View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10164_high_1 (Length: 248)
Name: NF10164_high_1
Description: NF10164
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10164_high_1 |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 213; Significance: 1e-117; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 28 - 248
Target Start/End: Complemental strand, 585616 - 585396
Alignment:
| Q |
28 |
aaatataaatgactaattaaataacttaatcacctttaaaatcgttttaaaaagataagtattttaattaagaaatatctatcttttagaatcatatctt |
127 |
Q |
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| T |
585616 |
aaatataaatgactaattaaataacttaatcacctttaaaatcgttttaaaaagataagtattttaattaagaaatatctatcttttagaatcatatctt |
585517 |
T |
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| Q |
128 |
cacaaaatcttgttgtaaggaggaaaacatggacttagcacgtatttgtgatcacaaaaagcaacataaattgttgcatgaacaacaaacacatcgcaac |
227 |
Q |
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| T |
585516 |
cacaaaatcttgttgtaaggaggaaaacatggacttagcacgtaattgtgatcacaaaaagcaacataaattgttgcatgaacaacaaacacatcgcaac |
585417 |
T |
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| Q |
228 |
atcttgttgatttaaaagtaa |
248 |
Q |
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||||| ||||||||||||||| |
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| T |
585416 |
atcttcttgatttaaaagtaa |
585396 |
T |
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