View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10163A_low_7 (Length: 513)
Name: NF10163A_low_7
Description: NF10163A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10163A_low_7 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 305; Significance: 1e-171; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 193 - 513
Target Start/End: Complemental strand, 5395583 - 5395263
Alignment:
| Q |
193 |
cactaatgctcgacaaaatgtagaagtacaacgaacctcacttagagaatttctccaactcgacaccactctccgccaaaatgcacaacttaaagaagct |
292 |
Q |
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| T |
5395583 |
cactaatgctcgacaacatgtagaagtacaacgaacctcacttagagaatttctccaactcgacaccactctccgccaaaatgcacaacttaaagaagct |
5395484 |
T |
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| Q |
293 |
atgaattcaacctactcacgtattcaaagccttgagaaagagcttagttgcatgaagaagtttcttcaggatcatcaagctgaggatgaaaaggagaagg |
392 |
Q |
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| T |
5395483 |
atgaattcaacctactcgcgtattcaaagccttgagaaagagcttagttgcatgaagaagtttcttcaggatcatcaagctgaggatgaaaaggagaagg |
5395384 |
T |
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| Q |
393 |
agaaagaaaaagagaaggaacaaagcaatagtgtcttgaattcagaacgttccgcaagttttcattttgttccggttgatgaaaacagtaaaatacaaag |
492 |
Q |
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| T |
5395383 |
agaaagaaaaagagaaggaacaaagcaatagtgtcttgaattcagaacgttccgcgagttttcattttgttccagttgatgaaaacagtaaaatacaaag |
5395284 |
T |
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| Q |
493 |
aggtggaagaggctctatttc |
513 |
Q |
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| T |
5395283 |
aggtggaagaggctctatttc |
5395263 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 148; E-Value: 7e-78
Query Start/End: Original strand, 24 - 175
Target Start/End: Complemental strand, 5395761 - 5395610
Alignment:
| Q |
24 |
aaacagaaatatgcaattcaatagattgtactaagctctcacctcgtaccctagtcgaatgtgttcaaaaccccataatgccactaagattcatcgttcg |
123 |
Q |
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| T |
5395761 |
aaacagaaatatgcaattcaatagattgtactaagctctcacctcgtaccctagtcgaatgtgttcaaaaccccataatgccactaagattcatcgttcg |
5395662 |
T |
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| Q |
124 |
agcaattcttgttgaacacctcaccactcgccgctcaatcactgaagcagca |
175 |
Q |
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| T |
5395661 |
agcaattcttgttgaacacctcaccactcgccgctcaatcaccgaagcagca |
5395610 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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