View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10163A_low_95 (Length: 279)
Name: NF10163A_low_95
Description: NF10163A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10163A_low_95 |
 | |
|
| [»] chr4 (2 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 237; Significance: 1e-131; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 10 - 279
Target Start/End: Complemental strand, 32024990 - 32024725
Alignment:
| Q |
10 |
acatcaaacataaacccaaatcaacaaattaaatagaaaacaacccaaaagaagtcaaacccacagatcatcaaaattccatttaatcacacagttcaac |
109 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32024990 |
acatcaaacataaacccaaatcaacaaattaaatagaaaacaacccaaaagaagtcaaacacacagatcatcaaaattccatttaatcacacagttcaac |
32024891 |
T |
|
| Q |
110 |
ccaaaagagactcacatatctattttcctcattattaaagattatcaaaggtcaacgaacaaactaagtgtatgtttggtttgtcttcttttcaccgcca |
209 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32024890 |
ccaaaagagactcacatatctattttcctcattattaaagattatcaaaggtc----aacaaactaagtgtatgtttggtttgtcttcttttcaccgcca |
32024795 |
T |
|
| Q |
210 |
ccacacgattacatagcattttgaagtgaaaattagaagccaccacgtggagcttccgcgttaatgtggg |
279 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||| ||||||| |||||||||||||||| |
|
|
| T |
32024794 |
ccacacgattacatagcattttgaagtgaaaattagaagctaccaagtggagcgtccgcgttaatgtggg |
32024725 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 43 - 128
Target Start/End: Complemental strand, 32026389 - 32026304
Alignment:
| Q |
43 |
tagaaaacaacccaaaagaagtcaaacccacagatcatcaaaattccatttaatcacacagttcaacccaaaagagactcacatat |
128 |
Q |
| |
|
|||||||||||| ||| |||||||||| ||||||||||||||||| |||||| ||| ||| || || |||||||||| |||||||| |
|
|
| T |
32026389 |
tagaaaacaaccaaaatgaagtcaaacacacagatcatcaaaatttcatttactcatacacttaaatccaaaagagattcacatat |
32026304 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University