View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10163A_low_72 (Length: 304)

Name: NF10163A_low_72
Description: NF10163A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10163A_low_72
NF10163A_low_72
[»] chr2 (3 HSPs)
chr2 (1-161)||(45683998-45684159)
chr2 (182-299)||(45683800-45683917)
chr2 (246-299)||(16691130-16691183)
[»] chr4 (1 HSPs)
chr4 (244-299)||(1443415-1443470)


Alignment Details
Target: chr2 (Bit Score: 122; Significance: 1e-62; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 1 - 161
Target Start/End: Complemental strand, 45684159 - 45683998
Alignment:
1 ttgataaaattgtttaccaactcatcctttgatttaatgtattctataatatttatcagacataaatatccatcgctttgtgc-ttttgatatttttgct 99  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
45684159 ttgataaaattgtttaccaactcatcctttgatctaatgtattctataatatttatcagacataaatatccatcgctttgtgctttttgatatttttgct 45684060  T
100 ctcacttttgaacctatttagtcttcgcacctgcannnnnnnnggttactatttatggaatc 161  Q
    |||||||||||||||||||||||||||| ||||||        |||||||||||||||||||    
45684059 ctcacttttgaacctatttagtcttcgcgcctgcattttttttggttactatttatggaatc 45683998  T

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Target: chr2; HSP #2
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 182 - 299
Target Start/End: Complemental strand, 45683917 - 45683800
Alignment:
182 cacttcgatgttgtttccatcgactttcatgtgctaattagaaacatttgttgtaatcttcttggcaggcggactctgaagtgcatatacattggaaagg 281  Q
    ||||| |||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
45683917 cacttagatgttgtttccatcgactttcatgtgctaatcagaaacgtttgttgtaatcttcttggcaggcggactctgaagtgcatatacattggaaagg 45683818  T
282 tgctgctgagatagttct 299  Q
    ||||||||||||||||||    
45683817 tgctgctgagatagttct 45683800  T

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Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 246 - 299
Target Start/End: Original strand, 16691130 - 16691183
Alignment:
246 gcaggcggactctgaagtgcatatacattggaaaggtgctgctgagatagttct 299  Q
    |||||| |||||||| || |||||||||||||||||||||||||| || |||||    
16691130 gcaggctgactctgatgttcatatacattggaaaggtgctgctgaaattgttct 16691183  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 244 - 299
Target Start/End: Original strand, 1443415 - 1443470
Alignment:
244 tggcaggcggactctgaagtgcatatacattggaaaggtgctgctgagatagttct 299  Q
    ||||||| |||||||| |||||||||||| |||||||| ||||| || ||||||||    
1443415 tggcaggtggactctggagtgcatatacactggaaaggagctgcagaaatagttct 1443470  T

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