ttatattgagtgtgctcaaacaacaagcaaaaggaaaatcagaacctatatgtttcggaatcaacctcgccgcgctcaatcttgatggcctggaacttgc |
428 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
6917621 |
ttatattgagtgtgctcaaacaacaagcaaatggaaaatcagaacctatatgtttcgaaatcaacctcgccgcgctcaatcttgatggcctggaacttgc |
6917522 |
T |
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| Q |
429 |
ctttctggacagttgtgacctctgtatggggagcgaagtgctcccggcttcaaactcgtctccggatagtacctgtttcctgttgcagaactg |
521 |
Q |
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| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
6917521 |
cattctggacagttgtgacctctgtatggggagcgaagtgctcccggcttcaaactcgtctccggatagtacctgttccctgttgcagaactg |
6917429 |
T |
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