View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10164_low_16 (Length: 250)
Name: NF10164_low_16
Description: NF10164
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10164_low_16 |
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| [»] scaffold0227 (1 HSPs) |
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Alignment Details
Target: scaffold0227 (Bit Score: 236; Significance: 1e-130; HSPs: 1)
Name: scaffold0227
Description:
Target: scaffold0227; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 3703 - 3464
Alignment:
| Q |
1 |
tgtaatgtcattgatagcatcctagaacgcttgaacattcaagagctagttagtaccagtcttctgtctagaaagtggaggtatatgtggaattcagtcc |
100 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3703 |
tgtaatgtcattgatggcatcctagaacgcttgaacattcaagagctagttagtaccagtcttctgtctagaaagtggaggtatatgtggaattcagtcc |
3604 |
T |
|
| Q |
101 |
cacaacttcaattttgtgaggacttcttttgtaggttcgaggatcttaatgaccctggccctgagatttctagaattatcaccgaaattcttttactcca |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3603 |
cacaacttcaattttgtgaggacttcttttgtaggttcgaggatcttaatgaccctggccctgagatttctagaattatcaccgaaattcttttactcca |
3504 |
T |
|
| Q |
201 |
caatgggccgatatatagatttattcttgatatccctttg |
240 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |
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| T |
3503 |
caatgggccgatatatagatttattcttgatatccctttg |
3464 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 59; Significance: 4e-25; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 1 - 237
Target Start/End: Original strand, 10862305 - 10862551
Alignment:
| Q |
1 |
tgtaatgtcattgatagcatcctagaacgcttgaacattcaagagctagtta----gtaccagtcttctgtctagaaagtggaggtatatgtggaattca |
96 |
Q |
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||||||||||||||| |||||||| ||| ||||| ||| ||||||||||||| |||||||| ||||||| ||||| ||||| |||||||||| |||| |
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| T |
10862305 |
tgtaatgtcattgatggcatcctaaaacacttgagcatccaagagctagttaattagtaccagtattctgtcaagaaaatggagctatatgtggacttca |
10862404 |
T |
|
| Q |
97 |
gt------cccacaacttcaattttgtgaggacttcttttgtaggttcgaggatcttaatgaccctggccctgagatttctagaattatcaccgaaattc |
190 |
Q |
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| T |
10862405 |
gtttgatacgaacaccttttattcgacaaggacttttttagaaggtttgaggatcatgatggccctggcccttagatttctagaattatcactgaagttc |
10862504 |
T |
|
| Q |
191 |
ttttactccacaatgggccgatatatagatttattcttgatatccct |
237 |
Q |
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|||| || |||||||||||||||||| | ||| |||||| |||||| |
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| T |
10862505 |
ttttccttcacaatgggccgatatatggttttgctcttgacatccct |
10862551 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 2 - 217
Target Start/End: Complemental strand, 40011252 - 40011043
Alignment:
| Q |
2 |
gtaatgtcattgatagcatcctagaacgcttgaacattcaagagctagttagtaccagtcttctgtctagaaagtggaggtatatgtggaattcagtccc |
101 |
Q |
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|||||||||| ||| |||||||||||| ||||||| | ||| ||||| || || ||| |||||||||||||||||||||||||||||| | ||||||| |
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| T |
40011252 |
gtaatgtcatcgatggcatcctagaacacttgaacgcccgagacctagtgaggactagtgttctgtctagaaagtggaggtatatgtggattacagtccc |
40011153 |
T |
|
| Q |
102 |
acaacttcaattttgtgaggacttcttttgtaggttcgaggatcttaatgaccctggccctgagatttctagaattatcaccgaaattcttttactccac |
201 |
Q |
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|| |||| | |||||| | || || ||||| | || | |||||||| | | |||| ||| |||| ||||||||||| ||| ||||||| |||||| |
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| T |
40011152 |
acgacttgagttttgtcaagattttttttgcaagtacaaggatcttgaag-ccct-----tgatgtttcaagaattatcacggaagttcttttcctccac |
40011059 |
T |
|
| Q |
202 |
aatgggccgatatata |
217 |
Q |
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||||| |||||||||| |
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| T |
40011058 |
aatggaccgatatata |
40011043 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 37; Significance: 0.000000000006; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 2 - 102
Target Start/End: Original strand, 16865368 - 16865468
Alignment:
| Q |
2 |
gtaatgtcattgatagcatcctagaacgcttgaacattcaagagctagttagtaccagtcttctgtctagaaagtggaggtatatgtggaattcagtccc |
101 |
Q |
| |
|
|||||||||||||| |||| ||| ||| | ||||||| | ||| |||| ||| |||||| |||| ||||||||||||||| |||| |||| |||| |||| |
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| T |
16865368 |
gtaatgtcattgatggcattctacaacacctgaacatccgagacctagctaggaccagtattctatctagaaagtggagggatatatggatttcattccc |
16865467 |
T |
|
| Q |
102 |
a |
102 |
Q |
| |
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| |
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|
| T |
16865468 |
a |
16865468 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 140 - 213
Target Start/End: Original strand, 16865512 - 16865585
Alignment:
| Q |
140 |
aggatcttaatgaccctggccctgagatttctagaattatcaccgaaattcttttactccacaatgggccgata |
213 |
Q |
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||||| |||| |||| | |||||||| ||| || ||||||||| ||| ||||||| |||||||||||||||||| |
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| T |
16865512 |
aggattttaaggaccatagccctgaggtttgtataattatcacggaagttcttttgctccacaatgggccgata |
16865585 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 108
Target Start/End: Complemental strand, 35749323 - 35749216
Alignment:
| Q |
1 |
tgtaatgtcattgatagcatcctagaacgcttgaacattcaagagctagttagtaccagtcttctgtctagaaagtggaggtatatgtggaattcagtcc |
100 |
Q |
| |
|
|||||||| |||||| ||||||| ||||||| |||| |||| |||||||| || ||| || |||| | ||| |||||||||||||| | ||||| || |
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| T |
35749323 |
tgtaatgttattgatgatatcctagcacgcttgtacatcaaagacctagttaggactagtattttgtcaaaaaattggaggtatatgtgaacttcagccc |
35749224 |
T |
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| Q |
101 |
cacaactt |
108 |
Q |
| |
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|||||||| |
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| T |
35749223 |
cacaactt |
35749216 |
T |
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