View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10163A_low_73 (Length: 302)
Name: NF10163A_low_73
Description: NF10163A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10163A_low_73 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 283; Significance: 1e-158; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 10 - 296
Target Start/End: Original strand, 42211435 - 42211721
Alignment:
| Q |
10 |
ataattctgttcaaaagagaaggatatgagattttgaaacttattcattccatgaggaatgcttccatttagctgattattagcaacacaaaactgttgt |
109 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42211435 |
ataattctgttcaaaagagaaggatatgagattttgaaacttcttcattccatgaggaatgcttccatttagctgattattagcaacacaaaactgttgt |
42211534 |
T |
|
| Q |
110 |
agattgcttgaaagataatcaaccgaacttggaagttccccggtcaagttgttatcattgatcataagaatctgcaactgagttgagtttcgaagggatt |
209 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42211535 |
agattgcttgaaagataatcaaccgaacttggaagttccccggtcaagttgttatcattgatcataagaatctgcaactgagttgagtttcgaagggatt |
42211634 |
T |
|
| Q |
210 |
caaagaactgaaaattcaatgatgtgttggaagtgagatagtttttaccaagagtcaaatgagtgaggtttttcaagttgttgaaaa |
296 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42211635 |
caaagaactgaaaattcaatgatgtgttggaagtgagatagtttttaccaagagtcaaatgagtgaggtttttcaagttgttgaaaa |
42211721 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 10 - 296
Target Start/End: Original strand, 42223651 - 42223937
Alignment:
| Q |
10 |
ataattctgttcaaaagagaaggatatgagattttgaaacttattcattccatgaggaatgcttccatttagctgattattagcaacacaaaactgttgt |
109 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42223651 |
ataattctgttcaaaagagaaggatatgagattttgaaacttcttcattccatgaggaatgcttccatttagctgattattagcaacacaaaactgttgt |
42223750 |
T |
|
| Q |
110 |
agattgcttgaaagataatcaaccgaacttggaagttccccggtcaagttgttatcattgatcataagaatctgcaactgagttgagtttcgaagggatt |
209 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| || ||||||||||||||||||||||| | |
|
|
| T |
42223751 |
agattgcttgaaagataatcaaccgaacttggaagttccccggtcaagttgttatcattgaccataagaatttgtaactgagttgagtttcgaagggaat |
42223850 |
T |
|
| Q |
210 |
caaagaactgaaaattcaatgatgtgttggaagtgagatagtttttaccaagagtcaaatgagtgaggtttttcaagttgttgaaaa |
296 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||| || |||| ||| |||||||||||||||||||||||||||||||| |
|
|
| T |
42223851 |
caaagaactgaaaattcaatgatgtagtggaagtgagattattcttactgagatacaaatgagtgaggtttttcaagttgttgaaaa |
42223937 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 31 - 292
Target Start/End: Original strand, 42198885 - 42199146
Alignment:
| Q |
31 |
ggatatgagattttgaaacttattcattccatgaggaatgcttccatttagctgattattagcaacacaaaactgttgtagattgcttgaaagataatca |
130 |
Q |
| |
|
|||| ||||||||||||| || | |||||| ||||||||||||||| | |||||||||| ||||||||| |||||||||||||||| | | ||||| ||| |
|
|
| T |
42198885 |
ggatgtgagattttgaaatttctgcattccctgaggaatgcttccactcagctgattatgagcaacacagaactgttgtagattgcctcacagatattca |
42198984 |
T |
|
| Q |
131 |
accgaacttggaagttccccggtcaagttgttatcattgatcataagaatctgcaactgagttgagtttcgaagggattcaaagaactgaaaattcaatg |
230 |
Q |
| |
|
|| ||| ||||||||||||| ||||||||||||| ||||| |||||||| |||||||||||||||||| |||||| |||||||||||||||||||||| |
|
|
| T |
42198985 |
acagaatttggaagttccccagtcaagttgttataattgaccataagaacttgcaactgagttgagtttttaagggaatcaaagaactgaaaattcaatg |
42199084 |
T |
|
| Q |
231 |
atgtgttggaagtgagatagtttttaccaagagtcaaatgagtgaggtttttcaagttgttg |
292 |
Q |
| |
|
||||| |||||||||||||||| | ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42199085 |
atgtggtggaagtgagatagttataaccaagagtcaaatgagtgaggtttttcaagttgttg |
42199146 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University