View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10164_low_1 (Length: 739)
Name: NF10164_low_1
Description: NF10164
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10164_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 701; Significance: 0; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 701; E-Value: 0
Query Start/End: Original strand, 18 - 729
Target Start/End: Original strand, 33674926 - 33675638
Alignment:
| Q |
18 |
tcaagcttatgactatatcaaagctaatacttctgggtgtccttccgcttcaattggaaattctactgtaagcttgcaaactcattcgcatgctcaggat |
117 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33674926 |
tcaagcttatgactatatcaaagctaatacttctgggtgtccttccgcttcaattggaaattctactgtaagcttgcaaactcattcgcatgctcaggat |
33675025 |
T |
|
| Q |
118 |
tatattaaagctaatactactggatgtccttctgcttcaattggaaattcagttataagattgaaagctccatcctcggctgcattttatcctcagaata |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33675026 |
tatattaaagctaatactactggatgtccttctgcttcaattggaaattcagttataagattgaaagctccatcctcggctgcattttatcctcagaata |
33675125 |
T |
|
| Q |
218 |
acttatcacgcagtaaagcttctcatagttctattcatattcctgcttcattgccagtaagtaaaatcggcccaatacaattgtgaaaattgtttatctt |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33675126 |
acttatcacgcagtaaagcttctcatagttctattcatattcctgcttcattgccagtaagtaaaatcggcccaatacaattgtgaaaattgtttatctt |
33675225 |
T |
|
| Q |
318 |
gcactgttgctgcagagcctgtttggtttaggtcttagatgtgttctgaatattcaaaaccgcattggaggaaaaattaatagcttgaatttttacatta |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33675226 |
gcactgttgctgcagagcctgtttggtttaggtcttagatgtgttctggatattcaaaaccgcattggaggaaaaattaatagcttgaatttttacatta |
33675325 |
T |
|
| Q |
418 |
acagtctttgggttatatgcctcatggaaaataattgtccaagaatatccaaagttcttttgcttttctaagaccagtcaattcttacatacataataaa |
517 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33675326 |
acagtctttgggttatatgcctcatggaaaataattgtccaagaatatccaaagttcttttgcttttctaagaccagtcaattcttacatacataataaa |
33675425 |
T |
|
| Q |
518 |
tttgattctattcatttatcttgtaacatgaataaaaggaattagtcctttgatctttctgggctg-ttttttgttgttgcaacttgcaaagcttgccgt |
616 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
33675426 |
tttgattctattcatttatcttgtaacatgaataaaaggaattagtcctttgatctttctgggctgtttttttgttgttgcaacttgcaaagcttgccgt |
33675525 |
T |
|
| Q |
617 |
tgtatataattccttacgcattctttgggttgagttgggctatttttcttcttgattaatcactttggaaatcaaaagctccctctgaagtcaactcttt |
716 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33675526 |
tgtatataattccttacgcattctttgggttgagttgggctatttttcttcttgattaatcactttggaaatcaaaagctccctctgaagtcaactcttt |
33675625 |
T |
|
| Q |
717 |
tatttgatctgtg |
729 |
Q |
| |
|
||||||||||||| |
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|
| T |
33675626 |
tatttgatctgtg |
33675638 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 98; E-Value: 7e-48
Query Start/End: Original strand, 18 - 135
Target Start/End: Original strand, 33674809 - 33674926
Alignment:
| Q |
18 |
tcaagcttatgactatatcaaagctaatacttctgggtgtccttccgcttcaattggaaattctactgtaagcttgcaaactcattcgcatgctcaggat |
117 |
Q |
| |
|
|||||||||||| ||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
33674809 |
tcaagcttatgataatatcaaagctaatagttctgggtgtccttctgcttcaattggaaattctactgtaagattgcaaactcattcgcatgctcaggat |
33674908 |
T |
|
| Q |
118 |
tatattaaagctaatact |
135 |
Q |
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|||||||||||||||||| |
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|
| T |
33674909 |
tatattaaagctaatact |
33674926 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 92; E-Value: 3e-44
Query Start/End: Original strand, 18 - 135
Target Start/End: Original strand, 33674695 - 33674809
Alignment:
| Q |
18 |
tcaagcttatgactatatcaaagctaatacttctgggtgtccttccgcttcaattggaaattctactgtaagcttgcaaactcattcgcatgctcaggat |
117 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
33674695 |
tcaagcttatgattatatcaaagctaatacttctgggtgtcct---gcttcaattggaaattctactgtaaaattgcaaactcattcgcatgctcaggat |
33674791 |
T |
|
| Q |
118 |
tatattaaagctaatact |
135 |
Q |
| |
|
|||||||||||||||||| |
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|
| T |
33674792 |
tatattaaagctaatact |
33674809 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 88; E-Value: 6e-42
Query Start/End: Original strand, 18 - 167
Target Start/End: Original strand, 33674494 - 33674640
Alignment:
| Q |
18 |
tcaagcttatgactatatcaaagctaatacttctgggtgtccttccgcttcaattggaaattctactgtaagcttgcaaactcattcgcatgctcaggat |
117 |
Q |
| |
|
||||||| |||| | ||||||||||||| ||||||||||| |||| |||||||||||||||||||| |||| ||||||||||||||||||||||||||| |
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| T |
33674494 |
tcaagctcatgattctatcaaagctaatgcttctgggtgtacttctacttcaattggaaattctactataagattgcaaactcattcgcatgctcaggat |
33674593 |
T |
|
| Q |
118 |
tatattaaagctaatactactggatgtccttctgcttcaattggaaattc |
167 |
Q |
| |
|
||||| |||||||||||| |||| |||| ||||||||||||||||||| |
|
|
| T |
33674594 |
tatatcaaagctaatacttctgggtgtc---ctgcttcaattggaaattc |
33674640 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 83; E-Value: 6e-39
Query Start/End: Original strand, 31 - 135
Target Start/End: Original strand, 33674594 - 33674695
Alignment:
| Q |
31 |
tatatcaaagctaatacttctgggtgtccttccgcttcaattggaaattctactgtaagcttgcaaactcattcgcatgctcaggattatattaaagcta |
130 |
Q |
| |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
33674594 |
tatatcaaagctaatacttctgggtgtcct---gcttcaattggaaattctactgtaaaattgcaaactcattcgcatgctcaggattatattaaagcta |
33674690 |
T |
|
| Q |
131 |
atact |
135 |
Q |
| |
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||||| |
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|
| T |
33674691 |
atact |
33674695 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 119 - 167
Target Start/End: Original strand, 33674823 - 33674871
Alignment:
| Q |
119 |
atattaaagctaatactactggatgtccttctgcttcaattggaaattc |
167 |
Q |
| |
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|||| |||||||||| | |||| |||||||||||||||||||||||||| |
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|
| T |
33674823 |
atatcaaagctaatagttctgggtgtccttctgcttcaattggaaattc |
33674871 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 99 - 180
Target Start/End: Original strand, 33674488 - 33674569
Alignment:
| Q |
99 |
tcattcgcatgctcaggattatattaaagctaatactactggatgtccttctgcttcaattggaaattcagttataagattg |
180 |
Q |
| |
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|||||| || ||||| |||| ||| ||||||||| || |||| ||| ||||| |||||||||||||||| |||||||||| |
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|
| T |
33674488 |
tcattctcaagctcatgattctatcaaagctaatgcttctgggtgtacttctacttcaattggaaattctactataagattg |
33674569 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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