View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10163A_low_8 (Length: 501)
Name: NF10163A_low_8
Description: NF10163A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10163A_low_8 |
 | |
|
| [»] chr4 (1 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 448; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 448; E-Value: 0
Query Start/End: Original strand, 13 - 501
Target Start/End: Original strand, 42446894 - 42447382
Alignment:
| Q |
13 |
attctccaaaaacaaattacattgggattaaaatgctcatgataattatgcctcgccagaaatatgcatggatagatacaagatactttggtctctatca |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
42446894 |
attctccaaaaacaaattacattgggattaaaatgctcatgataattatgcctcgccagaaatatgcatggatagatacaagatactttggtatctatca |
42446993 |
T |
|
| Q |
113 |
ttatcagcaactttccagatagcccaatatacaagactgtttaatatatttgttagaccatcaattttaaagatgtttaaagtttaaacactgaagttta |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42446994 |
ttatcagcaactttccagatagcccaatatacaagactgtttaatatatttgttagaccatcaattttaaagatgtttaaagtttaaacactgaagttta |
42447093 |
T |
|
| Q |
213 |
atttacaatatcttcgttaataaagatttagcaaaatgtaaagatactgattagagtacaccaacactagaagtagaagagcatgtgaatcggggaacag |
312 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42447094 |
atttacaatatcttcgttaataaagatttagcaaaatgtaaagataatgattagagtacaccaacactagaagtagaagagcatgtgaatcggggaacag |
42447193 |
T |
|
| Q |
313 |
aatcagaatttactcaaagaacgtgtcatttccatatcttagaacttcaacaaataccgaaacactagtgtaacttaacctgtttannnnnnncgtcaag |
412 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
42447194 |
aatcagaatttactcaaagaacatgtcatttccatatcttagaacttcaacaaataccgaaacactagtgtaacttaacctgtttatttttttcgtcaag |
42447293 |
T |
|
| Q |
413 |
taatttacacggtgaataagtagagaattcaggattttagcggaagttattatgaaaacaaagcatgcatttcaagaaaagtgggattt |
501 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
42447294 |
taatttacacggtgaataagtaaagaattcaggattttagcggaagttattatgaacacaaagcatgcatttcaagaaaagtgggattt |
42447382 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University