View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10164_low_14 (Length: 252)

Name: NF10164_low_14
Description: NF10164
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10164_low_14
NF10164_low_14
[»] chr4 (14 HSPs)
chr4 (13-252)||(4335410-4335649)
chr4 (51-250)||(4123754-4123953)
chr4 (56-250)||(4344713-4344907)
chr4 (87-250)||(4320473-4320633)
chr4 (71-250)||(4361144-4361323)
chr4 (109-251)||(6498399-6498541)
chr4 (127-251)||(6753026-6753150)
chr4 (109-251)||(6545321-6545463)
chr4 (109-236)||(6588069-6588196)
chr4 (148-251)||(6621419-6621522)
chr4 (197-251)||(4133386-4133440)
chr4 (109-251)||(6728472-6728614)
chr4 (109-251)||(6651133-6651275)
chr4 (109-251)||(6815536-6815678)
[»] chr6 (21 HSPs)
chr6 (111-227)||(5066569-5066685)
chr6 (111-248)||(5102489-5102626)
chr6 (111-239)||(5073783-5073911)
chr6 (111-227)||(5157503-5157619)
chr6 (116-250)||(5344928-5345062)
chr6 (105-250)||(5096775-5096920)
chr6 (111-250)||(5181802-5181941)
chr6 (116-250)||(5176806-5176940)
chr6 (116-237)||(5243793-5243914)
chr6 (114-250)||(5128295-5128431)
chr6 (111-239)||(5354489-5354617)
chr6 (116-250)||(5278633-5278767)
chr6 (111-227)||(5426000-5426116)
chr6 (116-247)||(5690039-5690170)
chr6 (150-227)||(5350484-5350561)
chr6 (114-227)||(5370661-5370774)
chr6 (111-239)||(5447665-5447793)
chr6 (111-250)||(5434102-5434241)
chr6 (126-252)||(5383391-5383517)
chr6 (116-250)||(5397017-5397151)
chr6 (111-239)||(5284264-5284392)
[»] chr5 (5 HSPs)
chr5 (111-250)||(8877676-8877815)
chr5 (126-206)||(12599062-12599142)
chr5 (126-245)||(20838704-20838823)
chr5 (126-245)||(20812349-20812468)
chr5 (127-209)||(15803019-15803101)
[»] chr7 (2 HSPs)
chr7 (114-250)||(36213707-36213843)
chr7 (126-251)||(18935452-18935577)
[»] scaffold0294 (1 HSPs)
scaffold0294 (111-252)||(8775-8916)
[»] chr3 (5 HSPs)
chr3 (111-176)||(47986747-47986812)
chr3 (111-176)||(47996034-47996099)
chr3 (111-176)||(48005321-48005386)
chr3 (111-176)||(48014606-48014671)
chr3 (116-209)||(6905806-6905899)
[»] chr8 (7 HSPs)
chr8 (126-230)||(3262637-3262740)
chr8 (126-245)||(31175919-31176038)
chr8 (116-182)||(3407323-3407389)
chr8 (116-209)||(3391536-3391629)
chr8 (126-209)||(3314966-3315049)
chr8 (127-209)||(3364277-3364359)
chr8 (126-207)||(3325010-3325091)
[»] scaffold0286 (1 HSPs)
scaffold0286 (148-251)||(6725-6828)
[»] scaffold0813 (1 HSPs)
scaffold0813 (109-251)||(4699-4841)


Alignment Details
Target: chr4 (Bit Score: 220; Significance: 1e-121; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 13 - 252
Target Start/End: Complemental strand, 4335649 - 4335410
Alignment:
Q  13 caaaggcattgaagtttaggaaggactttgaaaacagatgatacattcaaagaaatatgggatgacattccaacagctgtttgaacagcgggtgagacat 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||| ||||||||||    
T  4335649 caaaggcattgaagtttaggaaggactttgaaaacagatgatacattcaaagaaacatggggtgacattccaacagctgtttgaacagctggtgagacat 4335550  T
Q  113 tatttgttggtaccatccaagaccaaatgatagacggaaacacatcacgggagaatccttcatacccacacaaagagatatagccaatgctttttgactt 212  Q
    |||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4335549 tatttgttggtaccatccaagaccaaattatagaaggaaacacatcacgggagaatccttcatacccacacaaagagatatagccaatgctttttgactt 4335450  T
Q  213 tactactgaaaagggcacttttgttataccagtgttatct 252  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  4335449 tactactgaaaagggcacttttgttataccagtgttatct 4335410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 51 - 250
Target Start/End: Original strand, 4123754 - 4123953
Alignment:
Q  51 tgatacattcaaagaaatatgggatgacattccaacagctgtttgaacagcgggtgagacattatttgttggtaccatccaagaccaaatgatagacgga 150  Q
    |||| ||| |||||||| | ||||||||||||| |||||||||||||||||||||| || |||||||||||||| |||||||||| |||||||||| |||    
T  4123754 tgatgcatgcaaagaaacaagggatgacattccgacagctgtttgaacagcgggtgggagattatttgttggtaacatccaagacgaaatgatagaagga 4123853  T
Q  151 aacacatcacgggagaatccttcatacccacacaaagagatatagccaatgctttttgactttactactgaaaagggcacttttgttataccagtgttat 250  Q
    ||||||||||| |||||||||||||| ||||||| ||| ||| | ||||||||||||||| ||||||| ||||||||||||||||||||| |||| ||||    
T  4123854 aacacatcacgagagaatccttcatatccacacagagaaataaatccaatgctttttgaccttactaccgaaaagggcacttttgttatagcagtattat 4123953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 56 - 250
Target Start/End: Complemental strand, 4344907 - 4344713
Alignment:
Q  56 cattcaaagaaatatgggatgacattccaacagctgtttgaacagcgggtgagacattatttgttggtaccatccaagaccaaatgatagacggaaacac 155  Q
    |||| ||||||| | | |||||||| ||| ||| |||||||| || ||| |||| |  ||||||||||  ||||||||||||||||||||| ||||||||    
T  4344907 catttaaagaaacaagcgatgacatcccagcagttgtttgaaaagtgggcgagagaccatttgttggtgacatccaagaccaaatgatagaaggaaacac 4344808  T
Q  156 atcacgggagaatccttcatacccacacaaagagatatagccaatgctttttgactttactactgaaaagggcacttttgttataccagtgttat 250  Q
    |||||| |||||||||||||| ||||||||||| ||| | ||||||| ||||||| |||||||||||||||| |||||||||||| |||||||||    
T  4344807 atcacgtgagaatccttcatatccacacaaagaaataaatccaatgcgttttgaccttactactgaaaagggtacttttgttatagcagtgttat 4344713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 87 - 250
Target Start/End: Original strand, 4320473 - 4320633
Alignment:
Q  87 agctgtttgaacagcgggtgagacattatttgttggtaccatccaagaccaaatgatagacggaaacacatcacgggagaatccttcatacccacacaaa 186  Q
    ||||||||||| ||||||||| | |||||||| ||    ||||||||||||||||||||| |||||||||||||| |||||||||||||| ||||||| |    
T  4320473 agctgtttgaaaagcgggtgacagattatttggtga---catccaagaccaaatgatagaaggaaacacatcacgtgagaatccttcatatccacacaga 4320569  T
Q  187 gagatatagccaatgctttttgactttactactgaaaagggcacttttgttataccagtgttat 250  Q
    || ||| | ||||||||||||||| |||||| ||||||||| ||||||||||||||||| ||||    
T  4320570 gaaataaatccaatgctttttgaccttactaatgaaaagggaacttttgttataccagtattat 4320633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 71 - 250
Target Start/End: Complemental strand, 4361323 - 4361144
Alignment:
Q  71 gggatgacattccaacagctgtttgaacagcgggtgagacattatttgttggtaccatccaagaccaaatgatagacggaaacacatcacgggagaatcc 170  Q
    |||||||||| ||| ||| |||||||| || ||| |||| |  ||||||||||  |||||||||| |||||||||| |||||||||||||| ||||||||    
T  4361323 gggatgacatcccagcagttgtttgaaaagtgggcgagagaccatttgttggtgacatccaagacgaaatgatagaaggaaacacatcacgtgagaatcc 4361224  T
Q  171 ttcatacccacacaaagagatatagccaatgctttttgactttactactgaaaagggcacttttgttataccagtgttat 250  Q
    |||||| ||||||||||| ||| | ||||||| ||||||  |||| | ||||||||| ||||||||||||||||||||||    
T  4361223 ttcatatccacacaaagaaataaatccaatgcgttttgatcttacaattgaaaagggtacttttgttataccagtgttat 4361144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 109 - 251
Target Start/End: Original strand, 6498399 - 6498541
Alignment:
Q  109 acattatttgttggtaccatccaagaccaaatgatagacggaaacacatcacgggagaatccttcatacccacacaaagagatatagccaatgctttttg 208  Q
    |||||||||| ||||  ||||||||||| ||||| ||| ||||| |||||||| || ||||||| | | ||||  ||||| || || |||||||||||||    
T  6498399 acattatttgatggtgacatccaagaccgaatgagagaaggaaatacatcacgtgaaaatcctttaaatccacctaaagaaatgtatccaatgctttttg 6498498  T
Q  209 actttactactgaaaagggcacttttgttataccagtgttatc 251  Q
    |  |||||| ||||||||| |||||||||||| |||| |||||    
T  6498499 atcttactattgaaaagggaacttttgttatagcagtcttatc 6498541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 127 - 251
Target Start/End: Complemental strand, 6753150 - 6753026
Alignment:
Q  127 atccaagaccaaatgatagacggaaacacatcacgggagaatccttcatacccacacaaagagatatagccaatgctttttgactttactactgaaaagg 226  Q
    |||||||||| ||||| ||| || || |||||||| || ||||||||| | ||||  ||||| ||||| |||||||||||  |  |||||| ||||||||    
T  6753150 atccaagaccgaatgagagaagggaatacatcacgtgaaaatccttcaaagccacgaaaagaaatatatccaatgcttttcaatcttactattgaaaagg 6753051  T
Q  227 gcacttttgttataccagtgttatc 251  Q
    |||||||||||||| |||| |||||    
T  6753050 gcacttttgttatagcagtcttatc 6753026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 109 - 251
Target Start/End: Original strand, 6545321 - 6545463
Alignment:
Q  109 acattatttgttggtaccatccaagaccaaatgatagacggaaacacatcacgggagaatccttcatacccacacaaagagatatagccaatgctttttg 208  Q
    |||||||||| ||||  || |||||||| ||||| ||| || || |||||||| || ||||||||| | ||||  ||||| ||||| |||||||||||      
T  6545321 acattatttgatggtgacagccaagaccgaatgagagaagggaatacatcacgtgaaaatccttcaaagccacgaaaagaaatatatccaatgcttttca 6545420  T
Q  209 actttactactgaaaagggcacttttgttataccagtgttatc 251  Q
    |  | |||| |||||||||||||||||||||| |||| |||||    
T  6545421 atctaactattgaaaagggcacttttgttatagcagtcttatc 6545463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 109 - 236
Target Start/End: Original strand, 6588069 - 6588196
Alignment:
Q  109 acattatttgttggtaccatccaagaccaaatgatagacggaaacacatcacgggagaatccttcatacccacacaaagagatatagccaatgctttttg 208  Q
    |||||||||| |||   ||||||||||| ||||| ||| || || |||||||| || ||||||||| | ||||| ||||| ||||| |||||||||||      
T  6588069 acattatttgatggcgacatccaagaccgaatgagagaagggaatacatcacgtgaaaatccttcaaagccacaaaaagaaatatatccaatgcttttca 6588168  T
Q  209 actttactactgaaaagggcacttttgt 236  Q
     | |||||| |||||| |||||||||||    
T  6588169 tccttactattgaaaatggcacttttgt 6588196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 148 - 251
Target Start/End: Original strand, 6621419 - 6621522
Alignment:
Q  148 ggaaacacatcacgggagaatccttcatacccacacaaagagatatagccaatgctttttgactttactactgaaaagggcacttttgttataccagtgt 247  Q
    ||||||||||| || || ||||||||| | ||||| ||||| ||||| |||||| |||| ||   ||||| ||||||||| |||||||||||| |||| |    
T  6621419 ggaaacacatcccgtgaaaatccttcaaatccacataaagaaatatatccaatgtttttagatcgtactattgaaaagggaacttttgttatagcagtct 6621518  T
Q  248 tatc 251  Q
    ||||    
T  6621519 tatc 6621522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 197 - 251
Target Start/End: Original strand, 4133386 - 4133440
Alignment:
Q  197 caatgctttttgactttactactgaaaagggcacttttgttataccagtgttatc 251  Q
    |||||||||||||| || | |||||||||||||||||||||||  ||||||||||    
T  4133386 caatgctttttgaccttgcgactgaaaagggcacttttgttattgcagtgttatc 4133440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 109 - 251
Target Start/End: Complemental strand, 6728614 - 6728472
Alignment:
Q  109 acattatttgttggtaccatccaagaccaaatgatagacggaaacacatcacgggagaatccttcatacccacacaaagagatatagccaatgctttttg 208  Q
    |||||||||| |||   ||||||||||||||  | ||| || || |||||||| || ||||||||| | ||||  ||||| ||||| ||||| |||||      
T  6728614 acattatttgatggcgacatccaagaccaaacaagagaagggaatacatcacgtgaaaatccttcaaagccacgaaaagaaatatatccaatacttttca 6728515  T
Q  209 actttactactgaaaagggcacttttgttataccagtgttatc 251  Q
    |  |||||| |||||| ||||||||||||||| |||| |||||    
T  6728514 atcttactattgaaaatggcacttttgttatagcagtcttatc 6728472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 109 - 251
Target Start/End: Complemental strand, 6651275 - 6651133
Alignment:
Q  109 acattatttgttggtaccatccaagaccaaatgatagacggaaacacatcacgggagaatccttcatacccacacaaagagatatagccaatgctttttg 208  Q
    |||||| ||| ||||  ||||||||||| || || | | ||||| ||||| || || ||||||||| | ||||| | ||| ||||| |||||| || ||     
T  6651275 acattagttgatggtgacatccaagaccgaacgagaaaaggaaatacatctcgtgaaaatccttcaaagccacatagagaaatatatccaatgtttctta 6651176  T
Q  209 actttactactgaaaagggcacttttgttataccagtgttatc 251  Q
    |  |||||| |||||| ||||||||||||||| |||| |||||    
T  6651175 atcttactattgaaaacggcacttttgttatagcagtcttatc 6651133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 109 - 251
Target Start/End: Complemental strand, 6815678 - 6815536
Alignment:
Q  109 acattatttgttggtaccatccaagaccaaatgatagacggaaacacatcacgggagaatccttcatacccacacaaagagatatagccaatgctttttg 208  Q
    |||||||||| ||||  ||||||||| | || || ||| | ||| |||||||| |  ||||||||| | ||||  ||||| ||||| |||||||||||      
T  6815678 acattatttgatggtgacatccaagagcgaacgagagaagaaaatacatcacgtgtaaatccttcaaagccacctaaagaaatatatccaatgcttttca 6815579  T
Q  209 actttactactgaaaagggcacttttgttataccagtgttatc 251  Q
    |  |||| |||||||| ||||||||| ||||| |||| |||||    
T  6815578 atcttaccactgaaaatggcactttttttatagcagtcttatc 6815536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 77; Significance: 8e-36; HSPs: 21)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 111 - 227
Target Start/End: Original strand, 5066569 - 5066685
Alignment:
Q  111 attatttgttggtaccatccaagaccaaatgatagacggaaacacatcacgggagaatccttcatacccacacaaagagatatagccaatgctttttgac 210  Q
    |||||||||||||  |||||||||| |||||||||| |||||||||||||| |||||||||||||| || ||||||||||| || |||||||||||||||    
T  5066569 attatttgttggtgacatccaagacaaaatgatagatggaaacacatcacgcgagaatccttcatagccgcacaaagagatgtatccaatgctttttgac 5066668  T
Q  211 tttactactgaaaaggg 227  Q
     ||||||||||||||||    
T  5066669 cttactactgaaaaggg 5066685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 111 - 248
Target Start/End: Original strand, 5102489 - 5102626
Alignment:
Q  111 attatttgttggtaccatccaagaccaaatgatagacggaaacacatcacgggagaatccttcatacccacacaaagagatatagccaatgctttttgac 210  Q
    |||||||||||||  |||||||||||| |||||||| |||||||||||| | || | ||||||||| ||||| | ||||||||| |||||||||||||||    
T  5102489 attatttgttggtgacatccaagaccagatgatagatggaaacacatcatgtgaaagtccttcatagccacatagagagatatatccaatgctttttgac 5102588  T
Q  211 tttactactgaaaagggcacttttgttataccagtgtt 248  Q
     |||||||||||||||||||| |||||||  |||||||    
T  5102589 cttactactgaaaagggcactgttgttattgcagtgtt 5102626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 111 - 239
Target Start/End: Original strand, 5073783 - 5073911
Alignment:
Q  111 attatttgttggtaccatccaagaccaaatgatagacggaaacacatcacgggagaatccttcatacccacacaaagagatatagccaatgctttttgac 210  Q
    ||||||||| |||  |||||||||||||||||| || || ||||||||||| |||||||||||||| || |||||||| ||||| ||||||||||| |||    
T  5073783 attatttgtcggtgacatccaagaccaaatgatcgatgggaacacatcacgtgagaatccttcatagccgcacaaagaaatatatccaatgcttttcgac 5073882  T
Q  211 tttactactgaaaagggcacttttgttat 239  Q
     |||||||||||||||||||| |||||||    
T  5073883 cttactactgaaaagggcactcttgttat 5073911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 111 - 227
Target Start/End: Original strand, 5157503 - 5157619
Alignment:
Q  111 attatttgttggtaccatccaagaccaaatgatagacggaaacacatcacgggagaatccttcatacccacacaaagagatatagccaatgctttttgac 210  Q
    |||||||||||||  ||||||||||||||||||||| |||||||||||||| || ||||||||||| || | ||||||||| || |||||||||||||||    
T  5157503 attatttgttggtgacatccaagaccaaatgatagatggaaacacatcacgagaaaatccttcatagccgcccaaagagatgtatccaatgctttttgac 5157602  T
Q  211 tttactactgaaaaggg 227  Q
     ||||||||||||||||    
T  5157603 cttactactgaaaaggg 5157619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 116 - 250
Target Start/End: Complemental strand, 5345062 - 5344928
Alignment:
Q  116 ttgttggtaccatccaagaccaaatgatagacggaaacacatcacgggagaatccttcatacccacacaaagagatatagccaatgctttttgactttac 215  Q
    ||||||||  |||||||||||| |||||||| ||||| ||||| || |||||||||||||| ||||||| ||| ||||| ||||||||||||||| ||||    
T  5345062 ttgttggtgacatccaagaccagatgatagatggaaatacatcgcgtgagaatccttcatagccacacagagaaatatatccaatgctttttgaccttac 5344963  T
Q  216 tactgaaaagggcacttttgttataccagtgttat 250  Q
    |||| ||||||| |||||||||||  |||||||||    
T  5344962 tactaaaaagggaacttttgttattgcagtgttat 5344928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 105 - 250
Target Start/End: Complemental strand, 5096920 - 5096775
Alignment:
Q  105 tgagacattatttgttggtaccatccaagaccaaatgatagacggaaacacatcacgggagaatccttcatacccacacaaagagatatagccaatgctt 204  Q
    ||||| |||||||||||||  || ||||||||| ||||||||||||||||||||||| || ||||||||||  ||||| | ||| || || |||||||||    
T  5096920 tgagagattatttgttggtgacaaccaagaccagatgatagacggaaacacatcacgtgaaaatccttcatggccacatagagaaatgtatccaatgctt 5096821  T
Q  205 tttgactttactactgaaaagggcacttttgttataccagtgttat 250  Q
    |||||| |||||||||||||||| ||| || |||| ||||||||||    
T  5096820 tttgaccttactactgaaaagggtactctttttattccagtgttat 5096775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 111 - 250
Target Start/End: Original strand, 5181802 - 5181941
Alignment:
Q  111 attatttgttggtaccatccaagaccaaatgatagacggaaacacatcacgggagaatccttcatacccacacaaagagatatagccaatgctttttgac 210  Q
    ||||||||| |||  |||||||||||||||||| |  |||||||||||| | |||||||||||||| |||||||| || |||||  |||||||||| |||    
T  5181802 attatttgtcggtgacatccaagaccaaatgatcgctggaaacacatcatgtgagaatccttcatatccacacaaggaaatatatgcaatgcttttggac 5181901  T
Q  211 tttactactgaaaagggcacttttgttataccagtgttat 250  Q
    |||||||||||||| |||||| |||||||  |||||||||    
T  5181902 tttactactgaaaacggcactcttgttattgcagtgttat 5181941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 116 - 250
Target Start/End: Complemental strand, 5176940 - 5176806
Alignment:
Q  116 ttgttggtaccatccaagaccaaatgatagacggaaacacatcacgggagaatccttcatacccacacaaagagatatagccaatgctttttgactttac 215  Q
    ||||||||  |||||||||||||||||| || ||||| | |||||| |||||||||||||| || ||||||||||| || ||||||||||||||| ||||    
T  5176940 ttgttggtgacatccaagaccaaatgattgatggaaatatatcacgtgagaatccttcatagccgcacaaagagatgtatccaatgctttttgaccttac 5176841  T
Q  216 tactgaaaagggcacttttgttataccagtgttat 250  Q
    || ||| ||||||||| |||||||  |||||||||    
T  5176840 tattgacaagggcactcttgttattgcagtgttat 5176806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 116 - 237
Target Start/End: Original strand, 5243793 - 5243914
Alignment:
Q  116 ttgttggtaccatccaagaccaaatgatagacggaaacacatcacgggagaatccttcatacccacacaaagagatatagccaatgctttttgactttac 215  Q
    ||||||||  |||||||||||| |||||||| ||||| ||||| || || ||||||||||| ||||||||||| ||||| || |||||||||||| ||||    
T  5243793 ttgttggtgacatccaagaccagatgatagatggaaatacatcgcgtgaaaatccttcatagccacacaaagaaatatatccgatgctttttgaccttac 5243892  T
Q  216 tactgaaaagggcacttttgtt 237  Q
    |||||||||||||||| |||||    
T  5243893 tactgaaaagggcactcttgtt 5243914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 114 - 250
Target Start/End: Original strand, 5128295 - 5128431
Alignment:
Q  114 atttgttggtaccatccaagaccaaatgatagacggaaacacatcacgggagaatccttcatacccacacaaagagatatagccaatgctttttgacttt 213  Q
    ||||||||||  |||||||||||| |||||||| |||||||||||||  || ||||||||||  || |||| ||||||||| ||||||||||||||| ||    
T  5128295 atttgttggtgacatccaagaccagatgatagatggaaacacatcacttgaaaatccttcatggccgcacagagagatatatccaatgctttttgacctt 5128394  T
Q  214 actactgaaaagggcacttttgttataccagtgttat 250  Q
    |||||||||||||| ||| || ||||  |||||||||    
T  5128395 actactgaaaagggtactctttttattgcagtgttat 5128431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 111 - 239
Target Start/End: Original strand, 5354489 - 5354617
Alignment:
Q  111 attatttgttggtaccatccaagaccaaatgatagacggaaacacatcacgggagaatccttcatacccacacaaagagatatagccaatgctttttgac 210  Q
    |||||||||||||  ||||||||||||||||||||| |||||||||||||| |||||||||||||| ||||| ||||| ||||| ||||||||||| ||     
T  5354489 attatttgttggtgacatccaagaccaaatgatagatggaaacacatcacgtgagaatccttcatagccacataaagaaatatatccaatgcttttggaa 5354588  T
Q  211 tttactactgaaaagggcacttttgttat 239  Q
     | |||| ||| ||||| ||| |||||||    
T  5354589 ctaactattgagaagggtactcttgttat 5354617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 116 - 250
Target Start/End: Complemental strand, 5278767 - 5278633
Alignment:
Q  116 ttgttggtaccatccaagaccaaatgatagacggaaacacatcacgggagaatccttcatacccacacaaagagatatagccaatgctttttgactttac 215  Q
    ||||||||  |||||||||||||||||| || ||||| | |||||| |||||||||||||| || ||||||||||| || ||||||||||||||| ||||    
T  5278767 ttgttggtgacatccaagaccaaatgattgatggaaatatatcacgtgagaatccttcatagccgcacaaagagatgtatccaatgctttttgaccttac 5278668  T
Q  216 tactgaaaagggcacttttgttataccagtgttat 250  Q
    ||  || ||||||||| |||||||  |||||||||    
T  5278667 tatagacaagggcactcttgttattgcagtgttat 5278633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 111 - 227
Target Start/End: Complemental strand, 5426116 - 5426000
Alignment:
Q  111 attatttgttggtaccatccaagaccaaatgatagacggaaacacatcacgggagaatccttcatacccacacaaagagatatagccaatgctttttgac 210  Q
    |||||||||||||  |||||||||||||||||| |  |||||||||||||| || ||||||||||| || ||||||||||| || |||||||||| ||||    
T  5426116 attatttgttggtgacatccaagaccaaatgatcgctggaaacacatcacgtgaaaatccttcatagccgcacaaagagatgtatccaatgctttgtgac 5426017  T
Q  211 tttactactgaaaaggg 227  Q
     |||| |||||||||||    
T  5426016 attaccactgaaaaggg 5426000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 116 - 247
Target Start/End: Original strand, 5690039 - 5690170
Alignment:
Q  116 ttgttggtaccatccaagaccaaatgatagacggaaacacatcacgggagaatccttcatacccacacaaagagatatagccaatgctttttgactttac 215  Q
    ||||||||  ||||||||||||||||||||| ||||| | |||||| |||||||||||||  || |||| ||| ||||| ||||||||||||||| ||||    
T  5690039 ttgttggtgacatccaagaccaaatgatagatggaaatatatcacgtgagaatccttcatgtccgcacagagaaatatacccaatgctttttgaccttac 5690138  T
Q  216 tactgaaaagggcacttttgttataccagtgt 247  Q
     | ||||||||||||  ||||||| |||||||    
T  5690139 aattgaaaagggcacacttgttattccagtgt 5690170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 150 - 227
Target Start/End: Complemental strand, 5350561 - 5350484
Alignment:
Q  150 aaacacatcacgggagaatccttcatacccacacaaagagatatagccaatgctttttgactttactactgaaaaggg 227  Q
    |||||||||||| || ||||||||||| || ||||||||||| || ||||||||||||||| ||||||||||||||||    
T  5350561 aaacacatcacgtgaaaatccttcatagccgcacaaagagatgtatccaatgctttttgaccttactactgaaaaggg 5350484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 114 - 227
Target Start/End: Complemental strand, 5370774 - 5370661
Alignment:
Q  114 atttgttggtaccatccaagaccaaatgatagacggaaacacatcacgggagaatccttcatacccacacaaagagatatagccaatgctttttgacttt 213  Q
    ||||||||||  ||||||||||||||||||||| ||||| |||||| | || |||||| |||  |||||||| || || || |||||||||||||||  |    
T  5370774 atttgttggtgacatccaagaccaaatgatagatggaaaaacatcatgtgaaaatcctacatggccacacaatgaaatgtatccaatgctttttgaccgt 5370675  T
Q  214 actactgaaaaggg 227  Q
    ||||||||||||||    
T  5370674 actactgaaaaggg 5370661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 111 - 239
Target Start/End: Complemental strand, 5447793 - 5447665
Alignment:
Q  111 attatttgttggtaccatccaagaccaaatgatagacggaaacacatcacgggagaatccttcatacccacacaaagagatatagccaatgctttttgac 210  Q
    ||||||| |||||  ||||||||||| ||| ||||| |||||||||||| | ||| |||||||| | || |||||||| ||||| |||||||| || |||    
T  5447793 attatttcttggtgacatccaagaccgaataatagatggaaacacatcatgcgaggatccttcaaatccgcacaaagaaatatatccaatgctcttcgac 5447694  T
Q  211 tttactactgaaaagggcacttttgttat 239  Q
     | ||||| |||||||||||| |||||||    
T  5447693 ctaactaccgaaaagggcactgttgttat 5447665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 111 - 250
Target Start/End: Complemental strand, 5434241 - 5434102
Alignment:
Q  111 attatttgttggtaccatccaagaccaaatgatagacggaaacacatcacgggagaatccttcatacccacacaaagagatatagccaatgctttttgac 210  Q
    |||||||||||||  ||||||||||  ||||||| | ||||| | |||  | |||||||||||||| || |||||||||||||| ||||||||||||||     
T  5434241 attatttgttggtgacatccaagactgaatgataaatggaaataaatcgtgtgagaatccttcataaccgcacaaagagatatatccaatgctttttgat 5434142  T
Q  211 tttactactgaaaagggcacttttgttataccagtgttat 250  Q
     | | ||||||||  |||||| || ||||  |||||||||    
T  5434141 ctcagtactgaaagaggcactctttttattgcagtgttat 5434102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 126 - 252
Target Start/End: Complemental strand, 5383517 - 5383391
Alignment:
Q  126 catccaagaccaaatgatagacggaaacacatcacgggagaatccttcatacccacacaaagagatatagccaatgctttttgactttactactgaaaag 225  Q
    ||||||||||  |||||| || |||||||||||||| |||||||||||||  || |||||||| |||||  |||| ||||||||| |||  | ||||| |    
T  5383517 catccaagacttaatgatggatggaaacacatcacgtgagaatccttcatggccgcacaaagaaatatatacaatactttttgaccttaaaattgaaagg 5383418  T
Q  226 ggcacttttgttataccagtgttatct 252  Q
    || ||| |||||||  |||||||||||    
T  5383417 ggaactcttgttattgcagtgttatct 5383391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 116 - 250
Target Start/End: Complemental strand, 5397151 - 5397017
Alignment:
Q  116 ttgttggtaccatccaagaccaaatgatagacggaaacacatcacgggagaatccttcatacccacacaaagagatatagccaatgctttttgactttac 215  Q
    ||||||||  |||||||||| |||||||||  |||||||| ||||  || ||||||||||| || |||||||||||| | |||||||||||| || |||     
T  5397151 ttgttggtgacatccaagacgaaatgatagctggaaacacttcacatgaaaatccttcatatccgcacaaagagataaatccaatgctttttaaccttaa 5397052  T
Q  216 tactgaaaagggcacttttgttataccagtgttat 250  Q
     | |||||| |||||| || ||||  |||||||||    
T  5397051 aattgaaaacggcactctttttattgcagtgttat 5397017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 111 - 239
Target Start/End: Original strand, 5284264 - 5284392
Alignment:
Q  111 attatttgttggtaccatccaagaccaaatgatagacggaaacacatcacgggagaatccttcatacccacacaaagagatatagccaatgctttttgac 210  Q
    ||||||||||| |  |||||| ||| |||| ||  | ||||||||||| |  || | ||| ||||| || |||||||  ||||| ||||||||||| |||    
T  5284264 attatttgttgctgacatccatgacaaaattattaatggaaacacatcgcttgaaagtccctcataaccgcacaaagcaatatatccaatgcttttcgac 5284363  T
Q  211 tttactactgaaaagggcacttttgttat 239  Q
     |||||||||||||||||||| |||||||    
T  5284364 cttactactgaaaagggcactcttgttat 5284392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 72; Significance: 7e-33; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 111 - 250
Target Start/End: Complemental strand, 8877815 - 8877676
Alignment:
Q  111 attatttgttggtaccatccaagaccaaatgatagacggaaacacatcacgggagaatccttcatacccacacaaagagatatagccaatgctttttgac 210  Q
    |||||||||||||  ||||||||||||||||||||| |||||||||||||| || ||||||||||| || |||||||| ||||| |||||||||||||||    
T  8877815 attatttgttggtgacatccaagaccaaatgatagatggaaacacatcacgcgaaaatccttcatagccgcacaaagaaatatatccaatgctttttgac 8877716  T
Q  211 tttactactgaaaagggcacttttgttataccagtgttat 250  Q
     |||||| |||||| || ||| || ||||  |||||||||    
T  8877715 cttactaatgaaaatggtactctttttattgcagtgttat 8877676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 126 - 206
Target Start/End: Original strand, 12599062 - 12599142
Alignment:
Q  126 catccaagaccaaatgatagacggaaacacatcacgggagaatccttcatacccacacaaagagatatagccaatgctttt 206  Q
    ||||||||||||| ||| ||| ||||| |||||||| || ||||||||||| |||||||| || ||||| |||||||||||    
T  12599062 catccaagaccaattgagagaaggaaaaacatcacgtgataatccttcatatccacacaaggatatatatccaatgctttt 12599142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 126 - 245
Target Start/End: Complemental strand, 20838823 - 20838704
Alignment:
Q  126 catccaagaccaaatgatagacggaaacacatcacgggagaatccttcatacccacacaaagagatatagccaatgctttttgactttactactgaaaag 225  Q
    ||||||||||||||||| ||| ||||| |||||| | || ||||||||||| ||||| |  || ||||| ||||||||||||||  || ||| |||| ||    
T  20838823 catccaagaccaaatgagagaaggaaaaacatcatgtgataatccttcatatccacatagtgatatatatccaatgctttttgatcttgctattgaatag 20838724  T
Q  226 ggcacttttgttataccagt 245  Q
    ||||||| | | ||||||||    
T  20838723 ggcacttgtttgataccagt 20838704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 126 - 245
Target Start/End: Complemental strand, 20812468 - 20812349
Alignment:
Q  126 catccaagaccaaatgatagacggaaacacatcacgggagaatccttcatacccacacaaagagatatagccaatgctttttgactttactactgaaaag 225  Q
    ||||||||||||||||| ||| ||||| |||||||| || |||||||| || ||||| |  || |||||  |||||||||||||  || ||| |||| ||    
T  20812468 catccaagaccaaatgagagaaggaaaaacatcacgtgataatccttcgtatccacatagtgatatatatgcaatgctttttgatcttgctattgaatag 20812369  T
Q  226 ggcacttttgttataccagt 245  Q
    ||||||| | | ||||||||    
T  20812368 ggcacttgtttgataccagt 20812349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 127 - 209
Target Start/End: Complemental strand, 15803101 - 15803019
Alignment:
Q  127 atccaagaccaaatgatagacggaaacacatcacgggagaatccttcatacccacacaaagagatatagccaatgctttttga 209  Q
    |||||||||| ||||| ||| ||||| |||||| | || ||||||| ||| ||||| | ||| ||||| ||||||||||||||    
T  15803101 atccaagacctaatgagagaaggaaaaacatcatgtgataatcctttatatccacatagagatatatatccaatgctttttga 15803019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 65; Significance: 1e-28; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 114 - 250
Target Start/End: Original strand, 36213707 - 36213843
Alignment:
Q  114 atttgttggtaccatccaagaccaaatgatagacggaaacacatcacgggagaatccttcatacccacacaaagagatatagccaatgctttttgacttt 213  Q
    ||||||||||  ||||||||||||||||||||| |||||||||||| | |||||||||||||| || |||||||| |||||  | |||||||| ||  ||    
T  36213707 atttgttggtgacatccaagaccaaatgatagatggaaacacatcatgtgagaatccttcatagccgcacaaagatatataagcgatgcttttagatctt 36213806  T
Q  214 actactgaaaagggcacttttgttataccagtgttat 250  Q
    ||||||||||| |||||| |||||||  |||||||||    
T  36213807 actactgaaaatggcactcttgttattgcagtgttat 36213843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 126 - 251
Target Start/End: Complemental strand, 18935577 - 18935452
Alignment:
Q  126 catccaagaccaaatgatagacggaaacacatcacgggagaatccttcatacccacacaaagagatatagccaatgctttttgactttactactgaaaag 225  Q
    ||||||||||  ||| || || |||||||||| ||| |  ||||||||| | |||||||  || ||| | ||||||||||||||  ||||||||| ||||    
T  18935577 catccaagactgaataattgaaggaaacacattacgtgctaatccttcaaatccacacagtgaaataaatccaatgctttttgatcttactactgcaaag 18935478  T
Q  226 ggcacttttgttataccagtgttatc 251  Q
    |||||| |||||| | |||| |||||    
T  18935477 ggcactcttgttacagcagtcttatc 18935452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0294 (Bit Score: 62; Significance: 7e-27; HSPs: 1)
Name: scaffold0294
Description:

Target: scaffold0294; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 111 - 252
Target Start/End: Original strand, 8775 - 8916
Alignment:
Q  111 attatttgttggtaccatccaagaccaaatgatagacggaaacacatcacgggagaatccttcatacccacacaaagagatatagccaatgctttttgac 210  Q
    ||||||||||||   ||||||||||  ||||||||| |||||||||||||| |||||||||||||  || |||||||| |||||  |||| |||||||||    
T  8775 attatttgttggagacatccaagacttaatgatagatggaaacacatcacgtgagaatccttcatggccgcacaaagaaatatatacaatactttttgac 8874  T
Q  211 tttactactgaaaagggcacttttgttataccagtgttatct 252  Q
     |||||| ||||||||||||| ||||||   |||||||||||    
T  8875 cttactattgaaaagggcactcttgttaatgcagtgttatct 8916  T

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Target: chr3 (Bit Score: 46; Significance: 2e-17; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 111 - 176
Target Start/End: Original strand, 47986747 - 47986812
Alignment:
Q  111 attatttgttggtaccatccaagaccaaatgatagacggaaacacatcacgggagaatccttcata 176  Q
    |||||||||||||  ||||||||||||||||||||| |||||||||||||| || |||||||||||    
T  47986747 attatttgttggtgacatccaagaccaaatgatagatggaaacacatcacgtgaaaatccttcata 47986812  T

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Target: chr3; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 111 - 176
Target Start/End: Original strand, 47996034 - 47996099
Alignment:
Q  111 attatttgttggtaccatccaagaccaaatgatagacggaaacacatcacgggagaatccttcata 176  Q
    |||||||||||||  ||||||||||||||||||||| |||||||||||||| || |||||||||||    
T  47996034 attatttgttggtgacatccaagaccaaatgatagatggaaacacatcacgtgaaaatccttcata 47996099  T

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Target: chr3; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 111 - 176
Target Start/End: Original strand, 48005321 - 48005386
Alignment:
Q  111 attatttgttggtaccatccaagaccaaatgatagacggaaacacatcacgggagaatccttcata 176  Q
    |||||||||||||  ||||||||||||||||||||| |||||||||||||| || |||||||||||    
T  48005321 attatttgttggtgacatccaagaccaaatgatagatggaaacacatcacgtgaaaatccttcata 48005386  T

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Target: chr3; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 111 - 176
Target Start/End: Original strand, 48014606 - 48014671
Alignment:
Q  111 attatttgttggtaccatccaagaccaaatgatagacggaaacacatcacgggagaatccttcata 176  Q
    |||||||||||||  ||||||||||||||||||||| |||||||||||||| || |||||||||||    
T  48014606 attatttgttggtgacatccaagaccaaatgatagatggaaacacatcacgtgaaaatccttcata 48014671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 116 - 209
Target Start/End: Original strand, 6905806 - 6905899
Alignment:
Q  116 ttgttggtaccatccaagaccaaatgatagacggaaacacatcacgggagaatccttcatacccacacaaagagatatagccaatgctttttga 209  Q
    ||||||||  ||||||||||||||||| ||| ||||| | |||||| || ||||||||||| || || |  || |||||  |||||||||||||    
T  6905806 ttgttggtgacatccaagaccaaatgagagaaggaaaaatatcacgtgataatccttcatatccgcatagggatatatacacaatgctttttga 6905899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 126 - 230
Target Start/End: Original strand, 3262637 - 3262740
Alignment:
Q  126 catccaagaccaaatgatagacggaaacacatcacgggagaatccttcatacccacacaaagagatatagccaatgctttttgactttactactgaaaag 225  Q
    ||||||||||||||||||||| ||||| |||||||| || ||||| ||||| ||||| |  || ||||| ||||||||||||||  |||||| |||| ||    
T  3262637 catccaagaccaaatgatagagggaaaaacatcacgtgaaaatcc-tcatatccacatagggatatatatccaatgctttttgatcttactattgaatag 3262735  T
Q  226 ggcac 230  Q
    |||||    
T  3262736 ggcac 3262740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 126 - 245
Target Start/End: Complemental strand, 31176038 - 31175919
Alignment:
Q  126 catccaagaccaaatgatagacggaaacacatcacgggagaatccttcatacccacacaaagagatatagccaatgctttttgactttactactgaaaag 225  Q
    ||||||||||||||||| ||| ||||| || ||||  || ||||||||||| ||||| | ||| |||||  |||||||||||||  || ||| |||| ||    
T  31176038 catccaagaccaaatgagagaaggaaaaacgtcacatgataatccttcatatccacatagagatatatatgcaatgctttttgatcttgctattgaatag 31175939  T
Q  226 ggcacttttgttataccagt 245  Q
    ||||||| | | ||||||||    
T  31175938 ggcacttgtttgataccagt 31175919  T

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Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 116 - 182
Target Start/End: Original strand, 3407323 - 3407389
Alignment:
Q  116 ttgttggtaccatccaagaccaaatgatagacggaaacacatcacgggagaatccttcatacccaca 182  Q
    ||||||||  ||||||||||||||||||||| ||||| |||||||| || ||||||| ||| |||||    
T  3407323 ttgttggtgacatccaagaccaaatgatagaaggaaaaacatcacgtgataatccttgatatccaca 3407389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 116 - 209
Target Start/End: Original strand, 3391536 - 3391629
Alignment:
Q  116 ttgttggtaccatccaagaccaaatgatagacggaaacacatcacgggagaatccttcatacccacacaaagagatatagccaatgctttttga 209  Q
    ||||||||  ||||||||||| ||||| ||| ||||| |||| | | || ||||||||||| ||||| | ||| ||||| ||||||||||||||    
T  3391536 ttgttggtgacatccaagacctaatgagagaaggaaaaacatgatgtgataatccttcatatccacatagagatatatatccaatgctttttga 3391629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 126 - 209
Target Start/End: Complemental strand, 3315049 - 3314966
Alignment:
Q  126 catccaagaccaaatgatagacggaaacacatcacgggagaatccttcatacccacacaaagagatatagccaatgctttttga 209  Q
    ||||||||||||||||||||| ||||| |||||||| || || ||||||||  |||| |  || ||||| |||||| |||||||    
T  3315049 catccaagaccaaatgatagaaggaaaaacatcacgtgataaaccttcatattcacatagggatatatatccaatgttttttga 3314966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 127 - 209
Target Start/End: Complemental strand, 3364359 - 3364277
Alignment:
Q  127 atccaagaccaaatgatagacggaaacacatcacgggagaatccttcatacccacacaaagagatatagccaatgctttttga 209  Q
    |||||||||| ||||| ||| ||||| |||| | | || ||||||||||| ||||| | ||| ||||| ||||||||||||||    
T  3364359 atccaagacctaatgagagaaggaaaaacatgatgtgataatccttcatatccacatagagatatatatccaatgctttttga 3364277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 126 - 207
Target Start/End: Original strand, 3325010 - 3325091
Alignment:
Q  126 catccaagaccaaatgatagacggaaacacatcacgggagaatccttcatacccacacaaagagatatagccaatgcttttt 207  Q
    ||||||||||||||||||||| ||||| |||||  | || | ||||||||| ||||| |  || ||||| ||||||||||||    
T  3325010 catccaagaccaaatgatagaaggaaaaacatcgtgtgatagtccttcatatccacagagggatatatatccaatgcttttt 3325091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0286 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0286
Description:

Target: scaffold0286; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 148 - 251
Target Start/End: Complemental strand, 6828 - 6725
Alignment:
Q  148 ggaaacacatcacgggagaatccttcatacccacacaaagagatatagccaatgctttttgactttactactgaaaagggcacttttgttataccagtgt 247  Q
    ||||||||||| || || ||||||||| | ||||| ||||| ||||| |||||| |||| ||   ||||| ||||||||| |||||||||||| |||| |    
T  6828 ggaaacacatcccgtgaaaatccttcaaatccacataaagaaatatatccaatgtttttagatcgtactattgaaaagggaacttttgttatagcagtct 6729  T
Q  248 tatc 251  Q
    ||||    
T  6728 tatc 6725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0813 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0813
Description:

Target: scaffold0813; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 109 - 251
Target Start/End: Original strand, 4699 - 4841
Alignment:
Q  109 acattatttgttggtaccatccaagaccaaatgatagacggaaacacatcacgggagaatccttcatacccacacaaagagatatagccaatgctttttg 208  Q
    |||||| ||| ||||  ||||||||||| || || | | ||||| ||||| || || ||||||||| | ||||| | ||| ||||| |||||| || ||     
T  4699 acattagttgatggtgacatccaagaccgaacgagaaaaggaaatacatctcgtgaaaatccttcaaagccacatagagaaatatatccaatgtttctta 4798  T
Q  209 actttactactgaaaagggcacttttgttataccagtgttatc 251  Q
    |  |||||| |||||| ||||||||||||||| |||| |||||    
T  4799 atcttactattgaaaacggcacttttgttatagcagtcttatc 4841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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