View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10164_low_12 (Length: 271)
Name: NF10164_low_12
Description: NF10164
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10164_low_12 |
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Alignment Details
Target: chr8 (Bit Score: 171; Significance: 7e-92; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 171; E-Value: 7e-92
Query Start/End: Original strand, 21 - 218
Target Start/End: Original strand, 10593808 - 10594006
Alignment:
| Q |
21 |
aaacaatcctaaacttcaacaaaaacaaaacgagacatgttgtcacttacatgtcggattttagaacaaatgtgtcaacaaatatgatttctttgacgtt |
120 |
Q |
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| T |
10593808 |
aaacaatcctaaacttcaagaaaaacaaaacgagacatgttgtcacttacttgtcggattttagaacaaatgtgtcaacaaatatgatttctttgacgtt |
10593907 |
T |
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| Q |
121 |
gatttgttaaagataaaggattgaatgaataaataaatgagttttttgtt-tcccaataatcaagtttgacaactttcaaaccaacaaatattgtaacc |
218 |
Q |
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| T |
10593908 |
gatttgttaaagataaaggaatgaatgaataaataaatgagtttttttttcttccaataatcaagtttgacaactttcaaaccaacaaatattgtaacc |
10594006 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 28 - 154
Target Start/End: Complemental strand, 32869192 - 32869068
Alignment:
| Q |
28 |
cctaaacttcaacaaaaacaaaacgagacatgttgtcacttacatgtcggattttagaacaaatgtgtcaacaaatatgatttctttgacgttgatttgt |
127 |
Q |
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|||||||| ||||||||||||| |||| |||| ||||||| || || |||||||| ||||||| ||||| ||| ||||||||||| |||| ||||| |
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| T |
32869192 |
cctaaactacaacaaaaacaaacagaga--tgttcacacttacttgctgggttttagaagaaatgtgccaacatatacgatttctttgatgttggtttgt |
32869095 |
T |
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| Q |
128 |
taaagataaaggattgaatgaataaat |
154 |
Q |
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| || | |||||||||||||| |||| |
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| T |
32869094 |
tgaaagttaaggattgaatgaagaaat |
32869068 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 79 - 141
Target Start/End: Original strand, 40055128 - 40055190
Alignment:
| Q |
79 |
ttttagaacaaatgtgtcaacaaatatgatttctttgacgttgatttgttaaagataaaggat |
141 |
Q |
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|||||||| ||||||||||||||||| ||||| |||||| ||| ||||| || |||||||||| |
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| T |
40055128 |
ttttagaagaaatgtgtcaacaaatacgatttttttgacattggtttgtcaatgataaaggat |
40055190 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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