View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10163A_low_81 (Length: 294)

Name: NF10163A_low_81
Description: NF10163A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10163A_low_81
NF10163A_low_81
[»] chr1 (8 HSPs)
chr1 (9-288)||(48585394-48585673)
chr1 (18-286)||(48639976-48640244)
chr1 (18-231)||(48661628-48661841)
chr1 (18-233)||(48667223-48667438)
chr1 (18-231)||(48618046-48618259)
chr1 (18-231)||(48628942-48629155)
chr1 (18-231)||(48653196-48653409)
chr1 (107-229)||(11547396-11547518)
[»] chr8 (1 HSPs)
chr8 (18-160)||(27228243-27228385)
[»] chr3 (1 HSPs)
chr3 (68-231)||(19665402-19665565)


Alignment Details
Target: chr1 (Bit Score: 243; Significance: 1e-135; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 9 - 288
Target Start/End: Original strand, 48585394 - 48585673
Alignment:
Q  9 atgagatggacatcaatataaggttcttcatttgtagggaaaggtgttaatttgtggacatagttatagtaagtggtgaaaacagcagcggaattagtcc 108  Q
    ||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48585394 atgagttgaacatcaatataaggttcttcatttgtagggaaaggtgttaatttgtggacatagttatagtaagtggtgaaaacagcagcggaattagtcc 48585493  T
Q  109 atgataaaacagaaggaatattgtgttcattaacaacatcacaaacccatggnnnnnnntaattgtttatgatacatgaaaatggtttgtttaaatcagc 208  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||    
T  48585494 atgataaaacagaaggaatattgtgttcattagcaacatcacaaacccatggaaaaaaataattgtttatgatacatgaaaatggtttgtttaaatcagc 48585593  T
Q  209 atgattcttgataatttgagaaatagagggtctaccagcaacctcaatttcagcggagtgctgaagagctctgaaggctg 288  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48585594 atgattcttgatcatttgagaaatagagggtctaccagcaacctcaatttcagcggagtgctgaagagctctgaaggctg 48585673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 18 - 286
Target Start/End: Original strand, 48639976 - 48640244
Alignment:
Q  18 acatcaatataaggttcttcatttgtagggaaaggtgttaatttgtggacatagttatagtaagtggtgaaaacagcagcggaattagtccatgataaaa 117  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  48639976 acatcaatataaggttcttcatttgtagggaaagatgttaatttgtggacatagttatagtaagtggtgaaaacagcagcggaattagtccatgacaaaa 48640075  T
Q  118 cagaaggaatattgtgttcattaacaacatcacaaacccatggnnnnnnntaattgtttatgatacatgaaaatggtttgtttaaatcagcatgattctt 217  Q
    ||||||||||||||||||||||| |||| ||||||||||||||       || |||||||||||||||||||||||||||||| |||| |||||||||||    
T  48640076 cagaaggaatattgtgttcattagcaacgtcacaaacccatggaaaaaaatagttgtttatgatacatgaaaatggtttgtttgaatcggcatgattctt 48640175  T
Q  218 gataatttgagaaatagagggtctaccagcaacctcaatttcagcggagtgctgaagagctctgaaggc 286  Q
     || ||||| |||||| || |||| ||||||||||||||||||||  ||||||||||||||||||||||    
T  48640176 tatcatttgtgaaataaagtgtctgccagcaacctcaatttcagcatagtgctgaagagctctgaaggc 48640244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 18 - 231
Target Start/End: Original strand, 48661628 - 48661841
Alignment:
Q  18 acatcaatataaggttcttcatttgtagggaaaggtgttaatttgtggacatagttatagtaagtggtgaaaacagcagcggaattagtccatgataaaa 117  Q
    |||||||| ||||||||||||||||  |||||||||   |||||||||||||||| |||| ||  ||  ||||| |||  ||||||||||||| |||||     
T  48661628 acatcaatgtaaggttcttcatttgatgggaaaggtaccaatttgtggacatagtcatagcaaacggcaaaaactgcactggaattagtccataataaag 48661727  T
Q  118 cagaaggaatattgtgttcattaacaacatcacaaacccatggnnnnnnntaattgtttatgatacatgaaaatggtttgtttaaatcagcatgattctt 217  Q
    ||||||||||||||||||||  | | | |||||||||||||||         ||||||||||| |||||||| |||||||||| ||||||||||||||||    
T  48661728 cagaaggaatattgtgttcaaaagctatatcacaaacccatggaagaaatggattgtttatgacacatgaaattggtttgtttgaatcagcatgattctt 48661827  T
Q  218 gataatttgagaaa 231  Q
    ||| ||||||||||    
T  48661828 gatcatttgagaaa 48661841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 18 - 233
Target Start/End: Original strand, 48667223 - 48667438
Alignment:
Q  18 acatcaatataaggttcttcatttgtagggaaaggtgttaatttgtggacatagttatagtaagtggtgaaaacagcagcggaattagtccatgataaaa 117  Q
    ||||||||||||||||||||||||| ||||||||||   |||||||||||||| | |||| || ||||||||||||||   |||||||||||| | |||     
T  48667223 acatcaatataaggttcttcatttgaagggaaaggtaacaatttgtggacataatcatagcaaatggtgaaaacagcactagaattagtccataacaaag 48667322  T
Q  118 cagaaggaatattgtgttcattaacaacatcacaaacccatggnnnnnnntaattgtttatgatacatgaaaatggtttgtttaaatcagcatgattctt 217  Q
    ||||||||||||||||||||  | | | ||||| |||||||||          |||||||| |||||||||| |||||||||  ||||||||||||||||    
T  48667323 cagaaggaatattgtgttcaaaagctatatcactaacccatggaaaaaaagggttgtttataatacatgaaattggtttgttcgaatcagcatgattctt 48667422  T
Q  218 gataatttgagaaata 233  Q
     || ||||||||||||    
T  48667423 tatcatttgagaaata 48667438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 18 - 231
Target Start/End: Complemental strand, 48618259 - 48618046
Alignment:
Q  18 acatcaatataaggttcttcatttgtagggaaaggtgttaatttgtggacatagttatagtaagtggtgaaaacagcagcggaattagtccatgataaaa 117  Q
    ||||||||||||||||||   | || ||||||| ||   | |||||||| ||||||||||||||  |  ||||||||||  || | | ||||| | |||     
T  48618259 acatcaatataaggttctgtttgtgaagggaaacgtaccagtttgtggaaatagttatagtaagcagaaaaaacagcagttgattgaatccataacaaag 48618160  T
Q  118 cagaaggaatattgtgttcattaacaacatcacaaacccatggnnnnnnntaattgtttatgatacatgaaaatggtttgtttaaatcagcatgattctt 217  Q
    |||||||||||   ||||||| | | |||||||||||||||||         ||||||||||||||||||||||||||||||| ||||||||||||||||    
T  48618159 cagaaggaataccatgttcatcagctacatcacaaacccatggaacaaaaggattgtttatgatacatgaaaatggtttgtttgaatcagcatgattctt 48618060  T
Q  218 gataatttgagaaa 231  Q
    ||| ||||||||||    
T  48618059 gatcatttgagaaa 48618046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 18 - 231
Target Start/End: Original strand, 48628942 - 48629155
Alignment:
Q  18 acatcaatataaggttcttcatttgtagggaaaggtgttaatttgtggacatagttatagtaagtggtgaaaacagcagcggaattagtccatgataaaa 117  Q
    ||||||||||||||||||   | || ||| ||||||   | |||||||||||||||||||||||||| ||||||||||   |||||| |||||||||||     
T  48628942 acatcaatataaggttctgtttctgaaggaaaaggtacaagtttgtggacatagttatagtaagtggcgaaaacagcactagaattattccatgataaag 48629041  T
Q  118 cagaaggaatattgtgttcattaacaacatcacaaacccatggnnnnnnntaattgtttatgatacatgaaaatggtttgtttaaatcagcatgattctt 217  Q
    |||||||||| |  ||||||  | | ||||| |||||||||||         ||||| |||||||||||||| ||||||  || ||||||||||||||||    
T  48629042 cagaaggaatgtcatgttcaaaagctacatcgcaaacccatggaagaaaaggattgtatatgatacatgaaattggtttacttgaatcagcatgattctt 48629141  T
Q  218 gataatttgagaaa 231  Q
    ||| |||| |||||    
T  48629142 gatcattttagaaa 48629155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 18 - 231
Target Start/End: Original strand, 48653196 - 48653409
Alignment:
Q  18 acatcaatataaggttcttcatttgtagggaaaggtgttaatttgtggacatagttatagtaagtggtgaaaacagcagcggaattagtccatgataaaa 117  Q
    ||||||||||||||||||||||||| ||||||| ||   | |||||||| |||||| ||||||| ||| | |||||| | ||| | |  |||| ||||||    
T  48653196 acatcaatataaggttcttcatttgaagggaaacgtaccagtttgtggaaatagttgtagtaagcggtaagaacagcggtggattgaacccataataaaa 48653295  T
Q  118 cagaaggaatattgtgttcattaacaacatcacaaacccatggnnnnnnntaattgtttatgatacatgaaaatggtttgtttaaatcagcatgattctt 217  Q
    |||||||||||   ||||||| | | |||||||||||||| ||         ||| ||||||| |||||||| |||||||||| | ||||||||||||||    
T  48653296 cagaaggaataccatgttcatcagctacatcacaaacccaaggaagaaagggattatttatgagacatgaaattggtttgtttgactcagcatgattctt 48653395  T
Q  218 gataatttgagaaa 231  Q
    ||| ||||||||||    
T  48653396 gatcatttgagaaa 48653409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 107 - 229
Target Start/End: Original strand, 11547396 - 11547518
Alignment:
Q  107 ccatgataaaacagaaggaatattgtgttcattaacaacatcacaaacccatggnnnnnnntaattgtttatgatacatgaaaatggtttgtttaaatca 206  Q
    |||| |||||||||||||||||   ||||||| | | |||||||||||||| ||         ||||||||||||||| |||| |||||||||| | |||    
T  11547396 ccataataaaacagaaggaataccatgttcatgagctacatcacaaacccaaggaacaaaaggattgtttatgatacaagaaattggtttgtttgactca 11547495  T
Q  207 gcatgattcttgataatttgaga 229  Q
     ||||||||||||| ||||||||    
T  11547496 acatgattcttgatcatttgaga 11547518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 18 - 160
Target Start/End: Original strand, 27228243 - 27228385
Alignment:
Q  18 acatcaatataaggttcttcatttgtagggaaaggtgttaatttgtggacatagttatagtaagtggtgaaaacagcagcggaattagtccatgataaaa 117  Q
    |||||||||||||||||| |||| | ||||||| ||   | |||||| | ||||||||||||||  | |||||||||| |||| | | ||||| |||||     
T  27228243 acatcaatataaggttctgcattcgaagggaaacgtaccagtttgtgaaaatagttatagtaagctgcgaaaacagcaccggattgaatccataataaag 27228342  T
Q  118 cagaaggaatattgtgttcattaacaacatcacaaacccatgg 160  Q
    |||||||||| | | |||||  | | ||||||| |||||||||    
T  27228343 cagaaggaatctcgagttcagcagctacatcactaacccatgg 27228385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 68 - 231
Target Start/End: Complemental strand, 19665565 - 19665402
Alignment:
Q  68 atagttatagtaagtggtgaaaacagcagcggaattagtccatgataaaacagaaggaatattgtgttcattaacaacatcacaaacccatggnnnnnnn 167  Q
    ||||||||||||||  ||||||||||||| ||| | | ||||| | ||| ||||||||||||  |||| |  | | |||||||||||||||||           
T  19665565 atagttatagtaagcagtgaaaacagcagtggattgaatccataacaaagcagaaggaatatcatgttgagaagctacatcacaaacccatggaagaaaa 19665466  T
Q  168 taattgtttatgatacatgaaaatggtttgtttaaatcagcatgattcttgataatttgagaaa 231  Q
      |||||||||||| || ||||  ||||||||| | |||  ||||||||| || ||||||||||    
T  19665465 ggattgtttatgatgcaagaaataggtttgtttgactcattatgattcttaatcatttgagaaa 19665402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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