View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10163A_low_88 (Length: 285)
Name: NF10163A_low_88
Description: NF10163A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10163A_low_88 |
 | |
|
| [»] chr6 (2 HSPs) |
| |
|
Alignment Details
Target: chr6 (Bit Score: 244; Significance: 1e-135; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 18 - 285
Target Start/End: Original strand, 663357 - 663624
Alignment:
| Q |
18 |
caatgtaatctgtatattgttttaggaggcaatagtaaactgataacaacacaacgactcactgtttgatcaccagaagcagtgaggatctgtgtatcat |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
663357 |
caatgtaatctgtatattgttttaggaggcaatagtaaactgagaacaacacaacaactcaccgtttgatcaccagaagcagtgaggatctgtgtatcat |
663456 |
T |
|
| Q |
118 |
cctgcaaacaaatgtaaaccaatttaagacactaacaaaacaaacaattcaggctgactacaatcaatcaaaatattaacaaaaacctatttataaagtt |
217 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
663457 |
cctgcatacaaatgtaaaccaatttaagacactaacaaaataaacaattcaggctgactacaatcgatcaaaatattaacaaaaacctatttataaagtt |
663556 |
T |
|
| Q |
218 |
aatgaacatataattgcaaaacttgaaggctaccttaatccaattgacatcaaaaactgcattattat |
285 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
663557 |
aatgaacatataattgcaaaacttgaaggctaccttaatccaattgacatcaaaaactgcattattat |
663624 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 18 - 285
Target Start/End: Complemental strand, 908563 - 908310
Alignment:
| Q |
18 |
caatgtaatctgtatattgttttaggaggcaatagtaaactgataacaacacaacgactcactgtttgatcaccagaagcagtgaggatctgtgtatcat |
117 |
Q |
| |
|
||||||||||| ||||||||||||| || |||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||| |
|
|
| T |
908563 |
caatgtaatctatatattgttttagcagacaatagtaaactgataacaacacaacgactcactgtttaaccaccagaagcagtgaggatct--------- |
908473 |
T |
|
| Q |
118 |
cctgcaaacaaatgtaaaccaatttaagacactaacaaaacaaacaattcaggctgactacaatcaatcaaaatattaacaaaaacctatttataaagtt |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||| | ||||||||||||||| |||||||||||||||||| |||| || |
|
|
| T |
908472 |
-----aaacaaatgtaaaccaatttaagacactaacaaaataaacaattcaggctaattacaatcaatcaaaaaattaacaaaaacctatttgtaaattt |
908378 |
T |
|
| Q |
218 |
aatgaacatataattgcaaaacttgaaggctaccttaatccaattgacatcaaaaactgcattattat |
285 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
908377 |
aatgaacatataattgcaaaaaatgaaggctaccttaatccaattgacgtcaaaaactgcattattat |
908310 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University