View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10163_low_7 (Length: 381)
Name: NF10163_low_7
Description: NF10163
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10163_low_7 |
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Alignment Details
Target: chr5 (Bit Score: 279; Significance: 1e-156; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 12 - 371
Target Start/End: Complemental strand, 34435840 - 34435491
Alignment:
| Q |
12 |
cacagacacacgcaccagacacaagctgacacataactactaataataattttgaaaaaa--gacgtaattaaaggcaaccacatatgtcggatccggat |
109 |
Q |
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| T |
34435840 |
cacagacacacgcaccagacacaagctgacacataactactaataataattttgaaaaaatagacgtaattaaaggcaaccacatatgtcagatccggat |
34435741 |
T |
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| Q |
110 |
tgtaaataggttgtccaatcaagatcagacagtctacattacaagctaagtattttagatctnnnnnnnccaaaatcctctttaaaatctggactgttct |
209 |
Q |
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| T |
34435740 |
tgtaaataggttgtccaatcaagatcagacagtctagattacaagctaagtattttagatctaa-------aaaaacc-----aaaatctggactgttct |
34435653 |
T |
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| Q |
210 |
atctttattgacagctgatatgcctgtgcagtcacactgcacccaatccaaatgtgtgagtgttaagacaccggcaaatgtcggacacaaaacatgtgtt |
309 |
Q |
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|||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34435652 |
atctttattgacagctgatatgcctgtgcaatcacactgcaaccaatccaaatgtgtgagtgttaagacaccggcaaatgtcggacacaaaacatgtgtt |
34435553 |
T |
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| Q |
310 |
ccatctgatgatggtgatgtattaatacattttttggcactaacttatataatccatatgat |
371 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34435552 |
ccatctgatgatggtgatgtattaatacattttttggcactaacttatataatccatatgat |
34435491 |
T |
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