View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10163_low_4 (Length: 427)

Name: NF10163_low_4
Description: NF10163
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10163_low_4
NF10163_low_4
[»] chr6 (3 HSPs)
chr6 (17-410)||(663602-664000)
chr6 (21-249)||(908100-908328)
chr6 (203-247)||(10157995-10158039)
[»] chr7 (4 HSPs)
chr7 (291-354)||(44172881-44172944)
chr7 (284-358)||(36314611-36314685)
chr7 (308-374)||(38134414-38134480)
chr7 (200-248)||(36314628-36314676)
[»] chr2 (1 HSPs)
chr2 (197-248)||(44605137-44605188)
[»] chr5 (2 HSPs)
chr5 (297-370)||(16315862-16315935)
chr5 (297-345)||(19625928-19625976)
[»] chr3 (1 HSPs)
chr3 (291-359)||(8039206-8039274)
[»] chr4 (2 HSPs)
chr4 (297-359)||(18513238-18513300)
chr4 (318-367)||(5654609-5654658)
[»] chr8 (1 HSPs)
chr8 (308-373)||(6501481-6501546)
[»] chr1 (2 HSPs)
chr1 (291-368)||(43328458-43328535)
chr1 (197-245)||(40158408-40158456)


Alignment Details
Target: chr6 (Bit Score: 367; Significance: 0; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 367; E-Value: 0
Query Start/End: Original strand, 17 - 410
Target Start/End: Original strand, 663602 - 664000
Alignment:
Q  17 gacatcaaaaactgcattattatgcgaactccattcacaaatcctcgcttcctctgatatcaaaagaggcaaaatttcacataagcaaatcataaaccat 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  663602 gacatcaaaaactgcattattatgcgaactccattcacaaatcctcgcttcctctgatatcaaaagaggcaaaatttcacataagcaaatcataaaccat 663701  T
Q  117 aaaaactgttcgtatataaaatctttgtagcaccaacacttcttatcaaaggtgtgccaagtgtacaatgcatgtaagtatctaacaccgacacatgtaa 216  Q
    ||||| ||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  663702 aaaaattgttcatatatataatctttgtagcaccaacacttcttatcaaaggtgtgccaagtgtacaatgcatgtaagtatctaacaccgacacatgtaa 663801  T
Q  217 tttcattgaaatatgtctttttctcaaattataaatggtgttagaatcgacacttctaatcaaaggtgtgtctaacact-----aacacaacactaacac 311  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     ||||||||||||||||    
T  663802 tttcattgaaatatgtctttttctcaaattataaatggtgttagaatcgacacttctaatcaaaggtgtgtctaacactaacacaacacaacactaacac 663901  T
Q  312 atgtggttacattgaaatatgccatgttctcaaattatcatcagtgtcaacatgtcaatgtccatattgtatcaggtgttcatacttcaaatctaatta 410  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  663902 atgtggttacattgaaatatgccatgttctcaaattatcatcagtgtcaacatgtcaatgtccatattgtatcaggtgttcatacttcaaatctaatta 664000  T

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Target: chr6; HSP #2
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 21 - 249
Target Start/End: Complemental strand, 908328 - 908100
Alignment:
Q  21 tcaaaaactgcattattatgcgaactccattcacaaatcctcgcttcctctgatatcaaaagaggcaaaatttcacataagcaaatcataaaccataaaa 120  Q
    ||||||||||||||||||||| |||||||||||||||| ||||||| ||||| |||||||||||||||||||||||||||| ||||||||||||||||||    
T  908328 tcaaaaactgcattattatgcaaactccattcacaaattctcgctttctctggtatcaaaagaggcaaaatttcacataagtaaatcataaaccataaaa 908229  T
Q  121 actgttcgtatataaaatctttgtagcaccaacacttcttatcaaaggtgtgccaagtgtacaatgcatgtaagtatctaacaccgacacatgtaatttc 220  Q
      ||||  |||||| ||||||||||||||||||||| ||||||||||||||||||||||| | || ||||||||| ||||||||||||| |||||| | |    
T  908228 tttgttgatatatataatctttgtagcaccaacactacttatcaaaggtgtgccaagtgtccgatacatgtaagtgtctaacaccgacaaatgtaagtac 908129  T
Q  221 attgaaatatgtctttttctcaaattata 249  Q
    ||||||||||| || ||||||||||||||    
T  908128 attgaaatatgactatttctcaaattata 908100  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 203 - 247
Target Start/End: Complemental strand, 10158039 - 10157995
Alignment:
Q  203 accgacacatgtaatttcattgaaatatgtctttttctcaaatta 247  Q
    |||||||||||| ||| ||||||| |||||| |||||||||||||    
T  10158039 accgacacatgtgattacattgaattatgtcattttctcaaatta 10157995  T

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Target: chr7 (Bit Score: 36; Significance: 0.00000000004; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 291 - 354
Target Start/End: Original strand, 44172881 - 44172944
Alignment:
Q  291 acactaacacaacactaacacatgtggttacattgaaatatgccatgttctcaaattatcatca 354  Q
    |||| |||||||||| |||||||||| |||||||||| |||| ||| |||||||||||| ||||    
T  44172881 acaccaacacaacacaaacacatgtgattacattgaattatgtcattttctcaaattattatca 44172944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 284 - 358
Target Start/End: Original strand, 36314611 - 36314685
Alignment:
Q  284 gtgtctaacactaacacaacactaacacatgtggttacattgaaatatgccatgttctcaaattatcatcagtgt 358  Q
    ||||| ||||| || ||||||| ||||||| || ||||||||||||||| ||| |||||||||||| || |||||    
T  36314611 gtgtccaacaccaagacaacaccaacacatatgattacattgaaatatgtcattttctcaaattattatgagtgt 36314685  T

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Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 308 - 374
Target Start/End: Original strand, 38134414 - 38134480
Alignment:
Q  308 acacatgtggttacattgaaatatgccatgttctcaaattatcatcagtgtcaacatgtcaatgtcc 374  Q
    |||||| || |||||||||| |||| ||| |||||||||||| ||| ||||||||||||| ||||||    
T  38134414 acacatatgattacattgaattatgtcattttctcaaattattatcggtgtcaacatgtccatgtcc 38134480  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 200 - 248
Target Start/End: Original strand, 36314628 - 36314676
Alignment:
Q  200 aacaccgacacatgtaatttcattgaaatatgtctttttctcaaattat 248  Q
    |||||| |||||| | ||| |||||||||||||| ||||||||||||||    
T  36314628 aacaccaacacatatgattacattgaaatatgtcattttctcaaattat 36314676  T

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Target: chr2 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 197 - 248
Target Start/End: Original strand, 44605137 - 44605188
Alignment:
Q  197 tctaacaccgacacatgtaatttcattgaaatatgtctttttctcaaattat 248  Q
    |||||||||||||||||||||| ||||||| |||||  ||||||||||||||    
T  44605137 tctaacaccgacacatgtaattacattgaattatgttattttctcaaattat 44605188  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000006; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 297 - 370
Target Start/End: Complemental strand, 16315935 - 16315862
Alignment:
Q  297 acacaacactaacacatgtggttacattgaaatatgccatgttctcaaattatcatcagtgtcaacatgtcaat 370  Q
    |||||||||  | ||||||||||||||| || |||  ||| | |||||||||| ||||||||||||||||||||    
T  16315935 acacaacacagatacatgtggttacattcaattatatcatttcctcaaattattatcagtgtcaacatgtcaat 16315862  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 297 - 345
Target Start/End: Original strand, 19625928 - 19625976
Alignment:
Q  297 acacaacactaacacatgtggttacattgaaatatgccatgttctcaaa 345  Q
    |||||||||| ||||||||||||||||| || ||| |||| ||||||||    
T  19625928 acacaacactgacacatgtggttacattcaattattccattttctcaaa 19625976  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 291 - 359
Target Start/End: Complemental strand, 8039274 - 8039206
Alignment:
Q  291 acactaacacaacactaacacatgtggttacattgaaatatgccatgttctcaaattatcatcagtgtc 359  Q
    ||||| |||||||||  |||| | || ||||||||||  ||||||| ||||||||||||||||||||||    
T  8039274 acactgacacaacaccgacacctatgattacattgaatcatgccattttctcaaattatcatcagtgtc 8039206  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 297 - 359
Target Start/End: Original strand, 18513238 - 18513300
Alignment:
Q  297 acacaacactaacacatgtggttacattgaaatatgccatgttctcaaattatcatcagtgtc 359  Q
    |||||||||| |||||| || |||||||||| |||| ||| |||||||||||| ||| |||||    
T  18513238 acacaacactgacacatatgattacattgaattatgtcattttctcaaattattatcggtgtc 18513300  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 318 - 367
Target Start/End: Original strand, 5654609 - 5654658
Alignment:
Q  318 ttacattgaaatatgccatgttctcaaattatcatcagtgtcaacatgtc 367  Q
    |||||||||| |||| ||| |||||||||||| ||||||||| |||||||    
T  5654609 ttacattgaattatgtcattttctcaaattattatcagtgtcgacatgtc 5654658  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 308 - 373
Target Start/End: Complemental strand, 6501546 - 6501481
Alignment:
Q  308 acacatgtggttacattgaaatatgccatgttctcaaattatcatcagtgtcaacatgtcaatgtc 373  Q
    ||||||||||||||||| || |||  |||  ||||||||||| | |||||||||| ||||||||||    
T  6501546 acacatgtggttacatttaattatttcattctctcaaattattaccagtgtcaacgtgtcaatgtc 6501481  T

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Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 291 - 368
Target Start/End: Complemental strand, 43328535 - 43328458
Alignment:
Q  291 acactaacacaacactaacacatgtggttacattgaaatatgccatgttctcaaattatcatcagtgtcaacatgtca 368  Q
    |||| ||||| ||| | ||||||||||||||||| || |||  ||| |||||||||||| || ||||||||| |||||    
T  43328535 acaccaacacgacaatgacacatgtggttacattaaattatttcattttctcaaattattataagtgtcaacgtgtca 43328458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 197 - 245
Target Start/End: Original strand, 40158408 - 40158456
Alignment:
Q  197 tctaacaccgacacatgtaatttcattgaaatatgtctttttctcaaat 245  Q
    |||||||||||||||||| |||||||| |  |||||| |||||||||||    
T  40158408 tctaacaccgacacatgtgatttcattcatttatgtcattttctcaaat 40158456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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