View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10163_high_8 (Length: 249)

Name: NF10163_high_8
Description: NF10163
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10163_high_8
NF10163_high_8
[»] chr4 (3 HSPs)
chr4 (1-238)||(2901794-2902031)
chr4 (1-238)||(2882979-2883233)
chr4 (151-238)||(2872944-2873031)
[»] chr2 (3 HSPs)
chr2 (153-238)||(44226432-44226517)
chr2 (153-238)||(44237230-44237315)
chr2 (150-237)||(44214263-44214350)
[»] chr7 (6 HSPs)
chr7 (152-217)||(39333840-39333905)
chr7 (160-237)||(39592650-39592727)
chr7 (152-213)||(39345119-39345180)
chr7 (164-213)||(39551815-39551864)
chr7 (161-226)||(39578189-39578254)
chr7 (161-213)||(39359673-39359725)


Alignment Details
Target: chr4 (Bit Score: 234; Significance: 1e-129; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 1 - 238
Target Start/End: Complemental strand, 2902031 - 2901794
Alignment:
Q  1 aatatatactgttctctttcgctgttcatgaggtttcagttcagtaataaaaacatgacctaataatcttaagggacaaagttcaaatcccctcgagtac 100  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2902031 aatatatactgttctctttcgctgttcatgaggttttagttcagtaataaaaacatgacctaataatcttaagggacaaagttcaaatcccctcgagtac 2901932  T
Q  101 ctacgtcattttaacaaacaataaattccatgacattgtgttctaaaggtatctgggagagtgacttataatggacatgggatggatgaatttgtacctc 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2901931 ctacgtcattttaacaaacaataaattccatgacattgtgttctaaaggtatctgggagagtgacttataatggacatgggatggatgaatttgtacctc 2901832  T
Q  201 aaagaactgctgcatatattagtcaacatgatgttcat 238  Q
    ||||||||||||||||||||||||||||||||||||||    
T  2901831 aaagaactgctgcatatattagtcaacatgatgttcat 2901794  T

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Target: chr4; HSP #2
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 1 - 238
Target Start/End: Original strand, 2882979 - 2883233
Alignment:
Q  1 aatatatactgttctctttcgctgttcatgaggtttcagttcagtaataaaaacatgacctaataatcttaagggacaaagttcaaatcccctcgagtac 100  Q
    |||||||| ||||||||||| ||||||| | ||||||||||||||  ||||||| |||||| |||||||||||||| |||||||||||||||||||||||    
T  2882979 aatatatattgttctctttcactgttcacggggtttcagttcagtggtaaaaacttgaccttataatcttaagggagaaagttcaaatcccctcgagtac 2883078  T
Q  101 -------------ctacgt----cattttaacaaacaataaattccatgacattgtgttctaaaggtatctgggagagtgacttataatggacatgggat 183  Q
                 |||  |    || ||| | ||| ||||| ||| ||| | |||||| ||  ||||||| |||||||| ||||||||||||||||||||    
T  2883079 ggtattaaaatgactatttgtctcactttcataaataataacttcgatgtcgttgtgtcctccaggtatcagggagagtaacttataatggacatgggat 2883178  T
Q  184 ggatgaatttgtacctcaaagaactgctgcatatattagtcaacatgatgttcat 238  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  2883179 ggatgaatttgtacctcagagaactgctgcatatattagtcaacatgatgttcat 2883233  T

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Target: chr4; HSP #3
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 151 - 238
Target Start/End: Original strand, 2872944 - 2873031
Alignment:
Q  151 atctgggagagtgacttataatggacatgggatggatgaatttgtacctcaaagaactgctgcatatattagtcaacatgatgttcat 238  Q
    |||||| |||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2872944 atctggtagagtgacttataatggatatggaatggatgaatttgtacctcaaagaactgctgcatatattagtcaacatgatgttcat 2873031  T

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Target: chr2 (Bit Score: 46; Significance: 2e-17; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 153 - 238
Target Start/End: Complemental strand, 44226517 - 44226432
Alignment:
Q  153 ctgggagagtgacttataatggacatgggatggatgaatttgtacctcaaagaactgctgcatatattagtcaacatgatgttcat 238  Q
    ||||||| |||||||| ||||| |||||  || |||| ||||||||||||||||||||||| ||||| || |||||||||||||||    
T  44226517 ctgggagtgtgacttacaatggccatggactgaatgagtttgtacctcaaagaactgctgcctatataagccaacatgatgttcat 44226432  T

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Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 153 - 238
Target Start/End: Complemental strand, 44237315 - 44237230
Alignment:
Q  153 ctgggagagtgacttataatggacatgggatggatgaatttgtacctcaaagaactgctgcatatattagtcaacatgatgttcat 238  Q
    ||||||| |||||||| ||||| |||||  || | || |||||||||||||||||||| || ||||| || |||||||||||||||    
T  44237315 ctgggagtgtgacttacaatggccatggactgaacgagtttgtacctcaaagaactgcggcttatatcagccaacatgatgttcat 44237230  T

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Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 150 - 237
Target Start/End: Complemental strand, 44214350 - 44214263
Alignment:
Q  150 tatctgggagagtgacttataatggacatgggatggatgaatttgtacctcaaagaactgctgcatatattagtcaacatgatgttca 237  Q
    |||||||||  ||||| || |||||||| ||  || |||| ||||||||||||||||||||||| ||||| || || |||||||||||    
T  44214350 tatctgggaatgtgacctacaatggacacggactgaatgagtttgtacctcaaagaactgctgcttatatcagccagcatgatgttca 44214263  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000003; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 152 - 217
Target Start/End: Original strand, 39333840 - 39333905
Alignment:
Q  152 tctgggagagtgacttataatggacatgggatggatgaatttgtacctcaaagaactgctgcatat 217  Q
    ||||| || |||||||||||||| |||| ||||  ||||||||| || ||||||||||||||||||    
T  39333840 tctggaagggtgacttataatggtcatgagatgagtgaatttgtcccccaaagaactgctgcatat 39333905  T

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Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 160 - 237
Target Start/End: Complemental strand, 39592727 - 39592650
Alignment:
Q  160 agtgacttataatggacatgggatggatgaatttgtacctcaaagaactgctgcatatattagtcaacatgatgttca 237  Q
    ||||| ||||||||| |||| |||| | ||||||||||| |||||||||||||| ||| | |||||| ||||| ||||    
T  39592727 agtgagttataatggtcatgagatgaaagaatttgtaccccaaagaactgctgcttatgtcagtcaaaatgatcttca 39592650  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 152 - 213
Target Start/End: Original strand, 39345119 - 39345180
Alignment:
Q  152 tctgggagagtgacttataatggacatgggatggatgaatttgtacctcaaagaactgctgc 213  Q
    ||||| || |||||||||||||| |||| ||||  ||||||||| || ||||||||||||||    
T  39345119 tctggaagggtgacttataatggtcatgagatgagtgaatttgtcccccaaagaactgctgc 39345180  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 164 - 213
Target Start/End: Complemental strand, 39551864 - 39551815
Alignment:
Q  164 acttataatggacatgggatggatgaatttgtacctcaaagaactgctgc 213  Q
    ||||||||||| |||| |||| |||| ||||| |||||||||||||||||    
T  39551864 acttataatggtcatgagatgaatgagtttgtgcctcaaagaactgctgc 39551815  T

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Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 161 - 226
Target Start/End: Complemental strand, 39578254 - 39578189
Alignment:
Q  161 gtgacttataatggacatgggatggatgaatttgtacctcaaagaactgctgcatatattagtcaa 226  Q
    |||||||| || || |||| |||| |||| ||||||||||||||||||||||| ||| | ||||||    
T  39578254 gtgacttacaacggtcatgagatgaatgagtttgtacctcaaagaactgctgcttatgtcagtcaa 39578189  T

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Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 161 - 213
Target Start/End: Original strand, 39359673 - 39359725
Alignment:
Q  161 gtgacttataatggacatgggatggatgaatttgtacctcaaagaactgctgc 213  Q
    |||||||||||||| |||| ||||  ||| |||||||| ||||||||||||||    
T  39359673 gtgacttataatggtcatgagatgagtgagtttgtaccccaaagaactgctgc 39359725  T

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