View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
Legend |
| Query |
| Query hiting target |
| Query hiting target's complemental strand |
| Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10163A_low_72 (Length: 304)
Name: NF10163A_low_72
Description: NF10163A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
[»] NF10163A_low_72 |
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Alignment Details
Target: chr2 (Bit Score: 122; Significance: 1e-62; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 1 - 161
Target Start/End: Complemental strand, 45684159 - 45683998
Alignment:
Q |
1 |
ttgataaaattgtttaccaactcatcctttgatttaatgtattctataatatttatcagacataaatatccatcgctttgtgc-ttttgatatttttgct |
99 |
Q |
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T |
45684159 |
ttgataaaattgtttaccaactcatcctttgatctaatgtattctataatatttatcagacataaatatccatcgctttgtgctttttgatatttttgct |
45684060 |
T |
 |
Q |
100 |
ctcacttttgaacctatttagtcttcgcacctgcannnnnnnnggttactatttatggaatc |
161 |
Q |
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T |
45684059 |
ctcacttttgaacctatttagtcttcgcgcctgcattttttttggttactatttatggaatc |
45683998 |
T |
 |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 182 - 299
Target Start/End: Complemental strand, 45683917 - 45683800
Alignment:
Q |
182 |
cacttcgatgttgtttccatcgactttcatgtgctaattagaaacatttgttgtaatcttcttggcaggcggactctgaagtgcatatacattggaaagg |
281 |
Q |
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T |
45683917 |
cacttagatgttgtttccatcgactttcatgtgctaatcagaaacgtttgttgtaatcttcttggcaggcggactctgaagtgcatatacattggaaagg |
45683818 |
T |
 |
Q |
282 |
tgctgctgagatagttct |
299 |
Q |
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T |
45683817 |
tgctgctgagatagttct |
45683800 |
T |
 |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 246 - 299
Target Start/End: Original strand, 16691130 - 16691183
Alignment:
Q |
246 |
gcaggcggactctgaagtgcatatacattggaaaggtgctgctgagatagttct |
299 |
Q |
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T |
16691130 |
gcaggctgactctgatgttcatatacattggaaaggtgctgctgaaattgttct |
16691183 |
T |
 |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 244 - 299
Target Start/End: Original strand, 1443415 - 1443470
Alignment:
Q |
244 |
tggcaggcggactctgaagtgcatatacattggaaaggtgctgctgagatagttct |
299 |
Q |
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T |
1443415 |
tggcaggtggactctggagtgcatatacactggaaaggagctgcagaaatagttct |
1443470 |
T |
 |
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