View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10163_low_15 (Length: 239)
Name: NF10163_low_15
Description: NF10163
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10163_low_15 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 222; Significance: 1e-122; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 17 - 238
Target Start/End: Complemental strand, 2902372 - 2902151
Alignment:
| Q |
17 |
gaggcagggctttaccaactttgttgaactcagttatgaatgcagtcgaggtaaatataaccagattctactttctcagcttttgttgtttctttacttt |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2902372 |
gaggcagggctttaccaactttgttgaactcagttatgaatgcagtcgaggtaaatataaccagattctactttctcagcttttgttgtttctttacttt |
2902273 |
T |
|
| Q |
117 |
gcaattagtctcataaccatgctttctttggtctttcagagtatcttgacttatctccatattttcactagcaaaaagaaacatatgactatcctcaaag |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2902272 |
gcaattagtctcataaccatgctttctttggtctttcagagtatcttgacttatctccatattttcactagcaaaaagaaacatatgactatcctcaaag |
2902173 |
T |
|
| Q |
217 |
atgtaagtggaatagtcaaacc |
238 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
2902172 |
atgtaagtggaatagtcaaacc |
2902151 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 17 - 238
Target Start/End: Original strand, 2882641 - 2882859
Alignment:
| Q |
17 |
gaggcagggctttaccaactttgttgaactcagttatgaatgcagtcgaggtaaatataaccagattctactttctcagcttttgttgtttctttacttt |
116 |
Q |
| |
|
||||||||||||| ||||||||||||||||| |||| || ||||||||||||||| ||||||||||||||||||||| | || ||||| || |
|
|
| T |
2882641 |
gaggcagggctttgccaactttgttgaactcggttactaacacagtcgaggtaaatacaaccagattctactttctcagttgttattgttgtttc----- |
2882735 |
T |
|
| Q |
117 |
gcaattagtctcataaccatgcttt--ctttggtctttcagagtatcttgacttatctccatattttcactagcaaaaagaaacatatgactatcctcaa |
214 |
Q |
| |
|
||||||||||||||||| | ||| |||||||||||||||||||||||| || ||||||||| |||| |||| ||||||||| ||||||||||| || |
|
|
| T |
2882736 |
gcaattagtctcataacttttttttttctttggtctttcagagtatcttgatttccctccatattctcacaagcagaaagaaacaaatgactatccttaa |
2882835 |
T |
|
| Q |
215 |
agatgtaagtggaatagtcaaacc |
238 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
2882836 |
agatgtaagtggaatagtcaaacc |
2882859 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 188 - 238
Target Start/End: Original strand, 2872696 - 2872746
Alignment:
| Q |
188 |
caaaaagaaacatatgactatcctcaaagatgtaagtggaatagtcaaacc |
238 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
2872696 |
caaaaagaaacatatgactatccttaaagatgtaagtggaatagtcaaacc |
2872746 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University