View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10163_low_16 (Length: 223)
Name: NF10163_low_16
Description: NF10163
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10163_low_16 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 179; Significance: 9e-97; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 179; E-Value: 9e-97
Query Start/End: Original strand, 14 - 207
Target Start/End: Original strand, 4641592 - 4641783
Alignment:
| Q |
14 |
cataggacatggtacactctatataacaaaagacaacactacactatatcaatgttataaataaaacagaatttctccaaaatgctggagcaccaatttt |
113 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
4641592 |
cataggacatggtacactctatataacaaaagacaacactacactat--caatgttataaataaaccagaatttctccaaaatgctggagcaccaatttt |
4641689 |
T |
|
| Q |
114 |
gattgcagccccttgagacagtcgttgaagtttgcagtagtgtttccaatcccctccaatttcccagtgtaatttagggctttttcaatgaatg |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4641690 |
gattgcagccccttgagacagtcgttgaagtttgcagtagtgtttccaatcccctccaatttcccagtgtaatttagggctttttcaatgaatg |
4641783 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 109; Significance: 5e-55; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 109; E-Value: 5e-55
Query Start/End: Original strand, 14 - 197
Target Start/End: Complemental strand, 3005312 - 3005131
Alignment:
| Q |
14 |
cataggacatggtacactctatataacaaaagacaacactacactatatcaatgttataaataaaacagaatttctccaaaatgctggagcaccaatttt |
113 |
Q |
| |
|
|||||||| |||||||||| |||||||||||||| |||||||||||| ||||||||||||||||||||||||||||| || | |||||||||||||||| |
|
|
| T |
3005312 |
cataggacctggtacactccatataacaaaagaccacactacactat--caatgttataaataaaacagaatttctcccaactactggagcaccaatttt |
3005215 |
T |
|
| Q |
114 |
gattgcagccccttgagacagtcgttgaagtttgcagtagtgtttccaatcccctccaatttcccagtgtaatttagggctttt |
197 |
Q |
| |
|
|||||||| |||| ||||||| ||| ||||| ||||||||||||||||||||||||||||||| |||| |||| | ||||||| |
|
|
| T |
3005214 |
gattgcagtccctcgagacagccgtcgaagtgtgcagtagtgtttccaatcccctccaatttcatagtgcaattcaaggctttt |
3005131 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 85; Significance: 1e-40; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 14 - 197
Target Start/End: Complemental strand, 7853130 - 7852949
Alignment:
| Q |
14 |
cataggacatggtacactctatataacaaaagacaacactacactatatcaatgttataaataaaacagaatttctccaaaatgctggagcaccaatttt |
113 |
Q |
| |
|
|||||||| || ||||||| |||||||||||||| |||||||||||| ||||||||||||||||||| ||||||| | || || |||||||||| |||| |
|
|
| T |
7853130 |
cataggacttgctacactccatataacaaaagaccacactacactat--caatgttataaataaaacaaaatttcttccaactgatggagcaccagtttt |
7853033 |
T |
|
| Q |
114 |
gattgcagccccttgagacagtcgttgaagtttgcagtagtgtttccaatcccctccaatttcccagtgtaatttagggctttt |
197 |
Q |
| |
|
|||||||| |||| ||| ||| ||| ||||||||||||||||||||||| || ||||||||| |||| |||| ||||||||| |
|
|
| T |
7853032 |
gattgcagtccctcgagtcagccgtcgaagtttgcagtagtgtttccaaccctttccaatttcatagtgcaattcagggctttt |
7852949 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 14 - 197
Target Start/End: Original strand, 5562944 - 5563125
Alignment:
| Q |
14 |
cataggacatggtacactctatataacaaaagacaacactacactatatcaatgttataaataaaacagaatttctccaaaatgctggagcaccaatttt |
113 |
Q |
| |
|
|||||||| || ||||||| |||| ||||||||| |||||||||||| ||||||||||||||||||| ||||||| | || | |||||||| | |||| |
|
|
| T |
5562944 |
cataggacctgctacactccatattacaaaagaccacactacactat--caatgttataaataaaacaaaatttcttccaactattggagcactagtttt |
5563041 |
T |
|
| Q |
114 |
gattgcagccccttgagacagtcgttgaagtttgcagtagtgtttccaatcccctccaatttcccagtgtaatttagggctttt |
197 |
Q |
| |
|
|| ||||| |||| |||| || ||| ||||| ||||||||||||||||| || ||||||||| ||||||||||||||||||| |
|
|
| T |
5563042 |
gaatgcagtccctcgagatagccgtcgaagtgtgcagtagtgtttccaaccctttccaatttcatagtgtaatttagggctttt |
5563125 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 148 - 197
Target Start/End: Complemental strand, 54655179 - 54655130
Alignment:
| Q |
148 |
cagtagtgtttccaatcccctccaatttcccagtgtaatttagggctttt |
197 |
Q |
| |
|
||||||||||||||||||||||||||||| |||| |||| | ||||||| |
|
|
| T |
54655179 |
cagtagtgtttccaatcccctccaatttcatagtgcaattcaaggctttt |
54655130 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University