View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10163_low_12 (Length: 251)

Name: NF10163_low_12
Description: NF10163
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10163_low_12
NF10163_low_12
[»] chr3 (1 HSPs)
chr3 (1-86)||(51389330-51389415)
[»] chr4 (2 HSPs)
chr4 (93-155)||(26594666-26594729)
chr4 (97-147)||(47952675-47952726)


Alignment Details
Target: chr3 (Bit Score: 78; Significance: 2e-36; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 1 - 86
Target Start/End: Original strand, 51389330 - 51389415
Alignment:
Q  1 aaaaggtttctacttggcttgatgtggaacaatggttttcaatgctttacacacctatagcttgctattccctgtttaccaagaca 86  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||    
T  51389330 aaaaggtttctacttggcttgatgtggaacaatggtcttcaatgctttacacaactatagcttgctattccctgtttaccaagaca 51389415  T

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Target: chr4 (Bit Score: 48; Significance: 2e-18; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 93 - 155
Target Start/End: Complemental strand, 26594729 - 26594666
Alignment:
Q  93 ttaatgagagatgatacatggacaaacttatgtggcaa-ataccactctacacctctcccatat 155  Q
    |||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||| |||||    
T  26594729 ttaatgagagatgatacatggacacacttatgtggcaacataccactctacacctctctcatat 26594666  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 97 - 147
Target Start/End: Complemental strand, 47952726 - 47952675
Alignment:
Q  97 tgagagatgatacatggacaaacttatgtggcaa-ataccactctacacctc 147  Q
    ||||||||||||| | |||| ||||||||||||| |||||||||||||||||    
T  47952726 tgagagatgatacgttgacacacttatgtggcaacataccactctacacctc 47952675  T

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