View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10163_low_5 (Length: 406)

Name: NF10163_low_5
Description: NF10163
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10163_low_5
NF10163_low_5
[»] chr1 (8 HSPs)
chr1 (1-388)||(48584329-48584716)
chr1 (199-374)||(48618975-48619150)
chr1 (197-368)||(48628108-48628279)
chr1 (198-374)||(11546415-11546591)
chr1 (194-376)||(48660756-48660938)
chr1 (208-369)||(48655786-48655947)
chr1 (196-367)||(48666350-48666521)
chr1 (205-374)||(48652311-48652480)
[»] chr3 (1 HSPs)
chr3 (199-376)||(19666329-19666506)
[»] chr8 (1 HSPs)
chr8 (200-359)||(27227341-27227500)


Alignment Details
Target: chr1 (Bit Score: 380; Significance: 0; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 380; E-Value: 0
Query Start/End: Original strand, 1 - 388
Target Start/End: Original strand, 48584329 - 48584716
Alignment:
Q  1 aatagaggatccaaatacttttccataacttggttattttttattagaattcttaaaacacacaacatatataactgcaaacacaaaaatataaactgca 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48584329 aatagaggatccaaatacttttccataacttggttattttttattacaattcttaaaacacacaacatatataactgcaaacacaaaaatataaactgca 48584428  T
Q  101 tgaataaaattatccttatccatgtagtgaggaaaggacagtgaaatggatgatattacatgttctagatgttaacattattaattaatgatgcatgttt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48584429 tgaataaaattatccttatccatgtagtgaggaaaggacagtgaaatggatgatattacatgttctagatgttaacattattaattaatgatgcatgttt 48584528  T
Q  201 cttaatgtcttccataaactcatcaagattccgatcagaggatccaccaacggccaaagcttcctccgccttcttcttccacttttttgcattttgcttc 300  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  48584529 cttaatgtcttccataaactcatcaagattccgatcagaggatccaccaacggccaaagcttcctccgccttcttcttccacttgtttgcattttgcttc 48584628  T
Q  301 aacttctctgctttttcacctattgttgcttccaataaacacttcttcacctcatctcttgttaccaatttattatttacagcccaac 388  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48584629 aacttctctgctttttcacctattgttgcttccaataaacacttcttcacctcatctcttgttaccaatttattatttacagcccaac 48584716  T

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Target: chr1; HSP #2
Raw Score: 116; E-Value: 7e-59
Query Start/End: Original strand, 199 - 374
Target Start/End: Complemental strand, 48619150 - 48618975
Alignment:
Q  199 ttcttaatgtcttccataaactcatcaagattccgatcagaggatccaccaacggccaaagcttcctccgccttcttcttccacttttttgcattttgct 298  Q
    |||| ||||||||||||||| ||||||||||||||||||||||||||||||| |||||  ||||| ||||||||||||||||||||  ||||||||| ||    
T  48619150 ttctgaatgtcttccataaattcatcaagattccgatcagaggatccaccaatggccactgcttcatccgccttcttcttccacttcattgcatttttct 48619051  T
Q  299 tcaacttctctgctttttcacctattgttgcttccaataaacacttcttcacctcatctcttgttaccaatttatt 374  Q
    |||||| |||||||||||| ||| |||| ||||||||||||||||| |||||||||||||||||||| ||||||||    
T  48619050 tcaactcctctgctttttcccctgttgtagcttccaataaacactttttcacctcatctcttgttactaatttatt 48618975  T

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Target: chr1; HSP #3
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 197 - 368
Target Start/End: Original strand, 48628108 - 48628279
Alignment:
Q  197 gtttcttaatgtcttccataaactcatcaagattccgatcagaggatccaccaacggccaaagcttcctccgccttcttcttccacttttttgcattttg 296  Q
    |||| |||||||||||||||||  |||||||||||| |||||||||||||||||||||||  |||||||| |||| ||||||||||||  |||||||||     
T  48628108 gttttttaatgtcttccataaatgcatcaagattccaatcagaggatccaccaacggccactgcttcctctgcctccttcttccacttcattgcattttt 48628207  T
Q  297 cttcaacttctctgctttttcacctattgttgcttccaataaacacttcttcacctcatctcttgttaccaa 368  Q
    |||||||| |||||||||||| ||| |||||||||||||||| |||||||||||||||||||||||||||||    
T  48628208 cttcaactcctctgctttttcccctgttgttgcttccaataagcacttcttcacctcatctcttgttaccaa 48628279  T

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Target: chr1; HSP #4
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 198 - 374
Target Start/End: Original strand, 11546415 - 11546591
Alignment:
Q  198 tttcttaatgtcttccataaactcatcaagattccgatcagaggatccaccaacggccaaagcttcctccgccttcttcttccacttttttgcattttgc 297  Q
    ||||||||||||||||| ||| ||||||||||||||||||||||||||||||| |||||  |||||||| ||||| |||||||||||| ||||||||| |    
T  11546415 tttcttaatgtcttccaaaaattcatcaagattccgatcagaggatccaccaatggccactgcttcctcagcctttttcttccactttattgcatttttc 11546514  T
Q  298 ttcaacttctctgctttttcacctattgttgcttccaataaacacttcttcacctcatctcttgttaccaatttatt 374  Q
    ||||| | ||| |||||||| |||||||||||||| ||||| ||||| |||||||||||||||||||| ||||||||    
T  11546515 ttcaaatcctcagctttttcccctattgttgcttctaataagcactttttcacctcatctcttgttacaaatttatt 11546591  T

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Target: chr1; HSP #5
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 194 - 376
Target Start/End: Original strand, 48660756 - 48660938
Alignment:
Q  194 catgtttcttaatgtcttccataaactcatcaagattccgatcagaggatccaccaacggccaaagcttcctccgccttcttcttccacttttttgcatt 293  Q
    ||||||||||||||||||  |||||  |||||||||  || || ||||| ||||| || ||||  || ||||| ||   | ||||||||||  |||||||    
T  48660756 catgtttcttaatgtcttggataaatgcatcaagatgtcggtccgaggaaccaccgactgccatcgcatcctctgctgccgtcttccacttcattgcatt 48660855  T
Q  294 ttgcttcaacttctctgctttttcacctattgttgcttccaataaacacttcttcacctcatctcttgttaccaatttattat 376  Q
    ||| |||||| ||||||||||||| ||| || ||||||||||||| |||||||||||||||||||||||||||| ||| ||||    
T  48660856 ttgtttcaacctctctgctttttcccctgttattgcttccaataagcacttcttcacctcatctcttgttaccagtttcttat 48660938  T

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Target: chr1; HSP #6
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 208 - 369
Target Start/End: Original strand, 48655786 - 48655947
Alignment:
Q  208 tcttccataaactcatcaagattccgatcagaggatccaccaacggccaaagcttcctccgccttcttcttccacttttttgcattttgcttcaacttct 307  Q
    ||||| |||||  |||||||||  || || ||||||||||| ||||| |  || ||||||||   ||||||||||||  ||||||||| |||||||| ||    
T  48655786 tcttcgataaatgcatcaagatatcggtcggaggatccacctacggcaactgcatcctccgctgccttcttccacttgattgcatttttcttcaactcct 48655885  T
Q  308 ctgctttttcacctattgttgcttccaataaacacttcttcacctcatctcttgttaccaat 369  Q
    |||||||||| ||| |||| |||||||| || ||||||||||||||||||||||||| ||||    
T  48655886 ctgctttttcccctgttgtagcttccaacaagcacttcttcacctcatctcttgttatcaat 48655947  T

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Target: chr1; HSP #7
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 196 - 367
Target Start/End: Original strand, 48666350 - 48666521
Alignment:
Q  196 tgtttcttaatgtcttccataaactcatcaagattccgatcagaggatccaccaacggccaaagcttcctccgccttcttcttccacttttttgcatttt 295  Q
    |||||||||||||||||||||||  |||||||||  || || ||||| |||||||| ||||  ||||||||||||  ||| ||| ||||  |||||||||    
T  48666350 tgtttcttaatgtcttccataaatgcatcaagatgtcggtccgaggaaccaccaaccgccactgcttcctccgccgcctttttcaacttggttgcatttt 48666449  T
Q  296 gcttcaacttctctgctttttcacctattgttgcttccaataaacacttcttcacctcatctcttgttacca 367  Q
     ||||||| ||||||||||||| ||| ||||  |||||||||| || ||||| |  ||||||||| ||||||    
T  48666450 tcttcaacgtctctgctttttcccctgttgtaacttccaataagcatttctttaaatcatctcttcttacca 48666521  T

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Target: chr1; HSP #8
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 205 - 374
Target Start/End: Original strand, 48652311 - 48652480
Alignment:
Q  205 atgtcttccataaactcatcaagattccgatcagaggatccaccaacggccaaagcttcctccgccttcttcttccacttttttgcattttgcttcaact 304  Q
    ||||||| ||||||  ||||||||| | ||||||| |||||||| | ||| |  || ||||||||    |||||||||||  ||||||||| ||||||||    
T  48652311 atgtcttgcataaatgcatcaagatgcagatcagatgatccacctatggcaaccgcatcctccgctgctttcttccacttgattgcatttttcttcaact 48652410  T
Q  305 tctctgctttttcacctattgttgcttccaataaacacttcttcacctcatctcttgttaccaatttatt 374  Q
     |||||||||||| ||     |||||||||| || ||||||||||||||||||||||| |||||||||||    
T  48652411 cctctgctttttccccagccattgcttccaacaagcacttcttcacctcatctcttgtcaccaatttatt 48652480  T

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Target: chr3 (Bit Score: 106; Significance: 6e-53; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 199 - 376
Target Start/End: Complemental strand, 19666506 - 19666329
Alignment:
Q  199 ttcttaatgtcttccataaactcatcaagattccgatcagaggatccaccaacggccaaagcttcctccgccttcttcttccacttttttgcattttgct 298  Q
    |||||||||||||||||||| ||||||||||||||||||||||| |||||    ||||  ||||||||||||   |||||||||||  ||||||||||||    
T  19666506 ttcttaatgtcttccataaattcatcaagattccgatcagaggaaccaccggtcgccaccgcttcctccgccgctttcttccacttgattgcattttgct 19666407  T
Q  299 tcaacttctctgctttttcacctattgttgcttccaataaacacttcttcacctcatctcttgttaccaatttattat 376  Q
    |||||| |||| ||||||| |||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||    
T  19666406 tcaactcctctcctttttctcctattgttgcttccaataagcacttcttcacttcatctcttgttaccaatttattat 19666329  T

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Target: chr8 (Bit Score: 44; Significance: 6e-16; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 200 - 359
Target Start/End: Original strand, 27227341 - 27227500
Alignment:
Q  200 tcttaatgtcttccataaactcatcaagattccgatcagaggatccaccaacggccaaagcttcctccgccttcttcttccacttttttgcattttgctt 299  Q
    |||||||||||||||||||  |||||| || |||||||||||| ||||| || || |  ||  |||||||   ||||||||||||  |||  ||||||||    
T  27227341 tcttaatgtcttccataaatgcatcaatatgccgatcagaggaaccacctaccgcaactgcagcctccgctgccttcttccacttgattgtgttttgctt 27227440  T
Q  300 caacttctctgctttttcacctattgttgcttccaataaacacttcttcacctcatctct 359  Q
    |||| |||||||||||   |||    ||||||||||||| || |||||||||||||||||    
T  27227441 caacatctctgcttttggccctgccattgcttccaataagcatttcttcacctcatctct 27227500  T

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