View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10163_low_8 (Length: 366)
Name: NF10163_low_8
Description: NF10163
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10163_low_8 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 271; Significance: 1e-151; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 12 - 348
Target Start/End: Original strand, 43910064 - 43910399
Alignment:
| Q |
12 |
agagattgaaatattaatgggcctaatagacctaaaagtggtgtcaagggttttaagaatgaaagagttaagtgaacaacaattgcattggtgtgnnnnn |
111 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43910064 |
agagattgaaatattaatgggcctaatagacctaaaagtggtgtcaagggttttaagaatgaaagagttaagtgaacaacaattgcattggtgtgaaaaa |
43910163 |
T |
|
| Q |
112 |
nngatgagcaaagtgagagttgtggaagggaaactttgtagagattattcaactccacttttcttcccctcacgttgattgaacaatcactttgtattat |
211 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
43910164 |
aaaatgagcaaagtgagagttgtggaagggaaactttgtagagattattcaactccacttttcttcccctcaagttgattgaacaatcactttgtattat |
43910263 |
T |
|
| Q |
212 |
ttgatgactggattatgtggcatgactgcactcnnnnnnngaatatgattatatgaatatataacactcatcaaataacaaacatgtggaagcatagacc |
311 |
Q |
| |
|
|||||||||||||||||| ||||||| |||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43910264 |
ttgatgactggattatgt-gcatgacagcacacaaaaaaagaatatgattatatgaatatataacactcatcaaataacaaacatgtggaagcatagacc |
43910362 |
T |
|
| Q |
312 |
tttggatccttaattacaatgaaaaggagggataaag |
348 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43910363 |
tttggatccttaattacaatgaaaaggagggataaag |
43910399 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University