View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10163A_low_93 (Length: 282)

Name: NF10163A_low_93
Description: NF10163A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10163A_low_93
NF10163A_low_93
[»] chr4 (6 HSPs)
chr4 (12-276)||(2348070-2348333)
chr4 (38-106)||(39821654-39821722)
chr4 (58-113)||(21223001-21223056)
chr4 (38-113)||(21248081-21248156)
chr4 (38-113)||(22639397-22639471)
chr4 (58-113)||(21231177-21231232)
[»] chr3 (3 HSPs)
chr3 (38-113)||(43220618-43220693)
chr3 (38-106)||(47046257-47046325)
chr3 (59-87)||(43313494-43313522)
[»] chr8 (1 HSPs)
chr8 (58-113)||(43351943-43351998)
[»] chr7 (3 HSPs)
chr7 (59-106)||(20011328-20011375)
chr7 (59-113)||(42244394-42244448)
chr7 (69-113)||(11727627-11727671)
[»] chr5 (4 HSPs)
chr5 (59-106)||(5735968-5736015)
chr5 (67-112)||(15264674-15264719)
chr5 (38-99)||(22638550-22638611)
chr5 (44-92)||(15220560-15220608)
[»] chr1 (2 HSPs)
chr1 (59-102)||(25550004-25550047)
chr1 (38-88)||(824547-824597)
[»] chr2 (3 HSPs)
chr2 (67-113)||(13748185-13748231)
chr2 (58-88)||(45143766-45143796)
chr2 (58-106)||(28631687-28631735)


Alignment Details
Target: chr4 (Bit Score: 166; Significance: 7e-89; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 166; E-Value: 7e-89
Query Start/End: Original strand, 12 - 276
Target Start/End: Complemental strand, 2348333 - 2348070
Alignment:
Q  12 tgttgaatgagactttgattgtggagtttaacgtgtgcattcattcattaattcattttttagcttcttaacttgtgttcttagggcacaagttagtatg 111  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||| ||||| ||||||||    
T  2348333 tgttgaatgagactttgattgtggagtttaacgtgtgcattcattcattaattccttttttagcttcttaacttgtgtttttagg-cacaaattagtatg 2348235  T
Q  112 acgcgcgataacaaaagaatatatcataaaaagggacgnnnnnnnnnnnnnnnnng--ttttataatataattagggacggattgagtatcatataatta 209  Q
    |||||  |||||||||||||||||||||||||||||                   |  ||||||||||||||||||||||||||||||||||||||||||    
T  2348234 acgcg--ataacaaaagaatatatcataaaaagggatcaaaaaaaaatttcaaaagagttttataatataattagggacggattgagtatcatataatta 2348137  T
Q  210 ttttaaaaatacacatttaattcttttctttctctaccttttttgagttatgtgattgtgttgaaat 276  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2348136 ttttaaaaatacacatttaattcttttctttctctaccttttttgagttatgtgattgtgttgaaat 2348070  T

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Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 38 - 106
Target Start/End: Original strand, 39821654 - 39821722
Alignment:
Q  38 tttaacgtgtgcattcattcattaattcattttttagcttcttaacttgtgttcttagggcacaagtta 106  Q
    |||||| |||||||| |||||||||||| |||||||||||||||| |||||| | ||| ||||||||||    
T  39821654 tttaacttgtgcatttattcattaattctttttttagcttcttaatttgtgtccgtagagcacaagtta 39821722  T

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Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 58 - 113
Target Start/End: Complemental strand, 21223056 - 21223001
Alignment:
Q  58 attaattcattttttagcttcttaacttgtgttcttagggcacaagttagtatgac 113  Q
    |||||||||||||||| ||||||||||||||| || |||||||||||||| |||||    
T  21223056 attaattcattttttaacttcttaacttgtgtcctcagggcacaagttagcatgac 21223001  T

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Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 38 - 113
Target Start/End: Complemental strand, 21248156 - 21248081
Alignment:
Q  38 tttaacgtgtgcattcattcattaattcattttttagcttcttaacttgtgttcttagggcacaagttagtatgac 113  Q
    |||||| | |||||| ||| ||||||||||| |||||||||||||||||||  ||||||| ||||||||| |||||    
T  21248156 tttaacttatgcatttattgattaattcattctttagcttcttaacttgtgcccttagggaacaagttagcatgac 21248081  T

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Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 38 - 113
Target Start/End: Original strand, 22639397 - 22639471
Alignment:
Q  38 tttaacgtgtgcattcattcattaattcattttttagcttcttaacttgtgttcttagggcacaagttagtatgac 113  Q
    |||||| |||||||| ||||||||||||| |||||| ||||||||||||||  ||||| |||||| |||| |||||    
T  22639397 tttaacttgtgcatttattcattaattca-tttttaacttcttaacttgtgcccttagagcacaatttagcatgac 22639471  T

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Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 58 - 113
Target Start/End: Complemental strand, 21231232 - 21231177
Alignment:
Q  58 attaattcattttttagcttcttaacttgtgttcttagggcacaagttagtatgac 113  Q
    |||||||||||||||| |||||||||||||||  | |||| ||||||||| |||||    
T  21231232 attaattcattttttaacttcttaacttgtgtcttcagggtacaagttagcatgac 21231177  T

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Target: chr3 (Bit Score: 44; Significance: 4e-16; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 38 - 113
Target Start/End: Complemental strand, 43220693 - 43220618
Alignment:
Q  38 tttaacgtgtgcattcattcattaattcattttttagcttcttaacttgtgttcttagggcacaagttagtatgac 113  Q
    |||||| | |||||| ||| |||||||||||||||| ||||||||||||||| |||||||||||| |||| |||||    
T  43220693 tttaacttatgcatttattgattaattcattttttaacttcttaacttgtgtacttagggcacaacttagcatgac 43220618  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 38 - 106
Target Start/End: Complemental strand, 47046325 - 47046257
Alignment:
Q  38 tttaacgtgtgcattcattcattaattcattttttagcttcttaacttgtgttcttagggcacaagtta 106  Q
    |||||| ||||||||  || ||| ||||||||| || ||||||||||| || |||||||||||||||||    
T  47046325 tttaacttgtgcatttcttgatttattcattttctaacttcttaacttatgctcttagggcacaagtta 47046257  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 59 - 87
Target Start/End: Complemental strand, 43313522 - 43313494
Alignment:
Q  59 ttaattcattttttagcttcttaacttgt 87  Q
    |||||||||||||||||||||||||||||    
T  43313522 ttaattcattttttagcttcttaacttgt 43313494  T

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Target: chr8 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 58 - 113
Target Start/End: Complemental strand, 43351998 - 43351943
Alignment:
Q  58 attaattcattttttagcttcttaacttgtgttcttagggcacaagttagtatgac 113  Q
    |||| ||| |||||||| |||||||||||||  ||||||||||||||||| |||||    
T  43351998 attatttccttttttagtttcttaacttgtgcccttagggcacaagttagcatgac 43351943  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000006; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 59 - 106
Target Start/End: Original strand, 20011328 - 20011375
Alignment:
Q  59 ttaattcattttttagcttcttaacttgtgttcttagggcacaagtta 106  Q
    |||||||| ||||||| |||||||||||||  ||||||||||||||||    
T  20011328 ttaattcaatttttagtttcttaacttgtgcccttagggcacaagtta 20011375  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 59 - 113
Target Start/End: Complemental strand, 42244448 - 42244394
Alignment:
Q  59 ttaattcattttttagcttcttaacttgtgttcttagggcacaagttagtatgac 113  Q
    ||||||| |||||||| |||||||||||||  |||||| ||||||||| ||||||    
T  42244448 ttaattctttttttagattcttaacttgtgcccttaggacacaagttaatatgac 42244394  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 69 - 113
Target Start/End: Complemental strand, 11727671 - 11727627
Alignment:
Q  69 ttttagcttcttaacttgtgttcttagggcacaagttagtatgac 113  Q
    ||||| ||||||||||| |||||| |||||||||||||| |||||    
T  11727671 ttttaccttcttaacttttgttctaagggcacaagttagcatgac 11727627  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000006; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 59 - 106
Target Start/End: Complemental strand, 5736015 - 5735968
Alignment:
Q  59 ttaattcattttttagcttcttaacttgtgttcttagggcacaagtta 106  Q
    ||||||| |||||||| |||||||||||||  ||||||||||||||||    
T  5736015 ttaattctttttttagattcttaacttgtggccttagggcacaagtta 5735968  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 67 - 112
Target Start/End: Original strand, 15264674 - 15264719
Alignment:
Q  67 ttttttagcttcttaacttgtgttcttagggcacaagttagtatga 112  Q
    ||||||||||||||||| |||| ||||||| |||||||||| ||||    
T  15264674 ttttttagcttcttaacatgtgctcttaggacacaagttagcatga 15264719  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 38 - 99
Target Start/End: Original strand, 22638550 - 22638611
Alignment:
Q  38 tttaacgtgtgcattcattcattaattcattttttagcttcttaacttgtgttcttagggca 99  Q
    |||||| |||| ||| ||| |||||||||||||||| | | ||||||||||| |||||||||    
T  22638550 tttaacttgtgtattaattgattaattcattttttaacattttaacttgtgtgcttagggca 22638611  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 44 - 92
Target Start/End: Complemental strand, 15220608 - 15220560
Alignment:
Q  44 gtgtgcattcattcattaattcattttttagcttcttaacttgtgttct 92  Q
    ||||| ||| ||| ||||||||||||| |||||| ||||||||||||||    
T  15220608 gtgtgtatttattgattaattcattttatagctttttaacttgtgttct 15220560  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000006; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 59 - 102
Target Start/End: Original strand, 25550004 - 25550047
Alignment:
Q  59 ttaattcattttttagcttcttaacttgtgttcttagggcacaa 102  Q
    |||||||||||||||| |||||||||||||| |||| |||||||    
T  25550004 ttaattcattttttagtttcttaacttgtgtccttaaggcacaa 25550047  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 38 - 88
Target Start/End: Original strand, 824547 - 824597
Alignment:
Q  38 tttaacgtgtgcattcattcattaattcattttttagcttcttaacttgtg 88  Q
    |||||| |||||||| ||| |||||||| ||||||| ||||||||||||||    
T  824547 tttaacttgtgcatttattgattaattccttttttaacttcttaacttgtg 824597  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 67 - 113
Target Start/End: Original strand, 13748185 - 13748231
Alignment:
Q  67 ttttttagcttcttaacttgtgttcttagggcacaagttagtatgac 113  Q
    ||||||||||||||||||||||  ||||||| ||||||||| |||||    
T  13748185 ttttttagcttcttaacttgtgcccttagggaacaagttagcatgac 13748231  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 58 - 88
Target Start/End: Complemental strand, 45143796 - 45143766
Alignment:
Q  58 attaattcattttttagcttcttaacttgtg 88  Q
    |||||||||||||||||||||||||||||||    
T  45143796 attaattcattttttagcttcttaacttgtg 45143766  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 58 - 106
Target Start/End: Complemental strand, 28631735 - 28631687
Alignment:
Q  58 attaattcattttttagcttcttaacttgtgttcttagggcacaagtta 106  Q
    |||| ||| |||||||||| |||||||||||  ||||||||||||||||    
T  28631735 attatttctttttttagctccttaacttgtgcccttagggcacaagtta 28631687  T

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