View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10163A_low_77 (Length: 297)
Name: NF10163A_low_77
Description: NF10163A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10163A_low_77 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 261; Significance: 1e-145; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 1 - 291
Target Start/End: Original strand, 31557041 - 31557330
Alignment:
| Q |
1 |
aggtactataagaaaataaaactgtattgactatatagtcaataatattatatcatataatagacaaagcacatgtcaatttacaatgccccactttgta |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31557041 |
aggtactataagaaaataaaactgtattgactatatagtcaataatattatatcatataatagacaaagcacatgtcaatttacaatgccccactttgta |
31557140 |
T |
|
| Q |
101 |
ataataggttacacaattcctaagggaatgaaggtgattgcatcatttcgtgctgtgcatttgaatcctgaacatttcaaagatgctcgcaccttcaatc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31557141 |
ataataggttacacaattcctaagggaatgaaggtgattgcatcatttcgtgctgtgcatttgaatcctgaacatttcaaagatgctcgcaccttcaatc |
31557240 |
T |
|
| Q |
201 |
catggagatggcaggtacatgattagnnnnnnnattattgctgatctaattaatgttatgttgagttacactgcactcttcagttgcttat |
291 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
31557241 |
catggagatggcaggtacatgattag-ttttttattattgctgatctaattaatgttatgttgagttacactacactcttcagttgcttat |
31557330 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 138 - 217
Target Start/End: Original strand, 35478967 - 35479046
Alignment:
| Q |
138 |
ttgcatcatttcgtgctgtgcatttgaatcctgaacatttcaaagatgctcgcaccttcaatccatggagatggcaggta |
217 |
Q |
| |
|
|||||||||||||||| || ||| | || || || |||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
35478967 |
ttgcatcatttcgtgccgtacatctaaaccccgatcatttcaaagatgcgcgcaccttcaatccatggagatggcaggta |
35479046 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University