View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10163A_low_74 (Length: 302)
Name: NF10163A_low_74
Description: NF10163A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10163A_low_74 |
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Alignment Details
Target: chr5 (Bit Score: 245; Significance: 1e-136; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 22 - 289
Target Start/End: Original strand, 43098816 - 43099081
Alignment:
| Q |
22 |
aaactagctgtaacaatgtcaggcaaaagagacaagtttggtcagcatttaataaagttcgaaaactagaacatgtaacagactaacagcagcttgcaaa |
121 |
Q |
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| T |
43098816 |
aaactagctgtaacaatgtcaggcaaaagagacaagtttggtcagcatttaataaagttcgaaaactagaacatgtaacagactaacagctgcttgcaaa |
43098915 |
T |
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| Q |
122 |
atgcaaaatcatatagtactactgtctaaaacttgtatgtcaggtctagctcaccatttgatgacacttacattagtatatagttgaacatgcatttcta |
221 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
43098916 |
atgcaaaatcatatagtactaccgtctaaaacttgtatgtcaggtctagctcaccatttgatgacacttacattag--tatagttgaacatgcatttcta |
43099013 |
T |
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| Q |
222 |
taaaagtatactgtacaaatgcagttttttaacaagaaatatatttgggtaaatgatcactttgatct |
289 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
43099014 |
taaaagtatactgtacaaatgcagttttttaacaagaaatatatttgggtaaatgatcactttaatct |
43099081 |
T |
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