View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10163A_low_97 (Length: 277)
Name: NF10163A_low_97
Description: NF10163A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10163A_low_97 |
 | |
|
| [»] chr3 (5 HSPs) |
| |
|
| [»] chr5 (3 HSPs) |
| |
|
| [»] chr8 (1 HSPs) |
| |
|
| [»] chr4 (3 HSPs) |
| |
|
| [»] chr1 (2 HSPs) |
| |
|
| [»] chr7 (1 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 232; Significance: 1e-128; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 14 - 277
Target Start/End: Original strand, 37145565 - 37145828
Alignment:
| Q |
14 |
ggacatcttgcaagccgagctaaccgcgattcaccaagaactgcatatggttattgatttgaatatgaatgacgtcatgtgctactcggattcccttctt |
113 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37145565 |
ggacatattgcaagccgagctaaccgcgattcaccaaggtctgcatatggttattgacttgaatatgaatgacgtcatgtgctactcggattcccttctt |
37145664 |
T |
|
| Q |
114 |
gcagttaatcttattatgaatgacactccgagatatcacacctatgccatcctcattcagaacataaaggatttgcttagtgttcaaaatatcactctcc |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
37145665 |
gcagttaatcttattatgaatgacactccgagatatcacacctacgccgtcctcattcagaacataaaggatttgcttagtgttcgaaatatcactctcc |
37145764 |
T |
|
| Q |
214 |
atcacacattaagagaggggaaccaatgtgctgatttctttgccaagttgggtgctaattcaga |
277 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
37145765 |
atcacacattaagagaggggaaccaatgtgcggatttctttgccaagttgggtgctaattcaga |
37145828 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 21 - 153
Target Start/End: Complemental strand, 53606537 - 53606405
Alignment:
| Q |
21 |
ttgcaagccgagctaaccgcgattcaccaagaactgcatatggttattgatttgaatatgaatgacgtcatgtgctactcggattcccttcttgcagtta |
120 |
Q |
| |
|
|||| ||| |||||||| || |||||||||| |||| | |||||| ||||||||| ||||||| | ||||||||||||||||||||||| || |||| |
|
|
| T |
53606537 |
ttgctagcggagctaacagctattcaccaaggactgaaattggttacggatttgaatgtgaatgagataatgtgctactcggattcccttctagctgtta |
53606438 |
T |
|
| Q |
121 |
atcttattatgaatgacactccgagatatcaca |
153 |
Q |
| |
|
|||||||| |||||||||||| ||||| |||| |
|
|
| T |
53606437 |
atcttattgcgaatgacactcctagataccaca |
53606405 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 58 - 277
Target Start/End: Complemental strand, 17716555 - 17716336
Alignment:
| Q |
58 |
atatggttattgatttgaatatgaatgacgtcatgtgctactcggattcccttcttgcagttaatcttattatgaatgacactccgagatatcacaccta |
157 |
Q |
| |
|
|||||| ||| || ||||| |||||||| | ||||||||||||||||| || ||||| |||||||| || |||||||| || ||||||| |||| ||| |
|
|
| T |
17716555 |
atatggctatggacttgaacatgaatgattttatgtgctactcggattctctccttgctgttaatctcatcatgaatgatacaccgagattccacatcta |
17716456 |
T |
|
| Q |
158 |
tgccatcctcattcagaacataaaggatttgcttagt-gttcaaaatatcactctccatcacacattaagagaggggaaccaatgtgctgatttctttgc |
256 |
Q |
| |
|
|||| | || ||||| ||||| || ||||||| |||| | || || ||| |||| |||||||| ||||||||||| || |||||||| |||| ||||| |
|
|
| T |
17716455 |
tgccgttcttattcaaaacattaaagatttgc-tagtcgatcggaacatctctcttcatcacaccttaagagagggaaatcaatgtgcagattattttgc |
17716357 |
T |
|
| Q |
257 |
caagttgggtgctaattcaga |
277 |
Q |
| |
|
|| |||||||| | |||||| |
|
|
| T |
17716356 |
taaattgggtgccatttcaga |
17716336 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 58 - 277
Target Start/End: Complemental strand, 19017784 - 19017565
Alignment:
| Q |
58 |
atatggttattgatttgaatatgaatgacgtcatgtgctactcggattcccttcttgcagttaatcttattatgaatgacactccgagatatcacaccta |
157 |
Q |
| |
|
|||||| ||| || ||||| |||||||| | ||||||||||||||||| || ||||| |||||||| || |||||||| || ||||||| |||| ||| |
|
|
| T |
19017784 |
atatggctatggacttgaacatgaatgattttatgtgctactcggattctctccttgctgttaatctcatcatgaatgatacaccgagattccacatcta |
19017685 |
T |
|
| Q |
158 |
tgccatcctcattcagaacataaaggatttgcttagt-gttcaaaatatcactctccatcacacattaagagaggggaaccaatgtgctgatttctttgc |
256 |
Q |
| |
|
|||| | || ||||| ||||| || ||||||| |||| | || || ||| |||| |||||||| ||||||||||| || |||||||| |||| ||||| |
|
|
| T |
19017684 |
tgccgttcttattcaaaacattaaagatttgc-tagtcgatcggaacatctctcttcatcacaccttaagagagggaaatcaatgtgcagattattttgc |
19017586 |
T |
|
| Q |
257 |
caagttgggtgctaattcaga |
277 |
Q |
| |
|
|| |||||||| | |||||| |
|
|
| T |
19017585 |
taaattgggtgccatttcaga |
19017565 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 210 - 277
Target Start/End: Complemental strand, 53606348 - 53606281
Alignment:
| Q |
210 |
ctccatcacacattaagagaggggaaccaatgtgctgatttctttgccaagttgggtgctaattcaga |
277 |
Q |
| |
|
||||| ||||| |||||||||||||| |||||||| || |||||||| || || |||||||||||||| |
|
|
| T |
53606348 |
ctccaccacactttaagagaggggaatcaatgtgcggacttctttgctaaatttggtgctaattcaga |
53606281 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 228; Significance: 1e-126; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 14 - 277
Target Start/End: Complemental strand, 42690034 - 42689771
Alignment:
| Q |
14 |
ggacatcttgcaagccgagctaaccgcgattcaccaagaactgcatatggttattgatttgaatatgaatgacgtcatgtgctactcggattcccttctt |
113 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42690034 |
ggacatattgcaagccgagctaaccgcgattcaccaaggtctgcatatgattattgatttgaatatgaatgacgtcatgtgctactcggattcccttctt |
42689935 |
T |
|
| Q |
114 |
gcagttaatcttattatgaatgacactccgagatatcacacctatgccatcctcattcagaacataaaggatttgcttagtgttcaaaatatcactctcc |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||| ||||||| |||||| |
|
|
| T |
42689934 |
gcagttaatcttattatgaatgacactccgagatatcacacctacgccgtcctcattcagaacataaaggatttgcttagtgttcgaaatatctctctcc |
42689835 |
T |
|
| Q |
214 |
atcacacattaagagaggggaaccaatgtgctgatttctttgccaagttgggtgctaattcaga |
277 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
42689834 |
atcacacattaagagaggggaaccaatgtgcggatttctttgccaagttgggtgctaattcaga |
42689771 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 16 - 277
Target Start/End: Original strand, 23946686 - 23946947
Alignment:
| Q |
16 |
acatcttgcaagccgagctaaccgcgattcaccaagaactgcatatggttattgatttgaatatgaatgacgtcatgtgctactcggattcccttcttgc |
115 |
Q |
| |
|
|||| ||||||||||| |||||||| |||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||| ||||| |||||||| |
|
|
| T |
23946686 |
acatattgcaagccgaactaaccgcaattcaccaaggtctgcatatggttattgattcgaatatgaatgacgtcatgtgctactcagattcacttcttgc |
23946785 |
T |
|
| Q |
116 |
agttaatcttattatgaatgacactccgagatatcacacctatgccatcctcattcagaacataaaggatttgcttagtgttcaaaatatcactctccat |
215 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||| || ||| |||||||||||||||||||||||||||||||||||| |||||| ||||||||| |
|
|
| T |
23946786 |
agtcaatcttattatgaatgacactccgagatatcacacatacgccttcctcattcagaacataaaggatttgcttagtgttcgaaatataactctccat |
23946885 |
T |
|
| Q |
216 |
cacacattaagagaggggaaccaatgtgctgatttctttgccaagttgggtgctaattcaga |
277 |
Q |
| |
|
||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
23946886 |
cacactttaagagaggggaaccaatgtgcggatttctttgccaagttgggtgctaattcaga |
23946947 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 27 - 273
Target Start/End: Original strand, 16781448 - 16781692
Alignment:
| Q |
27 |
gccgagctaaccgcgattcaccaagaactgcatatggttattgatttgaatatgaatgacgtcatgtgctactcggattcccttcttgcagttaatctta |
126 |
Q |
| |
|
||||||||||| | |||||||||| ||| ||||||||||||| ||||| |||||||| | ||||||||||| |||||||| ||||| |||||||||| |
|
|
| T |
16781448 |
gccgagctaacaactattcaccaagggctgaatatggttattgacttgaacatgaatgatcttatgtgctactcagattccctccttgctgttaatctta |
16781547 |
T |
|
| Q |
127 |
ttatgaatgacactccgagatatcacacctatgccatcctcattcagaacataaaggatttgcttagtgttcaaaatatcactctccatcacacattaag |
226 |
Q |
| |
|
| |||||||| | |||||||| |||| ||| ||| | ||||||| ||| || || || ||||| || || || ||| |||| |||||||| ||||| |
|
|
| T |
16781548 |
tcatgaatgata-tccgagattccacatctacgccgttctcattc-gaatattaaagacttgctagttgatcggaacatctctcttcatcacaccttaag |
16781645 |
T |
|
| Q |
227 |
agaggggaaccaatgtgctgatttctttgccaagttgggtgctaatt |
273 |
Q |
| |
|
||||||||| ||||||| |||| |||||| || |||| |||||||| |
|
|
| T |
16781646 |
agaggggaatcaatgtgtggattactttgctaaattggatgctaatt |
16781692 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 216; Significance: 1e-118; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 14 - 277
Target Start/End: Complemental strand, 45211066 - 45210803
Alignment:
| Q |
14 |
ggacatcttgcaagccgagctaaccgcgattcaccaagaactgcatatggttattgatttgaatatgaatgacgtcatgtgctactcggattcccttctt |
113 |
Q |
| |
|
|||||| |||||||||||||||||||| ||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
45211066 |
ggacatattgcaagccgagctaaccgcaattcaccaaagtttgcatatggttattgattcgaatatgaatgacgtcatgtgctactcggattcacttctt |
45210967 |
T |
|
| Q |
114 |
gcagttaatcttattatgaatgacactccgagatatcacacctatgccatcctcattcagaacataaaggatttgcttagtgttcaaaatatcactctcc |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
45210966 |
gcagttaatcttattatgaatgacactccgagatatcacacctacgccgtcctcattcagaacataaaggatttgcttagtgttcgaaatatcactctcc |
45210867 |
T |
|
| Q |
214 |
atcacacattaagagaggggaaccaatgtgctgatttctttgccaagttgggtgctaattcaga |
277 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
45210866 |
atcacacattaagagaggggaaccaatgtgcggatttctttgccaagttgggtgctaattcaga |
45210803 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 216; Significance: 1e-118; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 14 - 277
Target Start/End: Original strand, 33805884 - 33806147
Alignment:
| Q |
14 |
ggacatcttgcaagccgagctaaccgcgattcaccaagaactgcatatggttattgatttgaatatgaatgacgtcatgtgctactcggattcccttctt |
113 |
Q |
| |
|
|||||| |||||||||||||||||||| |||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
33805884 |
ggacatattgcaagccgagctaaccgcaattcaccaaggtttgcatatggttattgattcgaatatgaatgacgtcatgtgctactcggattcacttctt |
33805983 |
T |
|
| Q |
114 |
gcagttaatcttattatgaatgacactccgagatatcacacctatgccatcctcattcagaacataaaggatttgcttagtgttcaaaatatcactctcc |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||| ||||| |||||||||||||| |
|
|
| T |
33805984 |
gcagttaatcttattatgaatgacactccgagatatcacacctacgccgtcctcattcagaacataaaggatttgcttaatgttcgaaatatcactctcc |
33806083 |
T |
|
| Q |
214 |
atcacacattaagagaggggaaccaatgtgctgatttctttgccaagttgggtgctaattcaga |
277 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
33806084 |
atcacacattaagagaggggaaccaatgtgcggatttctttgccaagttgggtgctaattcaga |
33806147 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 110 - 277
Target Start/End: Complemental strand, 30961316 - 30961149
Alignment:
| Q |
110 |
tcttgcagttaatcttattatgaatgacactccgagatatcacacctatgccatcctcattcagaacataaaggatttgcttagtgttcaaaatatcact |
209 |
Q |
| |
|
|||||| ||||||||||| |||||||| || |||||||| |||||||| ||| ||||||| ||||| |||||||| ||||| | ||||| || ||| || |
|
|
| T |
30961316 |
tcttgctgttaatcttatcatgaatgataccccgagataccacacctacgccgtcctcatccagaatataaaggacttgctaattgttcggaacatctct |
30961217 |
T |
|
| Q |
210 |
ctccatcacacattaagagaggggaaccaatgtgctgatttctttgccaagttgggtgctaattcaga |
277 |
Q |
| |
|
|| |||||||| |||||||||||||||||||||| ||||||||||| || ||||||||||||||||| |
|
|
| T |
30961216 |
cttcatcacaccttaagagaggggaaccaatgtgtggatttctttgctaaattgggtgctaattcaga |
30961149 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 48 - 277
Target Start/End: Original strand, 11240122 - 11240351
Alignment:
| Q |
48 |
caagaactgcatatggttattgatttgaatatgaatgacgtcatgtgctactcggattcccttcttgcagttaatcttattatgaatgacactccgagat |
147 |
Q |
| |
|
||||| ||| || ||| |||||| ||||| ||| |||| |||||||||||||||||||||| ||| ||| || |||| | |||||| || ||||||| |
|
|
| T |
11240122 |
caagatctgaatttggctattgaattgaacgtgactgacctcatgtgctactcggattccctgattgttgttcattttatcaagaatgataccccgagat |
11240221 |
T |
|
| Q |
148 |
atcacacctatgccatcctcattcagaacataaaggatttgcttagt-gttcaaaatatcactctccatcacacattaagagaggggaaccaatgtgctg |
246 |
Q |
| |
|
|||| ||| | | | |||||||| || || || || ||| ||||| | || || ||| ||||||||||||| ||||||||||||||||||||| | |
|
|
| T |
11240222 |
tccacatctacgtcgtgctcattcaaaatattaaagacttg-ttagttgatcggaacatctctctccatcacaccttaagagaggggaaccaatgtttgg |
11240320 |
T |
|
| Q |
247 |
atttctttgccaagttgggtgctaattcaga |
277 |
Q |
| |
|
||| |||||| || || ||||||| |||||| |
|
|
| T |
11240321 |
attactttgctaaattaggtgctagttcaga |
11240351 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 162; Significance: 2e-86; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 16 - 277
Target Start/End: Original strand, 721450 - 721711
Alignment:
| Q |
16 |
acatcttgcaagccgagctaaccgcgattcaccaagaactgcatatggttattgatttgaatatgaatgacgtcatgtgctactcggattcccttcttgc |
115 |
Q |
| |
|
|||| ||||| ||||||||||| ||||||||||||| || ||||| |||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
721450 |
acattttgcaggccgagctaacagcgattcaccaagggttgaatatgattattgatttgaatatgaatgacgtcatgtgctacttggattcccttcttgt |
721549 |
T |
|
| Q |
116 |
agttaatcttattatgaatgacactccgagatatcacacctatgccatcctcattcagaacataaaggatttgcttagtgttcaaaatatcactctccat |
215 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||| ||| ||||||||||||| |||||||||||||| | ||||| || || |||||||| |
|
|
| T |
721550 |
agttaatcttattatgaatgacactccgagataccacacctacgccgtcctcattcagaatataaaggatttgctaattgttcggaacttctctctccat |
721649 |
T |
|
| Q |
216 |
cacacattaagagaggggaaccaatgtgctgatttctttgccaagttgggtgctaattcaga |
277 |
Q |
| |
|
||||||||||||||||||| |||||| || ||||||||||| |||||||||||||||||||| |
|
|
| T |
721650 |
cacacattaagagaggggagccaatgcgcggatttctttgctaagttgggtgctaattcaga |
721711 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 14 - 277
Target Start/End: Original strand, 38880672 - 38880934
Alignment:
| Q |
14 |
ggacatcttgcaagccgagctaaccgcgattcaccaagaactgcatatggttattgatttgaatatgaatgacgtcatgtgctactcggattcccttctt |
113 |
Q |
| |
|
|||||| ||| | ||| ||||||| ||||||||||||| ||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38880672 |
ggacattttgtaggccaagctaacagcgattcaccaagggctgaatatgattattgatttgaatatgaatgacgtcatgtgctactcggattcccttctt |
38880771 |
T |
|
| Q |
114 |
gcagttaatcttattatgaatgacactccgagatatcacacctatgccatcctcattcagaacataaaggatttgcttagtgttcaaaatatcactctcc |
213 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||| |||||||| | | ||||||||||||| |||||||||||||| | ||||| || ||| |||||| |
|
|
| T |
38880772 |
gcagttaatcttattatgaatgacact-cgagataccacacctacgtcgtcctcattcagaatataaaggatttgctaattgttcggaacatctctctcc |
38880870 |
T |
|
| Q |
214 |
atcacacattaagagaggggaaccaatgtgctgatttctttgccaagttgggtgctaattcaga |
277 |
Q |
| |
|
|||||||||||||| || |||||||||| || ||||||||||| |||||||||| ||||||||| |
|
|
| T |
38880871 |
atcacacattaagatagaggaaccaatgcgcggatttctttgctaagttgggtgttaattcaga |
38880934 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 21 - 277
Target Start/End: Original strand, 46831337 - 46831593
Alignment:
| Q |
21 |
ttgcaagccgagctaaccgcgattcaccaagaactgcatatggttattgatttgaatatgaatgacgtcatgtgctactcggattcccttcttgcagtta |
120 |
Q |
| |
|
|||| ||| |||||||| || |||||||||| |||| | |||||| ||||||||| ||||||| | ||||||||||||||||||||||| || |||| |
|
|
| T |
46831337 |
ttgctagcggagctaacagctattcaccaaggactgaaattggttacggatttgaatgtgaatgagataatgtgctactcggattcccttctagctgtta |
46831436 |
T |
|
| Q |
121 |
atcttattatgaatgacactccgagatatcacacctatgccatcctcattcagaacataaaggatttgcttagtgttcaaaatatcactctccatcacac |
220 |
Q |
| |
|
|||||||| |||||||||||| ||||| |||| ||| ||| || || ||||| || || || |||| | || || || | ||||| ||||| |
|
|
| T |
46831437 |
atcttattgcgaatgacactcctagataccacatctacgccgctcttatccagaatatcaaagacctgctaaatgacaggaacatttccctccaccacac |
46831536 |
T |
|
| Q |
221 |
attaagagaggggaaccaatgtgctgatttctttgccaagttgggtgctaattcaga |
277 |
Q |
| |
|
|||||||||||||| |||||||| || |||||||| || || |||||||||||||| |
|
|
| T |
46831537 |
tttaagagaggggaatcaatgtgcggacttctttgctaaatttggtgctaattcaga |
46831593 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 53; Significance: 2e-21; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 21 - 153
Target Start/End: Complemental strand, 1297721 - 1297589
Alignment:
| Q |
21 |
ttgcaagccgagctaaccgcgattcaccaagaactgcatatggttattgatttgaatatgaatgacgtcatgtgctactcggattcccttcttgcagtta |
120 |
Q |
| |
|
|||| ||| |||||||| || |||||||||| | || | ||||||| ||||||||| ||||||| | ||||||||||||||||||||||| || |||| |
|
|
| T |
1297721 |
ttgctagcggagctaacagctattcaccaaggaatgaaattggttatggatttgaatgtgaatgagataatgtgctactcggattcccttctagctgtta |
1297622 |
T |
|
| Q |
121 |
atcttattatgaatgacactccgagatatcaca |
153 |
Q |
| |
|
|||||||| |||||||||||| ||||| |||| |
|
|
| T |
1297621 |
atcttattgcgaatgacactcctagataccaca |
1297589 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 58 - 244
Target Start/End: Original strand, 8684662 - 8684848
Alignment:
| Q |
58 |
atatggttattgatttgaatatgaatgacgtcatgtgctactcggattcccttcttgcagttaatcttattatgaatgacactccgagatatcacaccta |
157 |
Q |
| |
|
|||||| ||| || ||||| |||||||| | ||||||||||| ||||| || ||||| |||||||| || |||||||| || ||||||| |||| ||| |
|
|
| T |
8684662 |
atatggctatggacttgaacatgaatgattttatgtgctactcagattctctccttgctgttaatctcatcatgaatgatacaccgagattccacatcta |
8684761 |
T |
|
| Q |
158 |
tgccatcctcattcagaacataaaggatttgcttagt-gttcaaaatatcactctccatcacacattaagagaggggaaccaatgtgc |
244 |
Q |
| |
|
|| | || ||||| ||||| || ||||||| |||| | || ||| || |||| |||||||| ||||||||||| || |||||||| |
|
|
| T |
8684762 |
cgctgttcttattcaaaacattaaagatttgc-tagtcgatcggaatttctctcttcatcacaccttaagagagggaaatcaatgtgc |
8684848 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 224 - 277
Target Start/End: Original strand, 8639291 - 8639344
Alignment:
| Q |
224 |
aagagaggggaaccaatgtgctgatttctttgccaagttgggtgctaattcaga |
277 |
Q |
| |
|
|||||||||||| |||||||| |||| |||||| || |||||||||| |||||| |
|
|
| T |
8639291 |
aagagaggggaatcaatgtgcagattactttgctaaattgggtgctagttcaga |
8639344 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University