View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10164_low_18 (Length: 242)

Name: NF10164_low_18
Description: NF10164
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10164_low_18
NF10164_low_18
[»] chr5 (21 HSPs)
chr5 (1-209)||(7183137-7183345)
chr5 (1-210)||(15912989-15913198)
chr5 (1-204)||(39056310-39056513)
chr5 (1-154)||(33868834-33868987)
chr5 (99-204)||(6054370-6054475)
chr5 (77-153)||(7183331-7183407)
chr5 (77-153)||(33868973-33869049)
chr5 (77-153)||(39056248-39056324)
chr5 (152-204)||(33868160-33868212)
chr5 (152-204)||(4674965-4675017)
chr5 (152-204)||(16552648-16552700)
chr5 (152-204)||(16668803-16668855)
chr5 (94-153)||(15912944-15913003)
chr5 (152-204)||(3884044-3884096)
chr5 (152-204)||(18465565-18465617)
chr5 (79-116)||(30407683-30407720)
chr5 (79-116)||(30407884-30407921)
chr5 (79-116)||(30408086-30408123)
chr5 (79-116)||(30408691-30408728)
chr5 (79-116)||(30408891-30408928)
chr5 (159-204)||(30783440-30783485)
[»] chr4 (33 HSPs)
chr4 (1-211)||(2847968-2848177)
chr4 (1-209)||(34986243-34986450)
chr4 (1-175)||(20588102-20588276)
chr4 (12-157)||(9561133-9561278)
chr4 (37-153)||(9561020-9561136)
chr4 (76-157)||(9561582-9561663)
chr4 (76-153)||(55780302-55780379)
chr4 (76-153)||(55844482-55844559)
chr4 (77-153)||(2847906-2847982)
chr4 (77-153)||(20588040-20588116)
chr4 (84-157)||(810233-810306)
chr4 (152-204)||(24686577-24686629)
chr4 (152-204)||(25574137-25574189)
chr4 (152-204)||(16298926-16298978)
chr4 (79-116)||(808744-808781)
chr4 (79-116)||(809115-809152)
chr4 (79-116)||(809486-809523)
chr4 (79-116)||(809656-809693)
chr4 (79-116)||(810027-810064)
chr4 (79-116)||(54754358-54754395)
chr4 (152-204)||(38010146-38010198)
chr4 (152-204)||(55765486-55765538)
chr4 (79-121)||(808945-808987)
chr4 (79-121)||(54757723-54757765)
chr4 (77-118)||(9560960-9561001)
chr4 (159-204)||(13635741-13635786)
chr4 (152-193)||(30357823-30357864)
chr4 (159-204)||(49492528-49492573)
chr4 (79-116)||(54756723-54756760)
chr4 (79-116)||(54756924-54756961)
chr4 (79-116)||(54757527-54757564)
chr4 (79-115)||(809316-809352)
chr4 (160-204)||(10472502-10472546)
[»] chr2 (26 HSPs)
chr2 (1-209)||(24024482-24024690)
chr2 (1-107)||(28056102-28056208)
chr2 (76-157)||(28048244-28048325)
chr2 (41-133)||(30771316-30771409)
chr2 (69-153)||(30771407-30771491)
chr2 (152-204)||(5098721-5098773)
chr2 (79-153)||(28056194-28056268)
chr2 (152-204)||(39548047-39548099)
chr2 (152-204)||(13081869-13081921)
chr2 (152-204)||(40853688-40853740)
chr2 (79-121)||(21173668-21173710)
chr2 (79-121)||(27970565-27970607)
chr2 (79-116)||(44348258-44348295)
chr2 (79-116)||(44350782-44350819)
chr2 (152-204)||(25995291-25995343)
chr2 (152-204)||(36636946-36636998)
chr2 (79-121)||(27970194-27970236)
chr2 (79-121)||(28056699-28056741)
chr2 (152-201)||(16142084-16142133)
chr2 (79-116)||(21173498-21173535)
chr2 (84-121)||(27970364-27970401)
chr2 (84-121)||(28056869-28056906)
chr2 (84-121)||(30767577-30767614)
chr2 (84-121)||(30771740-30771777)
chr2 (152-204)||(4281797-4281849)
chr2 (84-116)||(44348464-44348496)
[»] scaffold0069 (2 HSPs)
scaffold0069 (1-201)||(51367-51567)
scaffold0069 (77-153)||(51553-51629)
[»] chr7 (28 HSPs)
chr7 (1-204)||(6797243-6797446)
chr7 (1-204)||(45402728-45402931)
chr7 (13-169)||(21405900-21406055)
chr7 (41-157)||(12283282-12283398)
chr7 (41-157)||(10564153-10564269)
chr7 (41-153)||(12283395-12283507)
chr7 (41-153)||(12283504-12283616)
chr7 (74-157)||(12283079-12283162)
chr7 (77-153)||(45402666-45402742)
chr7 (63-154)||(10564457-10564548)
chr7 (76-154)||(10563830-10563908)
chr7 (63-153)||(10564266-10564356)
chr7 (152-202)||(39007658-39007708)
chr7 (77-153)||(6797182-6797257)
chr7 (152-204)||(34875494-34875546)
chr7 (152-204)||(44141260-44141312)
chr7 (63-114)||(10564592-10564643)
chr7 (77-154)||(10564648-10564725)
chr7 (152-204)||(5757391-5757443)
chr7 (63-114)||(10564401-10564452)
chr7 (79-116)||(4721019-4721056)
chr7 (152-204)||(46346725-46346777)
chr7 (79-121)||(13420428-13420470)
chr7 (79-121)||(13420629-13420671)
chr7 (159-204)||(16933260-16933305)
chr7 (159-204)||(16938643-16938688)
chr7 (152-209)||(24359871-24359928)
chr7 (151-183)||(48305261-48305293)
[»] scaffold0460 (2 HSPs)
scaffold0460 (1-201)||(1612-1812)
scaffold0460 (77-153)||(1798-1874)
[»] scaffold0006 (3 HSPs)
scaffold0006 (1-204)||(209331-209534)
scaffold0006 (89-201)||(171513-171625)
scaffold0006 (77-153)||(209520-209596)
[»] scaffold0012 (2 HSPs)
scaffold0012 (1-204)||(119207-119410)
scaffold0012 (77-153)||(119396-119472)
[»] chr3 (28 HSPs)
chr3 (1-204)||(32232996-32233199)
chr3 (1-210)||(41568830-41569037)
chr3 (77-153)||(32233185-32233261)
chr3 (76-157)||(40219300-40219381)
chr3 (76-157)||(40219501-40219582)
chr3 (76-157)||(40219702-40219783)
chr3 (76-157)||(40219903-40219984)
chr3 (1-50)||(51452934-51452983)
chr3 (157-204)||(51682016-51682063)
chr3 (152-204)||(23755290-23755342)
chr3 (152-204)||(47728393-47728445)
chr3 (157-204)||(37319474-37319521)
chr3 (155-204)||(39195120-39195169)
chr3 (152-204)||(53594973-53595025)
chr3 (79-121)||(11974935-11974977)
chr3 (152-201)||(28299961-28300010)
chr3 (152-204)||(9106272-9106324)
chr3 (152-204)||(23699332-23699384)
chr3 (152-204)||(23717787-23717839)
chr3 (152-204)||(23736243-23736295)
chr3 (152-211)||(41192359-41192418)
chr3 (79-121)||(11975105-11975147)
chr3 (79-121)||(11975275-11975317)
chr3 (79-121)||(11975445-11975487)
chr3 (159-204)||(26662554-26662599)
chr3 (159-204)||(30947927-30947972)
chr3 (159-204)||(33414029-33414074)
chr3 (152-209)||(51846789-51846846)
[»] chr1 (30 HSPs)
chr1 (1-204)||(13590472-13590675)
chr1 (1-201)||(20372213-20372405)
chr1 (46-204)||(5077351-5077509)
chr1 (89-201)||(13673899-13674011)
chr1 (1-88)||(20481214-20481301)
chr1 (76-157)||(19845812-19845893)
chr1 (77-153)||(13590661-13590737)
chr1 (77-153)||(20372391-20372467)
chr1 (77-153)||(20481287-20481363)
chr1 (152-204)||(33097410-33097462)
chr1 (152-204)||(51801742-51801794)
chr1 (152-204)||(37639346-37639398)
chr1 (152-204)||(44260523-44260575)
chr1 (157-204)||(35198195-35198242)
chr1 (152-204)||(31529674-31529726)
chr1 (152-204)||(44688619-44688671)
chr1 (79-138)||(19846071-19846130)
chr1 (79-116)||(37223273-37223310)
chr1 (79-116)||(37223613-37223650)
chr1 (79-116)||(37223783-37223820)
chr1 (79-116)||(37223953-37223990)
chr1 (160-204)||(51420350-51420394)
chr1 (158-213)||(28323347-28323402)
chr1 (160-213)||(2741032-2741085)
chr1 (79-112)||(37223447-37223480)
chr1 (79-116)||(37224123-37224160)
chr1 (159-204)||(49936953-49936998)
chr1 (159-204)||(50351808-50351853)
chr1 (152-204)||(11421599-11421651)
chr1 (164-204)||(30788353-30788393)
[»] scaffold0717 (2 HSPs)
scaffold0717 (1-211)||(7200-7410)
scaffold0717 (77-153)||(7138-7214)
[»] scaffold0002 (2 HSPs)
scaffold0002 (1-204)||(450207-450409)
scaffold0002 (77-153)||(450395-450471)
[»] chr8 (27 HSPs)
chr8 (44-209)||(44508953-44509118)
chr8 (76-157)||(17225380-17225461)
chr8 (76-157)||(40005568-40005649)
chr8 (76-157)||(40005769-40005850)
chr8 (152-204)||(2522872-2522924)
chr8 (152-204)||(40247294-40247346)
chr8 (82-157)||(40005970-40006045)
chr8 (157-204)||(10443584-10443631)
chr8 (152-204)||(12355427-12355479)
chr8 (79-121)||(17057590-17057632)
chr8 (79-121)||(17225658-17225700)
chr8 (79-121)||(17590593-17590635)
chr8 (82-132)||(40006167-40006217)
chr8 (152-209)||(9852270-9852327)
chr8 (152-213)||(13526680-13526741)
chr8 (152-213)||(13616215-13616276)
chr8 (152-209)||(34648137-34648194)
chr8 (152-195)||(23396491-23396534)
chr8 (82-116)||(40006097-40006131)
chr8 (82-132)||(40006124-40006174)
chr8 (79-116)||(17057388-17057425)
chr8 (79-116)||(17590800-17590837)
chr8 (159-204)||(30413919-30413964)
chr8 (152-204)||(15181795-15181847)
chr8 (152-204)||(15227035-15227087)
chr8 (165-213)||(28698603-28698651)
chr8 (152-200)||(30651958-30652006)
[»] chr6 (21 HSPs)
chr6 (1-183)||(7851365-7851544)
chr6 (12-204)||(32556349-32556542)
chr6 (1-157)||(18762702-18762858)
chr6 (41-153)||(18762604-18762716)
chr6 (41-153)||(18762495-18762607)
chr6 (132-209)||(27079919-27079996)
chr6 (82-153)||(32556540-32556611)
chr6 (76-148)||(28123070-28123142)
chr6 (80-153)||(7851530-7851603)
chr6 (83-157)||(28122930-28123004)
chr6 (157-202)||(16968037-16968082)
chr6 (79-116)||(22038107-22038144)
chr6 (152-209)||(30908652-30908709)
chr6 (152-204)||(18611193-18611245)
chr6 (157-204)||(4338634-4338681)
chr6 (79-138)||(28123519-28123578)
chr6 (79-121)||(15034036-15034078)
chr6 (79-116)||(28123342-28123379)
chr6 (159-204)||(31216667-31216712)
chr6 (77-153)||(18762422-18762498)
chr6 (84-116)||(22038313-22038345)
[»] scaffold0065 (6 HSPs)
scaffold0065 (11-157)||(409-555)
scaffold0065 (1-145)||(559-695)
scaffold0065 (76-157)||(21-102)
scaffold0065 (41-153)||(681-793)
scaffold0065 (77-153)||(790-865)
scaffold0065 (89-147)||(162-220)
[»] scaffold0019 (3 HSPs)
scaffold0019 (44-157)||(168514-168627)
scaffold0019 (76-157)||(168320-168401)
scaffold0019 (79-141)||(168665-168727)
[»] scaffold0104 (5 HSPs)
scaffold0104 (41-157)||(39209-39325)
scaffold0104 (76-157)||(39473-39554)
scaffold0104 (76-157)||(39850-39931)
scaffold0104 (79-148)||(39112-39181)
scaffold0104 (79-153)||(38883-38957)
[»] scaffold0050 (7 HSPs)
scaffold0050 (41-157)||(16194-16310)
scaffold0050 (48-152)||(22770-22874)
scaffold0050 (62-138)||(16106-16182)
scaffold0050 (58-154)||(22584-22680)
scaffold0050 (58-154)||(22680-22780)
scaffold0050 (59-113)||(22877-22931)
scaffold0050 (76-154)||(16511-16589)
[»] scaffold0558 (4 HSPs)
scaffold0558 (41-157)||(10636-10752)
scaffold0558 (76-157)||(10432-10513)
scaffold0558 (76-157)||(10055-10136)
scaffold0558 (79-148)||(10762-10831)
[»] scaffold0553 (1 HSPs)
scaffold0553 (76-157)||(6371-6450)
[»] scaffold0455 (3 HSPs)
scaffold0455 (76-148)||(1156-1228)
scaffold0455 (83-157)||(1016-1090)
scaffold0455 (79-138)||(1804-1863)
[»] scaffold0534 (2 HSPs)
scaffold0534 (79-121)||(5931-5973)
scaffold0534 (79-121)||(8864-8906)
[»] scaffold0023 (3 HSPs)
scaffold0023 (79-121)||(126256-126298)
scaffold0023 (79-121)||(126426-126468)
scaffold0023 (79-116)||(128579-128616)
[»] scaffold0144 (12 HSPs)
scaffold0144 (79-116)||(19721-19758)
scaffold0144 (79-116)||(28835-28872)
scaffold0144 (79-116)||(30981-31018)
scaffold0144 (79-116)||(33393-33430)
scaffold0144 (79-116)||(33903-33940)
scaffold0144 (79-116)||(34073-34110)
scaffold0144 (79-112)||(19385-19418)
scaffold0144 (79-116)||(19551-19588)
scaffold0144 (79-116)||(28665-28702)
scaffold0144 (79-116)||(33563-33600)
scaffold0144 (79-116)||(34243-34280)
scaffold0144 (79-112)||(34583-34616)
[»] scaffold0581 (1 HSPs)
scaffold0581 (79-116)||(310-347)


Alignment Details
Target: chr5 (Bit Score: 177; Significance: 2e-95; HSPs: 21)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 1 - 209
Target Start/End: Complemental strand, 7183345 - 7183137
Alignment:
Q  1 ttgtgtaatagtttttaatgaaattattattgttacatgattttaaataatgattaagatgttatacattgaaattattactgaaaccataattatggtt 100  Q
    ||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  7183345 ttgtgtaatggtttttaatgaaattattattgttacatggttttaaataatgattaagatgttatacactgaaattattactgaaaccataattatggtt 7183246  T
Q  101 taatggttttgatagtcttctgtgagaaaccaaaataattgtctaatgattttgtaaagtgtttatgcagggtgcataaggaactgacttatgcataata 200  Q
    ||||| ||||||||||||||| |||||||||||||||||||||||||| |||||| |||||||||||||| |||||||||||||||||||||||||||||    
T  7183245 taatgattttgatagtcttctatgagaaaccaaaataattgtctaatggttttgtgaagtgtttatgcagtgtgcataaggaactgacttatgcataata 7183146  T
Q  201 acttctccc 209  Q
    |||||||||    
T  7183145 acttctccc 7183137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 1 - 210
Target Start/End: Original strand, 15912989 - 15913198
Alignment:
Q  1 ttgtgtaatagtttttaatgaaattattattgttacatgattttaaataatgattaagatgttatacattgaaattattactgaaaccataattatggtt 100  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||    
T  15912989 ttgtgtaatggtttttaatgaaattattattgttacatgattttaaataatgattaagatgttatacactaaaattattactgaaaccataattatggtt 15913088  T
Q  101 taatggttttgatagtcttctgtgagaaaccaaaataattgtctaatgattttgtaaagtgtttatgcagggtgcataaggaactgacttatgcataata 200  Q
    ||||| ||||||||||||||| |||||||||||||||||||| | ||| |||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  15913089 taatgattttgatagtcttctatgagaaaccaaaataattgtatgatggttttgtaaagtgtttatgcaggatgcataaggaactgacttatgcataata 15913188  T
Q  201 acttctcccc 210  Q
    ||||||||||    
T  15913189 acttctcccc 15913198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 1 - 204
Target Start/End: Original strand, 39056310 - 39056513
Alignment:
Q  1 ttgtgtaatagtttttaatgaaattattattgttacatgattttaaataatgattaagatgttatacattgaaattattactgaaaccataattatggtt 100  Q
    ||||||||| |||||||||||||| |||||||| ||||| |||||||||| |||||||||| |||||| |||||||||||||||||||||||||||||||    
T  39056310 ttgtgtaatggtttttaatgaaatgattattgtgacatggttttaaataacgattaagatggtatacactgaaattattactgaaaccataattatggtt 39056409  T
Q  101 taatggttttgatagtcttctgtgagaaaccaaaataattgtctaatgattttgtaaagtgtttatgcagggtgcataaggaactgacttatgcataata 200  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||| |||||| ||||||||| |||||||||||||| || ||| ||||||||||||    
T  39056410 taatggttttgatagtcttctatgagaaaccaaaataattgtctaatggttttgtgaagtgtttaagcagggtgcataagaaaatgatttatgcataata 39056509  T
Q  201 actt 204  Q
    ||||    
T  39056510 actt 39056513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 1 - 154
Target Start/End: Complemental strand, 33868987 - 33868834
Alignment:
Q  1 ttgtgtaatagtttttaatgaaattattattgttacatgattttaaataatgattaagatgttatacattgaaattattactgaaaccataattatggtt 100  Q
    |||||||||  |||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  33868987 ttgtgtaatgatttttaatgaaattattattgttacatggttttaaataatgattaagatgttatacactgaaattattactgaaaccataattatggtt 33868888  T
Q  101 taatggttttgatagtcttctgtgagaaaccaaaataattgtctaatgattttg 154  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  33868887 taatggttttgatagtcttctatgagaaaccaaaataattgtctaatgattttg 33868834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 99 - 204
Target Start/End: Complemental strand, 6054475 - 6054370
Alignment:
Q  99 tttaatggttttgatagtcttctgtgagaaaccaaaataattgtctaatgattttgtaaagtgtttatgcagggtgcataaggaactgacttatgcataa 198  Q
    ||||||||||||||| ||||||| ||||||||||||||||||||||||| ||||||| || || ||||  ||| |||||| | || ||||||||||||||    
T  6054475 tttaatggttttgattgtcttctatgagaaaccaaaataattgtctaataattttgtgaaatgcttatataggatgcataggaaaatgacttatgcataa 6054376  T
Q  199 taactt 204  Q
    | ||||    
T  6054375 tgactt 6054370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 77 - 153
Target Start/End: Complemental strand, 7183407 - 7183331
Alignment:
Q  77 attactgaaaccataattatggtttaatggttttgatagtcttctgtgagaaaccaaaataattgtctaatgatttt 153  Q
    |||||||||||||||| |||||||||||||||||||||||||| | || |||||||| |||||||| ||||| ||||    
T  7183407 attactgaaaccataagtatggtttaatggttttgatagtcttgtatgtgaaaccaagataattgtgtaatggtttt 7183331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 77 - 153
Target Start/End: Complemental strand, 33869049 - 33868973
Alignment:
Q  77 attactgaaaccataattatggtttaatggttttgatagtcttctgtgagaaaccaaaataattgtctaatgatttt 153  Q
    ||||||||||||| || |||||||||||||||||||||||||| | || |||||||| |||||||| ||||||||||    
T  33869049 attactgaaaccaaaagtatggtttaatggttttgatagtcttgtatgtgaaaccaagataattgtgtaatgatttt 33868973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 77 - 153
Target Start/End: Original strand, 39056248 - 39056324
Alignment:
Q  77 attactgaaaccataattatggtttaatggttttgatagtcttctgtgagaaaccaaaataattgtctaatgatttt 153  Q
    |||||||||||||||| |||||||||||||||||||||||||| | || |||||||| |||||||| ||||| ||||    
T  39056248 attactgaaaccataagtatggtttaatggttttgatagtcttgtatgtgaaaccaagataattgtgtaatggtttt 39056324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 152 - 204
Target Start/End: Complemental strand, 33868212 - 33868160
Alignment:
Q  152 ttgtaaagtgtttatgcagggtgcataaggaactgacttatgcataataactt 204  Q
    |||| ||||||||||||||||||||||||||| ||||||||||||||||||||    
T  33868212 ttgtgaagtgtttatgcagggtgcataaggaaatgacttatgcataataactt 33868160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 152 - 204
Target Start/End: Complemental strand, 4675017 - 4674965
Alignment:
Q  152 ttgtaaagtgtttatgcagggtgcataaggaactgacttatgcataataactt 204  Q
    |||| ||||||||||||||||||||||||||| ||||||| ||||||||||||    
T  4675017 ttgtgaagtgtttatgcagggtgcataaggaaatgacttacgcataataactt 4674965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 152 - 204
Target Start/End: Original strand, 16552648 - 16552700
Alignment:
Q  152 ttgtaaagtgtttatgcagggtgcataaggaactgacttatgcataataactt 204  Q
    |||| ||||||||||||| ||||||||||||| ||||||||||||||||||||    
T  16552648 ttgtgaagtgtttatgcatggtgcataaggaaatgacttatgcataataactt 16552700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 152 - 204
Target Start/End: Original strand, 16668803 - 16668855
Alignment:
Q  152 ttgtaaagtgtttatgcagggtgcataaggaactgacttatgcataataactt 204  Q
    |||| ||||||||||||||||||||||||||| || |||||||||||||||||    
T  16668803 ttgtgaagtgtttatgcagggtgcataaggaaatgtcttatgcataataactt 16668855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 94 - 153
Target Start/End: Original strand, 15912944 - 15913003
Alignment:
Q  94 tatggtttaatggttttgatagtcttctgtgagaaaccaaaataattgtctaatgatttt 153  Q
    |||||||||||||||||||||||||| | || |||||||| |||||||| ||||| ||||    
T  15912944 tatggtttaatggttttgatagtcttgtatgtgaaaccaatataattgtgtaatggtttt 15913003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 152 - 204
Target Start/End: Original strand, 3884044 - 3884096
Alignment:
Q  152 ttgtaaagtgtttatgcagggtgcataaggaactgacttatgcataataactt 204  Q
    |||||| ||||||||||| ||||||||||||| |||||||||||  |||||||    
T  3884044 ttgtaatgtgtttatgcacggtgcataaggaaatgacttatgcaccataactt 3884096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 152 - 204
Target Start/End: Original strand, 18465565 - 18465617
Alignment:
Q  152 ttgtaaagtgtttatgcagggtgcataaggaactgacttatgcataataactt 204  Q
    |||| ||||||||||||||| ||||||| ||| || |||||||||||||||||    
T  18465565 ttgtgaagtgtttatgcaggatgcataatgaaatgtcttatgcataataactt 18465617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 79 - 116
Target Start/End: Original strand, 30407683 - 30407720
Alignment:
Q  79 tactgaaaccataattatggtttaatggttttgatagt 116  Q
    |||||||||||||| |||||| ||||||||||||||||    
T  30407683 tactgaaaccataagtatggtataatggttttgatagt 30407720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 79 - 116
Target Start/End: Original strand, 30407884 - 30407921
Alignment:
Q  79 tactgaaaccataattatggtttaatggttttgatagt 116  Q
    |||||||||||||| |||||| ||||||||||||||||    
T  30407884 tactgaaaccataagtatggtataatggttttgatagt 30407921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 79 - 116
Target Start/End: Original strand, 30408086 - 30408123
Alignment:
Q  79 tactgaaaccataattatggtttaatggttttgatagt 116  Q
    |||||||||||||| |||||| ||||||||||||||||    
T  30408086 tactgaaaccataagtatggtataatggttttgatagt 30408123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 79 - 116
Target Start/End: Original strand, 30408691 - 30408728
Alignment:
Q  79 tactgaaaccataattatggtttaatggttttgatagt 116  Q
    |||||||||||||| |||||| ||||||||||||||||    
T  30408691 tactgaaaccataagtatggtataatggttttgatagt 30408728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 79 - 116
Target Start/End: Original strand, 30408891 - 30408928
Alignment:
Q  79 tactgaaaccataattatggtttaatggttttgatagt 116  Q
    |||||||||||||| |||||| ||||||||||||||||    
T  30408891 tactgaaaccataagtatggtataatggttttgatagt 30408928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 159 - 204
Target Start/End: Complemental strand, 30783485 - 30783440
Alignment:
Q  159 gtgtttatgcagggtgcataaggaactgacttatgcataataactt 204  Q
    ||||||||||| ||||||||||||| |||||||||||  |||||||    
T  30783485 gtgtttatgcacggtgcataaggaaatgacttatgcaccataactt 30783440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 171; Significance: 6e-92; HSPs: 33)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 1 - 211
Target Start/End: Original strand, 2847968 - 2848177
Alignment:
Q  1 ttgtgtaatagtttttaatgaaattattattgttacatgattttaaataatgattaagatgttatacattgaaattattactgaaaccataattatggtt 100  Q
    |||||||||  |||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||    
T  2847968 ttgtgtaatgatttttaatgaaattattattgttacatggttttaaataatgattaagatgttatacactgaaattattactgaaaccataattatg-tt 2848066  T
Q  101 taatggttttgatagtcttctgtgagaaaccaaaataattgtctaatgattttgtaaagtgtttatgcagggtgcataaggaactgacttatgcataata 200  Q
    ||||||||||||||||||||| |||||||| ||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  2848067 taatggttttgatagtcttctatgagaaactaaaataattgtctaatggttttgtaaagtatttatgcagggtgcataaggaactgacttatgcataata 2848166  T
Q  201 acttctcccca 211  Q
    |||||||||||    
T  2848167 acttctcccca 2848177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 1 - 209
Target Start/End: Complemental strand, 34986450 - 34986243
Alignment:
Q  1 ttgtgtaatagtttttaatgaaattattattgttacatgattttaaataatgattaagatgttatacattgaaattattactgaaaccataattatggtt 100  Q
    ||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  34986450 ttgtgtaatggtttttaatgaaattattattgttacatggttttaaataatgattaagatgttatacactgaaattattactgaaaccataattatggtt 34986351  T
Q  101 taatggttttgatagtcttctgtgagaaaccaaaataattgtctaatgattttgtaaagtgtttatgcagggtgcataaggaactgacttatgcataata 200  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||| |||||| ||||||||||| ||||||||||| | ||||||||||||||||||    
T  34986350 taatggttttgatagtcttctatgagaaaccaaaataattgtctaatggttttgtgaagtgtttatgtagggtgcataatg-actgacttatgcataata 34986252  T
Q  201 acttctccc 209  Q
     ||||||||    
T  34986251 tcttctccc 34986243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 1 - 175
Target Start/End: Original strand, 20588102 - 20588276
Alignment:
Q  1 ttgtgtaatagtttttaatgaaattattattgttacatgattttaaataatgattaagatgttatacattgaaattattactgaaaccataattatggtt 100  Q
    |||||||||  |||||||| ||||||||||||||||||| |||||||||||||||||||||||||||| ||||| ||||| |||||||||||||||| ||    
T  20588102 ttgtgtaatgatttttaataaaattattattgttacatggttttaaataatgattaagatgttatacactgaaactattagtgaaaccataattatgatt 20588201  T
Q  101 taatggttttgatagtcttctgtgagaaaccaaaataattgtctaatgattttgtaaagtgtttatgcagggtgc 175  Q
    ||||||||||||||||||||| |||||||||||||||||| || |||  |||||| |||||||||| ||||||||    
T  20588202 taatggttttgatagtcttctatgagaaaccaaaataattatcaaatagttttgtgaagtgtttatacagggtgc 20588276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 12 - 157
Target Start/End: Original strand, 9561133 - 9561278
Alignment:
Q  12 tttttaatgaaattattattgttacatgattttaaataatgattaagatgttatacattgaaattattactgaaaccataattatggtttaatggttttg 111  Q
    |||| |||||||||||||||| |||||||||||||||||||||||| |||||||||| | ||||||||||||||||||||| |||| |||||||||||||    
T  9561133 ttttaaatgaaattattattggtacatgattttaaataatgattaacatgttatacactaaaattattactgaaaccataagtatgatttaatggttttg 9561232  T
Q  112 atagtcttctgtgagaaaccaaaataattgtctaatgattttgtaa 157  Q
    ||| |||||  || ||||||||||||||||||||||| ||||||||    
T  9561233 ataatcttcaatgtgaaaccaaaataattgtctaatggttttgtaa 9561278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 37 - 153
Target Start/End: Original strand, 9561020 - 9561136
Alignment:
Q  37 atgattttaaataatgattaagatgttatacattgaaattattactgaaaccataattatggtttaatggttttgatagtcttctgtgagaaaccaaaat 136  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||| |||||||| |||| | |  |||||||||||    
T  9561020 atgattttaaataatgattaagatgttatacactgaaattattactgaaaccataagtatggtttaatgattttgatattcttgtatatgaaaccaaaat 9561119  T
Q  137 aattgtctaatgatttt 153  Q
    |||||||||||| ||||    
T  9561120 aattgtctaatgttttt 9561136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 76 - 157
Target Start/End: Original strand, 9561582 - 9561663
Alignment:
Q  76 tattactgaaaccataattatggtttaatggttttgatagtcttctgtgagaaaccaaaataattgtctaatgattttgtaa 157  Q
    ||||||||||||||||| ||||||||||||||||||||||| |||| || |||| |||||||||||||||||  ||||||||    
T  9561582 tattactgaaaccataagtatggtttaatggttttgatagtgttctatgtgaaatcaaaataattgtctaatagttttgtaa 9561663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 76 - 153
Target Start/End: Complemental strand, 55780379 - 55780302
Alignment:
Q  76 tattactgaaaccataattatggtttaatggttttgatagtcttctgtgagaaaccaaaataattgtctaatgatttt 153  Q
    ||||||||||||||||| ||||||||||||||||||||||| |||| || ||||||||| ||||||||||||| ||||    
T  55780379 tattactgaaaccataagtatggtttaatggttttgatagtattctatgtgaaaccaaactaattgtctaatggtttt 55780302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 76 - 153
Target Start/End: Complemental strand, 55844559 - 55844482
Alignment:
Q  76 tattactgaaaccataattatggtttaatggttttgatagtcttctgtgagaaaccaaaataattgtctaatgatttt 153  Q
    ||||||||||||||||| ||||||||||||||||||||||| |||| || ||||||||| ||||||||||||| ||||    
T  55844559 tattactgaaaccataagtatggtttaatggttttgatagtattctatgtgaaaccaaactaattgtctaatggtttt 55844482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 77 - 153
Target Start/End: Original strand, 2847906 - 2847982
Alignment:
Q  77 attactgaaaccataattatggtttaatggttttgatagtcttctgtgagaaaccaaaataattgtctaatgatttt 153  Q
    |||||||||||||||| |||||||||||||||||||||||||| | || |||||||| |||||||| ||||||||||    
T  2847906 attactgaaaccataagtatggtttaatggttttgatagtcttgtatgtgaaaccaagataattgtgtaatgatttt 2847982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 77 - 153
Target Start/End: Original strand, 20588040 - 20588116
Alignment:
Q  77 attactgaaaccataattatggtttaatggttttgatagtcttctgtgagaaaccaaaataattgtctaatgatttt 153  Q
    |||||||||||||||| |||||||||||||||||||||||||| | || |||||||| |||||||| ||||||||||    
T  20588040 attactgaaaccataagtatggtttaatggttttgatagtcttgtatgtgaaaccaagataattgtgtaatgatttt 20588116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 84 - 157
Target Start/End: Original strand, 810233 - 810306
Alignment:
Q  84 aaaccataattatggtttaatggttttgatagtcttctgtgagaaaccaaaataattgtctaatgattttgtaa 157  Q
    ||||||||| ||||||||||||||||||||||| | || || ||||||||| ||||||||||||| ||||||||    
T  810233 aaaccataagtatggtttaatggttttgatagtgtcctatgtgaaaccaaactaattgtctaatggttttgtaa 810306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 152 - 204
Target Start/End: Complemental strand, 24686629 - 24686577
Alignment:
Q  152 ttgtaaagtgtttatgcagggtgcataaggaactgacttatgcataataactt 204  Q
    |||| ||||||||||||||||||||||||||| ||||||||||||||||||||    
T  24686629 ttgtgaagtgtttatgcagggtgcataaggaaatgacttatgcataataactt 24686577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 152 - 204
Target Start/End: Original strand, 25574137 - 25574189
Alignment:
Q  152 ttgtaaagtgtttatgcagggtgcataaggaactgacttatgcataataactt 204  Q
    |||| ||||||||||||||||||||||||||| ||||||||||||||||||||    
T  25574137 ttgtgaagtgtttatgcagggtgcataaggaaatgacttatgcataataactt 25574189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 152 - 204
Target Start/End: Complemental strand, 16298978 - 16298926
Alignment:
Q  152 ttgtaaagtgtttatgcagggtgcataaggaactgacttatgcataataactt 204  Q
    |||| ||||| ||||||||||||||||||||| ||||||||||||||||||||    
T  16298978 ttgtgaagtgattatgcagggtgcataaggaaatgacttatgcataataactt 16298926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 79 - 116
Target Start/End: Original strand, 808744 - 808781
Alignment:
Q  79 tactgaaaccataattatggtttaatggttttgatagt 116  Q
    |||||||||||||| |||||||||||||||||||||||    
T  808744 tactgaaaccataagtatggtttaatggttttgatagt 808781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 79 - 116
Target Start/End: Original strand, 809115 - 809152
Alignment:
Q  79 tactgaaaccataattatggtttaatggttttgatagt 116  Q
    |||||||||||||| |||||||||||||||||||||||    
T  809115 tactgaaaccataagtatggtttaatggttttgatagt 809152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 79 - 116
Target Start/End: Original strand, 809486 - 809523
Alignment:
Q  79 tactgaaaccataattatggtttaatggttttgatagt 116  Q
    |||||||||||||| |||||||||||||||||||||||    
T  809486 tactgaaaccataagtatggtttaatggttttgatagt 809523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 79 - 116
Target Start/End: Original strand, 809656 - 809693
Alignment:
Q  79 tactgaaaccataattatggtttaatggttttgatagt 116  Q
    |||||||||||||| |||||||||||||||||||||||    
T  809656 tactgaaaccataagtatggtttaatggttttgatagt 809693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 79 - 116
Target Start/End: Original strand, 810027 - 810064
Alignment:
Q  79 tactgaaaccataattatggtttaatggttttgatagt 116  Q
    |||||||||||||| |||||||||||||||||||||||    
T  810027 tactgaaaccataagtatggtttaatggttttgatagt 810064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 79 - 116
Target Start/End: Complemental strand, 54754395 - 54754358
Alignment:
Q  79 tactgaaaccataattatggtttaatggttttgatagt 116  Q
    |||||||||||||| |||||||||||||||||||||||    
T  54754395 tactgaaaccataagtatggtttaatggttttgatagt 54754358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 152 - 204
Target Start/End: Complemental strand, 38010198 - 38010146
Alignment:
Q  152 ttgtaaagtgtttatgcagggtgcataaggaactgacttatgcataataactt 204  Q
    |||| ||||||||||||| ||||||||||||| |||||||||||  |||||||    
T  38010198 ttgtgaagtgtttatgcatggtgcataaggaaatgacttatgcaccataactt 38010146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 152 - 204
Target Start/End: Complemental strand, 55765538 - 55765486
Alignment:
Q  152 ttgtaaagtgtttatgcagggtgcataaggaactgacttatgcataataactt 204  Q
    |||||| ||||||||||| ||||||||||||| |||||||||||  |||||||    
T  55765538 ttgtaatgtgtttatgcacggtgcataaggaaatgacttatgcaccataactt 55765486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 79 - 121
Target Start/End: Original strand, 808945 - 808987
Alignment:
Q  79 tactgaaaccataattatggtttaatggttttgatagtcttct 121  Q
    |||| ||||||||| ||||||||||||||||||||||| ||||    
T  808945 tactaaaaccataagtatggtttaatggttttgatagtgttct 808987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 79 - 121
Target Start/End: Complemental strand, 54757765 - 54757723
Alignment:
Q  79 tactgaaaccataattatggtttaatggttttgatagtcttct 121  Q
    |||||||||||||| |||||| |||||||||||||||| ||||    
T  54757765 tactgaaaccataagtatggtataatggttttgatagtgttct 54757723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 77 - 118
Target Start/End: Original strand, 9560960 - 9561001
Alignment:
Q  77 attactgaaaccataattatggtttaatggttttgatagtct 118  Q
    |||||||||| | ||| |||||||||||||||||||||||||    
T  9560960 attactgaaatcgtaaatatggtttaatggttttgatagtct 9561001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 159 - 204
Target Start/End: Original strand, 13635741 - 13635786
Alignment:
Q  159 gtgtttatgcagggtgcataaggaactgacttatgcataataactt 204  Q
    ||||||||||| ||||||||||||| |||||||||||  |||||||    
T  13635741 gtgtttatgcacggtgcataaggaaatgacttatgcaccataactt 13635786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 152 - 193
Target Start/End: Complemental strand, 30357864 - 30357823
Alignment:
Q  152 ttgtaaagtgtttatgcagggtgcataaggaactgacttatg 193  Q
    |||| ||||||||||||| ||||||||||||| |||||||||    
T  30357864 ttgtgaagtgtttatgcacggtgcataaggaaatgacttatg 30357823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 159 - 204
Target Start/End: Original strand, 49492528 - 49492573
Alignment:
Q  159 gtgtttatgcagggtgcataaggaactgacttatgcataataactt 204  Q
    ||||||||||| ||||||||||||| |||||||||||  |||||||    
T  49492528 gtgtttatgcacggtgcataaggaaatgacttatgcaccataactt 49492573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 79 - 116
Target Start/End: Complemental strand, 54756760 - 54756723
Alignment:
Q  79 tactgaaaccataattatggtttaatggttttgatagt 116  Q
    |||||||||||||| |||||| ||||||||||||||||    
T  54756760 tactgaaaccataagtatggtataatggttttgatagt 54756723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 79 - 116
Target Start/End: Complemental strand, 54756961 - 54756924
Alignment:
Q  79 tactgaaaccataattatggtttaatggttttgatagt 116  Q
    |||||||||||||| |||||| ||||||||||||||||    
T  54756961 tactgaaaccataagtatggtataatggttttgatagt 54756924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 79 - 116
Target Start/End: Complemental strand, 54757564 - 54757527
Alignment:
Q  79 tactgaaaccataattatggtttaatggttttgatagt 116  Q
    |||||||||||||| |||||| ||||||||||||||||    
T  54757564 tactgaaaccataagtatggtataatggttttgatagt 54757527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 79 - 115
Target Start/End: Original strand, 809316 - 809352
Alignment:
Q  79 tactgaaaccataattatggtttaatggttttgatag 115  Q
    |||||||||||||| |||||||||||| |||||||||    
T  809316 tactgaaaccataagtatggtttaatgattttgatag 809352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 160 - 204
Target Start/End: Complemental strand, 10472546 - 10472502
Alignment:
Q  160 tgtttatgcagggtgcataaggaactgacttatgcataataactt 204  Q
    |||||||||| ||||||||||||| |||||||||||  |||||||    
T  10472546 tgtttatgcacggtgcataaggaaatgacttatgcaccataactt 10472502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 169; Significance: 9e-91; HSPs: 26)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 169; E-Value: 9e-91
Query Start/End: Original strand, 1 - 209
Target Start/End: Original strand, 24024482 - 24024690
Alignment:
Q  1 ttgtgtaatagtttttaatgaaattattattgttacatgattttaaataatgattaagatgttatacattgaaattattactgaaaccataattatggtt 100  Q
    ||||||||| ||||||||||||||||||||||||||||  |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  24024482 ttgtgtaatggtttttaatgaaattattattgttacatagttttaaataatgattaagatgttatacactgaaattattactgaaaccataattatggtt 24024581  T
Q  101 taatggttttgatagtcttctgtgagaaaccaaaataattgtctaatgattttgtaaagtgtttatgcagggtgcataaggaactgacttatgcataata 200  Q
    |||||||||||||| |||||| |||||||||||||||||||||||||| |||||| ||||||||||||| ||||||||||||| ||||||||||||||||    
T  24024582 taatggttttgataatcttctatgagaaaccaaaataattgtctaatggttttgtgaagtgtttatgcatggtgcataaggaattgacttatgcataata 24024681  T
Q  201 acttctccc 209  Q
    |||||||||    
T  24024682 acttctccc 24024690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 1 - 107
Target Start/End: Complemental strand, 28056208 - 28056102
Alignment:
Q  1 ttgtgtaatagtttttaatgaaattattattgttacatgattttaaataatgattaagatgttatacattgaaattattactgaaaccataattatggtt 100  Q
    ||||||||| ||||| ||||||||||||| || ||||||  |||||||||||||||| || ||||||| |||||||||||||||||| ||||  ||||||    
T  28056208 ttgtgtaatggttttaaatgaaattattaatggtacatgggtttaaataatgattaaaatattatacactgaaattattactgaaacaataagcatggtt 28056109  T
Q  101 taatggt 107  Q
    |||||||    
T  28056108 taatggt 28056102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 76 - 157
Target Start/End: Complemental strand, 28048325 - 28048244
Alignment:
Q  76 tattactgaaaccataattatggtttaatggttttgatagtcttctgtgagaaaccaaaataattgtctaatgattttgtaa 157  Q
    ||||||||||||||||| ||||||||||||||||||||||| |||| || ||||||||| |||||||||| || ||||||||    
T  28048325 tattactgaaaccataagtatggtttaatggttttgatagtgttctatgtgaaaccaaactaattgtctagtggttttgtaa 28048244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 41 - 133
Target Start/End: Complemental strand, 30771409 - 30771316
Alignment:
Q  41 ttttaaataatgattaagatgttatacattgaaattatt-actgaaaccataattatggtttaatggttttgatagtcttctgtgagaaaccaa 133  Q
    |||| ||||||||||||||||||||||| |||||||||  ||||||||||||| ||||| ||||||||||||| |||||||  || ||||||||    
T  30771409 tttttaataatgattaagatgttatacactgaaattatagactgaaaccataagtatggcttaatggttttgacagtcttcaatgtgaaaccaa 30771316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 69 - 153
Target Start/End: Complemental strand, 30771491 - 30771407
Alignment:
Q  69 ttgaaattattactgaaaccataattatggtttaatggttttgatagtcttctgtgagaaaccaaaataattgtctaatgatttt 153  Q
    ||||||| |||||| ||||||||| ||||| ||||||||||||| |||||||  || ||||||||||||||||||||||| ||||    
T  30771491 ttgaaatcattactaaaaccataagtatggcttaatggttttgacagtcttcaatgtgaaaccaaaataattgtctaatggtttt 30771407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 152 - 204
Target Start/End: Complemental strand, 5098773 - 5098721
Alignment:
Q  152 ttgtaaagtgtttatgcagggtgcataaggaactgacttatgcataataactt 204  Q
    |||| ||||||||||||||||||||||||||| ||||||||||||||||||||    
T  5098773 ttgtgaagtgtttatgcagggtgcataaggaaatgacttatgcataataactt 5098721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 79 - 153
Target Start/End: Complemental strand, 28056268 - 28056194
Alignment:
Q  79 tactgaaaccataattatggtttaatggttttgatagtcttctgtgagaaaccaaaataattgtctaatgatttt 153  Q
    |||||||||||||| |||||||||||||||||||||||||| | ||  ||||||| |||||||| ||||| ||||    
T  28056268 tactgaaaccataagtatggtttaatggttttgatagtcttgtatgtaaaaccaatataattgtgtaatggtttt 28056194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 152 - 204
Target Start/End: Complemental strand, 39548099 - 39548047
Alignment:
Q  152 ttgtaaagtgtttatgcagggtgcataaggaactgacttatgcataataactt 204  Q
    |||| ||||||||||||||||||||||||||| ||||||||| ||||||||||    
T  39548099 ttgtgaagtgtttatgcagggtgcataaggaaatgacttatgtataataactt 39548047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 152 - 204
Target Start/End: Original strand, 13081869 - 13081921
Alignment:
Q  152 ttgtaaagtgtttatgcagggtgcataaggaactgacttatgcataataactt 204  Q
    |||| ||||||||||| ||||||||||| ||| ||||||||||||||||||||    
T  13081869 ttgtgaagtgtttatgtagggtgcataatgaaatgacttatgcataataactt 13081921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 152 - 204
Target Start/End: Original strand, 40853688 - 40853740
Alignment:
Q  152 ttgtaaagtgtttatgcagggtgcataaggaactgacttatgcataataactt 204  Q
    |||| ||||||||||||||| ||||||||||| || |||||||||||||||||    
T  40853688 ttgtgaagtgtttatgcaggatgcataaggaaatggcttatgcataataactt 40853740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 79 - 121
Target Start/End: Original strand, 21173668 - 21173710
Alignment:
Q  79 tactgaaaccataattatggtttaatggttttgatagtcttct 121  Q
    |||||||||||||| ||||||||||||||||||||||| ||||    
T  21173668 tactgaaaccataagtatggtttaatggttttgatagtgttct 21173710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 79 - 121
Target Start/End: Complemental strand, 27970607 - 27970565
Alignment:
Q  79 tactgaaaccataattatggtttaatggttttgatagtcttct 121  Q
    |||||||||||||| ||||||||||||||||||||||| ||||    
T  27970607 tactgaaaccataagtatggtttaatggttttgatagtgttct 27970565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 79 - 116
Target Start/End: Original strand, 44348258 - 44348295
Alignment:
Q  79 tactgaaaccataattatggtttaatggttttgatagt 116  Q
    |||||||||||||| |||||||||||||||||||||||    
T  44348258 tactgaaaccataagtatggtttaatggttttgatagt 44348295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 79 - 116
Target Start/End: Original strand, 44350782 - 44350819
Alignment:
Q  79 tactgaaaccataattatggtttaatggttttgatagt 116  Q
    |||||||||||||| |||||||||||||||||||||||    
T  44350782 tactgaaaccataagtatggtttaatggttttgatagt 44350819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 152 - 204
Target Start/End: Complemental strand, 25995343 - 25995291
Alignment:
Q  152 ttgtaaagtgtttatgcagggtgcataaggaactgacttatgcataataactt 204  Q
    |||| |||| ||||||||| |||||||||||| || |||||||||||||||||    
T  25995343 ttgtgaagtatttatgcagagtgcataaggaaatgtcttatgcataataactt 25995291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 152 - 204
Target Start/End: Original strand, 36636946 - 36636998
Alignment:
Q  152 ttgtaaagtgtttatgcagggtgcataaggaactgacttatgcataataactt 204  Q
    |||| ||||||||||| ||||| |||||| || ||||||||||||||||||||    
T  36636946 ttgtgaagtgtttatgtagggtacataagaaaatgacttatgcataataactt 36636998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 79 - 121
Target Start/End: Complemental strand, 27970236 - 27970194
Alignment:
Q  79 tactgaaaccataattatggtttaatggttttgatagtcttct 121  Q
    |||||||||||||| ||||||||||||||||||| ||| ||||    
T  27970236 tactgaaaccataaatatggtttaatggttttgacagtgttct 27970194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 79 - 121
Target Start/End: Complemental strand, 28056741 - 28056699
Alignment:
Q  79 tactgaaaccataattatggtttaatggttttgatagtcttct 121  Q
    |||||||||||||| ||||||||||||||||||| ||| ||||    
T  28056741 tactgaaaccataaatatggtttaatggttttgacagtgttct 28056699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 152 - 201
Target Start/End: Original strand, 16142084 - 16142133
Alignment:
Q  152 ttgtaaagtgtttatgcagggtgcataaggaactgacttatgcataataa 201  Q
    |||| |||||||||||||| |||||||||||| || ||| ||||||||||    
T  16142084 ttgtgaagtgtttatgcagcgtgcataaggaaatggcttgtgcataataa 16142133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 79 - 116
Target Start/End: Original strand, 21173498 - 21173535
Alignment:
Q  79 tactgaaaccataattatggtttaatggttttgatagt 116  Q
    |||||||||||||| |||| ||||||||||||||||||    
T  21173498 tactgaaaccataagtatgatttaatggttttgatagt 21173535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 84 - 121
Target Start/End: Complemental strand, 27970401 - 27970364
Alignment:
Q  84 aaaccataattatggtttaatggttttgatagtcttct 121  Q
    ||||||||| ||||||||||||||||||||||| ||||    
T  27970401 aaaccataagtatggtttaatggttttgatagtgttct 27970364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 84 - 121
Target Start/End: Complemental strand, 28056906 - 28056869
Alignment:
Q  84 aaaccataattatggtttaatggttttgatagtcttct 121  Q
    ||||||||| ||||||||||||||||||||||| ||||    
T  28056906 aaaccataagtatggtttaatggttttgatagtgttct 28056869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 84 - 121
Target Start/End: Complemental strand, 30767614 - 30767577
Alignment:
Q  84 aaaccataattatggtttaatggttttgatagtcttct 121  Q
    ||||||||| ||||||||||||||||||||||| ||||    
T  30767614 aaaccataagtatggtttaatggttttgatagtgttct 30767577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 84 - 121
Target Start/End: Complemental strand, 30771777 - 30771740
Alignment:
Q  84 aaaccataattatggtttaatggttttgatagtcttct 121  Q
    ||||||||| ||||||||||||||||||||||| ||||    
T  30771777 aaaccataagtatggtttaatggttttgatagtgttct 30771740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 152 - 204
Target Start/End: Original strand, 4281797 - 4281849
Alignment:
Q  152 ttgtaaagtgtttatgcagggtgcataaggaactgacttatgcataataactt 204  Q
    |||| |||||||||| ||| || ||||||||| || |||||||||||||||||    
T  4281797 ttgtgaagtgtttatacagagtacataaggaaatgtcttatgcataataactt 4281849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 84 - 116
Target Start/End: Original strand, 44348464 - 44348496
Alignment:
Q  84 aaaccataattatggtttaatggttttgatagt 116  Q
    ||||||||| |||||||||||||||||||||||    
T  44348464 aaaccataagtatggtttaatggttttgatagt 44348496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0069 (Bit Score: 165; Significance: 2e-88; HSPs: 2)
Name: scaffold0069
Description:

Target: scaffold0069; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 1 - 201
Target Start/End: Complemental strand, 51567 - 51367
Alignment:
Q  1 ttgtgtaatagtttttaatgaaattattattgttacatgattttaaataatgattaagatgttatacattgaaattattactgaaaccataattatggtt 100  Q
    ||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  51567 ttgtgtaatggtttttaatgaaattattattgttacatggttttaaataatgattaagatgttatacactgaaattattactgaaaccataattatggtt 51468  T
Q  101 taatggttttgatagtcttctgtgagaaaccaaaataattgtctaatgattttgtaaagtgtttatgcagggtgcataaggaactgacttatgcataata 200  Q
    ||||||||||||||||||| | |||||||||||||||||||||||||| |||||| |||||||||||||||||||||||| || ||||||||||||||||    
T  51467 taatggttttgatagtcttatatgagaaaccaaaataattgtctaatggttttgtgaagtgtttatgcagggtgcataagaaaatgacttatgcataata 51368  T
Q  201 a 201  Q
    |    
T  51367 a 51367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0069; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 77 - 153
Target Start/End: Complemental strand, 51629 - 51553
Alignment:
Q  77 attactgaaaccataattatggtttaatggttttgatagtcttctgtgagaaaccaaaataattgtctaatgatttt 153  Q
    ||||| |||||||||| |||||||||||||||||||||||||| | || |||||||| |||||||| ||||| ||||    
T  51629 attaccgaaaccataagtatggtttaatggttttgatagtcttgtatgtgaaaccaagataattgtgtaatggtttt 51553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 164; Significance: 9e-88; HSPs: 28)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 164; E-Value: 9e-88
Query Start/End: Original strand, 1 - 204
Target Start/End: Original strand, 6797243 - 6797446
Alignment:
Q  1 ttgtgtaatagtttttaatgaaattattattgttacatgattttaaataatgattaagatgttatacattgaaattattactgaaaccataattatggtt 100  Q
    ||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||    
T  6797243 ttgtgtaatggtttttaatgaaattattattgttacatggttttaaataatgattaagatgttatacactgaaactattactgaaaccataattatggtt 6797342  T
Q  101 taatggttttgatagtcttctgtgagaaaccaaaataattgtctaatgattttgtaaagtgtttatgcagggtgcataaggaactgacttatgcataata 200  Q
    ||||||||||||||||||| | ||||||||||||||||||||||||| ||||||| ||||||||||||||| ||||||||||| ||||||||||||||||    
T  6797343 taatggttttgatagtcttttatgagaaaccaaaataattgtctaataattttgtgaagtgtttatgcaggatgcataaggaaatgacttatgcataata 6797442  T
Q  201 actt 204  Q
    ||||    
T  6797443 actt 6797446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 1 - 204
Target Start/End: Original strand, 45402728 - 45402931
Alignment:
Q  1 ttgtgtaatagtttttaatgaaattattattgttacatgattttaaataatgattaagatgttatacattgaaattattactgaaaccataattatggtt 100  Q
    |||||||||  |||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||    
T  45402728 ttgtgtaatgatttttaatgaaattattattgttacatggttttaaataatgattaagatgttatacactgaaattattattgaaaccataattatggtt 45402827  T
Q  101 taatggttttgatagtcttctgtgagaaaccaaaataattgtctaatgattttgtaaagtgtttatgcagggtgcataaggaactgacttatgcataata 200  Q
    ||||||||||||||||||| | ||||||||||||||||| |||||||| ||||||||||||||||||| |||||||||||||| | ||||||||||||||    
T  45402828 taatggttttgatagtcttttatgagaaaccaaaataatagtctaatggttttgtaaagtgtttatgctgggtgcataaggaaataacttatgcataata 45402927  T
Q  201 actt 204  Q
    ||||    
T  45402928 actt 45402931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 13 - 169
Target Start/End: Original strand, 21405900 - 21406055
Alignment:
Q  13 ttttaatgaaattattattgttacatgattttaaataatgattaagatgttatacattgaaattattactgaaaccataattatggtttaatggttttga 112  Q
    ||||||||||||||||||| |||||||| ||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||    
T  21405900 ttttaatgaaattattattattacatgactttaaataatgattaagatgttatacactgaaattattactgaaatcataattatggtttaatggttttga 21405999  T
Q  113 tagtcttctgtgagaaaccaaaataattgtctaatgattttgtaaagtgtttatgca 169  Q
    ||||||||| | |||||||||||||||| | ||||  |||||| |||||||||||||    
T  21406000 tagtcttctataagaaaccaaaataattat-taatagttttgtgaagtgtttatgca 21406055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 41 - 157
Target Start/End: Complemental strand, 12283398 - 12283282
Alignment:
Q  41 ttttaaataatgattaagatgttatacattgaaattattactgaaaccataattatggtttaatggttttgatagtcttctgtgagaaaccaaaataatt 140  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||| |||| |||||||||||||| |||||||  || |||||||||||||||    
T  12283398 ttttaaataatgattaagatgttatacactgaaattattactgaaaccataagtatgatttaatggttttgacagtcttcaatgtgaaaccaaaataatt 12283299  T
Q  141 gtctaatgattttgtaa 157  Q
    |||||||| ||||||||    
T  12283298 gtctaatggttttgtaa 12283282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 41 - 157
Target Start/End: Complemental strand, 10564269 - 10564153
Alignment:
Q  41 ttttaaataatgattaagatgttatacattgaaattattactgaaaccataattatggtttaatggttttgatagtcttctgtgagaaaccaaaataatt 140  Q
    ||||||||||||||||| |||||||||| ||||||||||||||||||||||| ||||  ||||||||||||| ||||| |  || |||||||||||||||    
T  10564269 ttttaaataatgattaaaatgttatacactgaaattattactgaaaccataagtatgacttaatggttttgacagtctacaatgtgaaaccaaaataatt 10564170  T
Q  141 gtctaatgattttgtaa 157  Q
    |||||||| ||||||||    
T  10564169 gtctaatggttttgtaa 10564153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 41 - 153
Target Start/End: Complemental strand, 12283507 - 12283395
Alignment:
Q  41 ttttaaataatgattaagatgttatacattgaaattattactgaaaccataattatggtttaatggttttgatagtcttctgtgagaaaccaaaataatt 140  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||| |||||| ||| || | || |||||||| ||||||    
T  12283507 ttttaaataatgattaagatgttatacactgaaattattactgaaaccataagtatggtttaatgattttgacagtattgtatgtgaaaccaagataatt 12283408  T
Q  141 gtctaatgatttt 153  Q
    || ||||| ||||    
T  12283407 gtgtaatggtttt 12283395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 41 - 153
Target Start/End: Complemental strand, 12283616 - 12283504
Alignment:
Q  41 ttttaaataatgattaagatgttatacattgaaattattactgaaaccataattatggtttaatggttttgatagtcttctgtgagaaaccaaaataatt 140  Q
    |||||||||||||||||||||||||||| |||||||||||| |||||||||| ||||||||||||||||||| ||| || | || |||||||| ||||||    
T  12283616 ttttaaataatgattaagatgttatacactgaaattattaccgaaaccataagtatggtttaatggttttgacagtattgtatgtgaaaccaagataatt 12283517  T
Q  141 gtctaatgatttt 153  Q
    || ||||| ||||    
T  12283516 gtgtaatggtttt 12283504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 74 - 157
Target Start/End: Complemental strand, 12283162 - 12283079
Alignment:
Q  74 attattactgaaaccataattatggtttaatggttttgatagtcttctgtgagaaaccaaaataattgtctaatgattttgtaa 157  Q
    |||||||||||||| |||| ||||||||||||||||||||||| |||| || |||||||| |||||||||||||| ||||||||    
T  12283162 attattactgaaactataagtatggtttaatggttttgatagtgttctatgtgaaaccaacataattgtctaatggttttgtaa 12283079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 77 - 153
Target Start/End: Original strand, 45402666 - 45402742
Alignment:
Q  77 attactgaaaccataattatggtttaatggttttgatagtcttctgtgagaaaccaaaataattgtctaatgatttt 153  Q
    |||||||||||||||| |||||||||||||||||||||||||| | || |||||||| |||||||| ||||||||||    
T  45402666 attactgaaaccataagtatggtttaatggttttgatagtcttgtatgtgaaaccaagataattgtgtaatgatttt 45402742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 63 - 154
Target Start/End: Complemental strand, 10564548 - 10564457
Alignment:
Q  63 tatacattgaaattattactgaaaccataattatggtttaatggttttgatagtcttctgtgagaaaccaaaataattgtctaatgattttg 154  Q
    |||||| ||||||||| ||||||||||||| ||||||||||||||||||||||| || | || ||||||| ||  ||||| ||||| |||||    
T  10564548 tatacactgaaattatgactgaaaccataagtatggtttaatggttttgatagtattgtatgtgaaaccataaatattgtgtaatggttttg 10564457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 76 - 154
Target Start/End: Complemental strand, 10563908 - 10563830
Alignment:
Q  76 tattactgaaaccataattatggtttaatggttttgatagtcttctgtgagaaaccaaaataattgtctaatgattttg 154  Q
    ||||||||||||||||| |||||||||| |||||||||||| ||   || |||||||| |||||||| |||||||||||    
T  10563908 tattactgaaaccataagtatggtttaacggttttgatagtattaaatgtgaaaccaagataattgtgtaatgattttg 10563830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 63 - 153
Target Start/End: Complemental strand, 10564356 - 10564266
Alignment:
Q  63 tatacattgaaattattactgaaaccataattatggtttaatggttttgatagtcttctgtgagaaaccaaaataattgtctaatgatttt 153  Q
    |||||| |||||||||| |||||||||||| |||| |||||||||||||||||| || | || |||||||| |||| ||| ||||| ||||    
T  10564356 tatacactgaaattatttctgaaaccataagtatgatttaatggttttgatagtattgtatgtgaaaccaagataaatgtgtaatggtttt 10564266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 152 - 202
Target Start/End: Original strand, 39007658 - 39007708
Alignment:
Q  152 ttgtaaagtgtttatgcagggtgcataaggaactgacttatgcataataac 202  Q
    |||| ||||||||||||||||||||||||||| ||||||||||||||||||    
T  39007658 ttgtgaagtgtttatgcagggtgcataaggaaatgacttatgcataataac 39007708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 77 - 153
Target Start/End: Original strand, 6797182 - 6797257
Alignment:
Q  77 attactgaaaccataattatggtttaatggttttgatagtcttctgtgagaaaccaaaataattgtctaatgatttt 153  Q
    ||||||||||||||| | ||||||||||||||||||||||||| | || |||||||| |||||||| ||||| ||||    
T  6797182 attactgaaaccatagt-atggtttaatggttttgatagtcttgtatgtgaaaccaagataattgtgtaatggtttt 6797257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 152 - 204
Target Start/End: Complemental strand, 34875546 - 34875494
Alignment:
Q  152 ttgtaaagtgtttatgcagggtgcataaggaactgacttatgcataataactt 204  Q
    |||| ||||||||||||||||||||||||||| || |||||||||||||||||    
T  34875546 ttgtgaagtgtttatgcagggtgcataaggaaatggcttatgcataataactt 34875494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 152 - 204
Target Start/End: Original strand, 44141260 - 44141312
Alignment:
Q  152 ttgtaaagtgtttatgcagggtgcataaggaactgacttatgcataataactt 204  Q
    |||| ||||||||||||||||||||||||||| |||||||||||| |||||||    
T  44141260 ttgtgaagtgtttatgcagggtgcataaggaaatgacttatgcatgataactt 44141312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 63 - 114
Target Start/End: Complemental strand, 10564643 - 10564592
Alignment:
Q  63 tatacattgaaattattactgaaaccataattatggtttaatggttttgata 114  Q
    |||||| ||||||||| ||||||||||||| |||||||||||||||||||||    
T  10564643 tatacactgaaattatgactgaaaccataagtatggtttaatggttttgata 10564592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 77 - 154
Target Start/End: Complemental strand, 10564725 - 10564648
Alignment:
Q  77 attactgaaaccataattatggtttaatggttttgatagtcttctgtgagaaaccaaaataattgtctaatgattttg 154  Q
    |||||||||||||||| ||||||||||||||||||||||| || | || ||||||| ||  ||||| ||||| |||||    
T  10564725 attactgaaaccataagtatggtttaatggttttgatagtattgtatgtgaaaccataaatattgtgtaatggttttg 10564648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 152 - 204
Target Start/End: Complemental strand, 5757443 - 5757391
Alignment:
Q  152 ttgtaaagtgtttatgcagggtgcataaggaactgacttatgcataataactt 204  Q
    |||| ||||||||||||| ||||||||||||| || |||||||||||||||||    
T  5757443 ttgtgaagtgtttatgcacggtgcataaggaaatgtcttatgcataataactt 5757391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 63 - 114
Target Start/End: Complemental strand, 10564452 - 10564401
Alignment:
Q  63 tatacattgaaattattactgaaaccataattatggtttaatggttttgata 114  Q
    |||||| ||||||||| || |||||||||| |||||||||||||||||||||    
T  10564452 tatacactgaaattatgaccgaaaccataagtatggtttaatggttttgata 10564401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 79 - 116
Target Start/End: Original strand, 4721019 - 4721056
Alignment:
Q  79 tactgaaaccataattatggtttaatggttttgatagt 116  Q
    |||||||||||||| |||||||||||||||||||||||    
T  4721019 tactgaaaccataagtatggtttaatggttttgatagt 4721056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 152 - 204
Target Start/End: Original strand, 46346725 - 46346777
Alignment:
Q  152 ttgtaaagtgtttatgcagggtgcataaggaactgacttatgcataataactt 204  Q
    |||| |||||||||| |||| |||||||| || ||||||||||||||||||||    
T  46346725 ttgtgaagtgtttatacaggatgcataagaaaatgacttatgcataataactt 46346777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 79 - 121
Target Start/End: Original strand, 13420428 - 13420470
Alignment:
Q  79 tactgaaaccataattatggtttaatggttttgatagtcttct 121  Q
    |||||||||||||| ||||||| ||||||||||||||| ||||    
T  13420428 tactgaaaccataagtatggttgaatggttttgatagtgttct 13420470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 79 - 121
Target Start/End: Original strand, 13420629 - 13420671
Alignment:
Q  79 tactgaaaccataattatggtttaatggttttgatagtcttct 121  Q
    |||||||||||||| |||||| |||||||||||||||| ||||    
T  13420629 tactgaaaccataagtatggtgtaatggttttgatagtgttct 13420671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 159 - 204
Target Start/End: Original strand, 16933260 - 16933305
Alignment:
Q  159 gtgtttatgcagggtgcataaggaactgacttatgcataataactt 204  Q
    ||||||||||| ||||||||||||| |||||||||||  |||||||    
T  16933260 gtgtttatgcacggtgcataaggaaatgacttatgcaccataactt 16933305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 159 - 204
Target Start/End: Original strand, 16938643 - 16938688
Alignment:
Q  159 gtgtttatgcagggtgcataaggaactgacttatgcataataactt 204  Q
    ||||||||||| ||||||||||||| |||||||||||  |||||||    
T  16938643 gtgtttatgcacggtgcataaggaaatgacttatgcaccataactt 16938688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 152 - 209
Target Start/End: Complemental strand, 24359928 - 24359871
Alignment:
Q  152 ttgtaaagtgtttatgcagggtgcataaggaactgacttatgcataataacttctccc 209  Q
    |||| ||||||| ||||| ||||||||||||| |||||||||||  ||||||| ||||    
T  24359928 ttgtgaagtgttgatgcacggtgcataaggaaatgacttatgcaccataacttttccc 24359871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 151 - 183
Target Start/End: Complemental strand, 48305293 - 48305261
Alignment:
Q  151 tttgtaaagtgtttatgcagggtgcataaggaa 183  Q
    ||||||||||||||||||| |||||||||||||    
T  48305293 tttgtaaagtgtttatgcacggtgcataaggaa 48305261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0460 (Bit Score: 161; Significance: 5e-86; HSPs: 2)
Name: scaffold0460
Description:

Target: scaffold0460; HSP #1
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 1 - 201
Target Start/End: Complemental strand, 1812 - 1612
Alignment:
Q  1 ttgtgtaatagtttttaatgaaattattattgttacatgattttaaataatgattaagatgttatacattgaaattattactgaaaccataattatggtt 100  Q
    ||||||||| ||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  1812 ttgtgtaatggtttttaatgaaagtattattgttacatggttttaaataatgattaagatgttatacactgaaattattactgaaaccataattatggtt 1713  T
Q  101 taatggttttgatagtcttctgtgagaaaccaaaataattgtctaatgattttgtaaagtgtttatgcagggtgcataaggaactgacttatgcataata 200  Q
    |||||||||||||| |||| | |||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||| ||||||||||||||||    
T  1712 taatggttttgatattcttttatgagaaaccaaaataattgtctaatggttttgtgaagtgtttatgcagggtgcataaggaaatgacttatgcataata 1613  T
Q  201 a 201  Q
    |    
T  1612 a 1612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0460; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 77 - 153
Target Start/End: Complemental strand, 1874 - 1798
Alignment:
Q  77 attactgaaaccataattatggtttaatggttttgatagtcttctgtgagaaaccaaaataattgtctaatgatttt 153  Q
    |||||||||||||||| |||||||||||||||||||||||||| | || |||||||| |||||||| ||||| ||||    
T  1874 attactgaaaccataagtatggtttaatggttttgatagtcttgtatgtgaaaccaagataattgtgtaatggtttt 1798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 160; Significance: 2e-85; HSPs: 3)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 1 - 204
Target Start/End: Complemental strand, 209534 - 209331
Alignment:
Q  1 ttgtgtaatagtttttaatgaaattattattgttacatgattttaaataatgattaagatgttatacattgaaattattactgaaaccataattatggtt 100  Q
    ||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||    
T  209534 ttgtgtaatggtttttaatgaaattattattgttacatggttttaaataatgattaagatgttatacactgaaattattactgaaacaataattatggtt 209435  T
Q  101 taatggttttgatagtcttctgtgagaaaccaaaataattgtctaatgattttgtaaagtgtttatgcagggtgcataaggaactgacttatgcataata 200  Q
    ||||||||||||||||||| | |||||||||||||||||||||||||  |||||| |||||||||||||||||||||||| || ||||||||||||||||    
T  209434 taatggttttgatagtcttatatgagaaaccaaaataattgtctaattgttttgtgaagtgtttatgcagggtgcataagaaaatgacttatgcataata 209335  T
Q  201 actt 204  Q
    ||||    
T  209334 actt 209331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006; HSP #2
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 89 - 201
Target Start/End: Complemental strand, 171625 - 171513
Alignment:
Q  89 ataattatggtttaatggttttgatagtcttctgtgagaaaccaaaataattgtctaatgattttgtaaagtgtttatgcagggtgcataaggaactgac 188  Q
    ||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||| |||||| |||||||||| |||||||||||||||| ||||    
T  171625 ataattatggtttaatggttttgatagtcttatatgagaaaccaaaataattgtctaatggttttgtgaagtgtttatacagggtgcataaggaaatgac 171526  T
Q  189 ttatgcataataa 201  Q
    |||||||||||||    
T  171525 ttatgcataataa 171513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 77 - 153
Target Start/End: Complemental strand, 209596 - 209520
Alignment:
Q  77 attactgaaaccataattatggtttaatggttttgatagtcttctgtgagaaaccaaaataattgtctaatgatttt 153  Q
    |||||||||||||||| ||| ||||||||||||||||| |||| | || |||||||| |||||||| ||||| ||||    
T  209596 attactgaaaccataagtatagtttaatggttttgataatcttgtatgtgaaaccaagataattgtgtaatggtttt 209520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012 (Bit Score: 152; Significance: 1e-80; HSPs: 2)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 1 - 204
Target Start/End: Complemental strand, 119410 - 119207
Alignment:
Q  1 ttgtgtaatagtttttaatgaaattattattgttacatgattttaaataatgattaagatgttatacattgaaattattactgaaaccataattatggtt 100  Q
    ||||||||| ||||||||||||||||||||||||||||  |||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||    
T  119410 ttgtgtaatggtttttaatgaaattattattgttacatagttttaaataatgattaagatgttatatactgaaattattactgaaaccataattatggtt 119311  T
Q  101 taatggttttgatagtcttctgtgagaaaccaaaataattgtctaatgattttgtaaagtgtttatgcagggtgcataaggaactgacttatgcataata 200  Q
    ||||||||||||||||||| | |||||||||||||||||||||||||| |||||| ||||||||||||||||||||||  ||| ||||||||| ||||||    
T  119310 taatggttttgatagtcttatatgagaaaccaaaataattgtctaatggttttgtgaagtgtttatgcagggtgcatatagaaatgacttatgtataata 119211  T
Q  201 actt 204  Q
    ||||    
T  119210 actt 119207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 77 - 153
Target Start/End: Complemental strand, 119472 - 119396
Alignment:
Q  77 attactgaaaccataattatggtttaatggttttgatagtcttctgtgagaaaccaaaataattgtctaatgatttt 153  Q
    |||||||||||||||| |||||||||||||||||||||||||| | || |||||||| |||||||| ||||| ||||    
T  119472 attactgaaaccataagtatggtttaatggttttgatagtcttgtatgtgaaaccaagataattgtgtaatggtttt 119396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 152; Significance: 1e-80; HSPs: 28)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 1 - 204
Target Start/End: Complemental strand, 32233199 - 32232996
Alignment:
Q  1 ttgtgtaatagtttttaatgaaattattattgttacatgattttaaataatgattaagatgttatacattgaaattattactgaaaccataattatggtt 100  Q
    |||||||||  |||||||||||||||||||||||||||| ||||||||||||||||||||| |||||| |  ||||||||| ||||| ||||||||||||    
T  32233199 ttgtgtaatgatttttaatgaaattattattgttacatggttttaaataatgattaagatgatatacacttgaattattaccgaaactataattatggtt 32233100  T
Q  101 taatggttttgatagtcttctgtgagaaaccaaaataattgtctaatgattttgtaaagtgtttatgcagggtgcataaggaactgacttatgcataata 200  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||| ||||||||||||||||    
T  32233099 taatggttttgatagtcttctatgagaaaccaaaataattgtctaatggttttgtgaagtgtttatgcagggtgcataaggaaatgacttatgcataata 32233000  T
Q  201 actt 204  Q
    ||||    
T  32232999 actt 32232996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 1 - 210
Target Start/End: Complemental strand, 41569037 - 41568830
Alignment:
Q  1 ttgtgtaatagtttttaatgaaattattattgttacatgattttaaataatgat----taagatgttatacattgaaattattactgaaaccataattat 96  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||    |||||||||||||||| ||||||||||||||||| |||||||    
T  41569037 ttgtgtaatggtttttaatgaaattattattgttacatgattttaaataatgatcgattaagatgttatacattaaaattattactgaaaccgtaattat 41568938  T
Q  97 ggtttaatggttttgatagtcttctgtgagaaaccaaaataattgtctaatgattttgtaaagtgtttatgcagggtgcataaggaactgacttatgcat 196  Q
    ||||||||| ||||||||||||||| |||||||||      ||||||||||| |||||| |||| |||||||| ||||||||||||| ||||||||||||    
T  41568937 ggtttaatgattttgatagtcttctatgagaaacc------attgtctaatggttttgtgaagtatttatgcatggtgcataaggaattgacttatgcat 41568844  T
Q  197 aataacttctcccc 210  Q
    ||||||||||||||    
T  41568843 aataacttctcccc 41568830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 77 - 153
Target Start/End: Complemental strand, 32233261 - 32233185
Alignment:
Q  77 attactgaaaccataattatggtttaatggttttgatagtcttctgtgagaaaccaaaataattgtctaatgatttt 153  Q
    |||||||||||||||| |||||||||||||||||||||||||| | || |||||||| |||||||| ||||||||||    
T  32233261 attactgaaaccataagtatggtttaatggttttgatagtcttgtatgtgaaaccaagataattgtgtaatgatttt 32233185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 76 - 157
Target Start/End: Original strand, 40219300 - 40219381
Alignment:
Q  76 tattactgaaaccataattatggtttaatggttttgatagtcttctgtgagaaaccaaaataattgtctaatgattttgtaa 157  Q
    ||||||||||||||||| |||||| |||||||||||||||| |||| || ||||||||| |||| |||||||| ||||||||    
T  40219300 tattactgaaaccataagtatggtctaatggttttgatagtgttctatgtgaaaccaaactaatggtctaatggttttgtaa 40219381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 76 - 157
Target Start/End: Original strand, 40219501 - 40219582
Alignment:
Q  76 tattactgaaaccataattatggtttaatggttttgatagtcttctgtgagaaaccaaaataattgtctaatgattttgtaa 157  Q
    ||||||||||||||||| |||||| |||||||||||||||| |||| || ||||||||| |||| |||||||| ||||||||    
T  40219501 tattactgaaaccataagtatggtctaatggttttgatagtgttctatgtgaaaccaaactaatggtctaatggttttgtaa 40219582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 76 - 157
Target Start/End: Original strand, 40219702 - 40219783
Alignment:
Q  76 tattactgaaaccataattatggtttaatggttttgatagtcttctgtgagaaaccaaaataattgtctaatgattttgtaa 157  Q
    ||||||||||||||||| |||||| |||||||||||||||| |||| || ||||||||| |||| |||||||| ||||||||    
T  40219702 tattactgaaaccataagtatggtctaatggttttgatagtgttctatgtgaaaccaaactaatggtctaatggttttgtaa 40219783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 76 - 157
Target Start/End: Original strand, 40219903 - 40219984
Alignment:
Q  76 tattactgaaaccataattatggtttaatggttttgatagtcttctgtgagaaaccaaaataattgtctaatgattttgtaa 157  Q
    ||||||||||||||||| |||||| |||||||||||||||| |||| || ||||||||| |||| |||||||| ||||||||    
T  40219903 tattactgaaaccataagtatggtctaatggttttgatagtgttctatgtgaaaccaaactaatggtctaatggttttgtaa 40219984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 51452983 - 51452934
Alignment:
Q  1 ttgtgtaatagtttttaatgaaattattattgttacatgattttaaataa 50  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  51452983 ttgtgtaatggtttttaatgaaattattattgttacatgattttaaataa 51452934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 157 - 204
Target Start/End: Original strand, 51682016 - 51682063
Alignment:
Q  157 aagtgtttatgcagggtgcataaggaactgacttatgcataataactt 204  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||    
T  51682016 aagtgtttatgcagggtgcataaggaaatgacttatgcataataactt 51682063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 152 - 204
Target Start/End: Complemental strand, 23755342 - 23755290
Alignment:
Q  152 ttgtaaagtgtttatgcagggtgcataaggaactgacttatgcataataactt 204  Q
    |||| ||||||||||||||||||||||||||| || |||||||||||||||||    
T  23755342 ttgtgaagtgtttatgcagggtgcataaggaaatgtcttatgcataataactt 23755290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 152 - 204
Target Start/End: Complemental strand, 47728445 - 47728393
Alignment:
Q  152 ttgtaaagtgtttatgcagggtgcataaggaactgacttatgcataataactt 204  Q
    |||| |||||||||||||||||||||||| || ||||||||||||||||||||    
T  47728445 ttgtgaagtgtttatgcagggtgcataagaaaatgacttatgcataataactt 47728393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 157 - 204
Target Start/End: Original strand, 37319474 - 37319521
Alignment:
Q  157 aagtgtttatgcagggtgcataaggaactgacttatgcataataactt 204  Q
    |||||||||||||||||||||||| || ||||||||||||||||||||    
T  37319474 aagtgtttatgcagggtgcataagaaaatgacttatgcataataactt 37319521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 155 - 204
Target Start/End: Original strand, 39195120 - 39195169
Alignment:
Q  155 taaagtgtttatgcagggtgcataaggaactgacttatgcataataactt 204  Q
    ||||||||| ||||||||||||| ||||| ||||||||||||||||||||    
T  39195120 taaagtgttcatgcagggtgcatgaggaaatgacttatgcataataactt 39195169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 152 - 204
Target Start/End: Complemental strand, 53595025 - 53594973
Alignment:
Q  152 ttgtaaagtgtttatgcagggtgcataaggaactgacttatgcataataactt 204  Q
    |||| |||||||||||||||||||||||| || || |||||||||||||||||    
T  53595025 ttgtgaagtgtttatgcagggtgcataagaaaatggcttatgcataataactt 53594973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 79 - 121
Target Start/End: Complemental strand, 11974977 - 11974935
Alignment:
Q  79 tactgaaaccataattatggtttaatggttttgatagtcttct 121  Q
    |||||||||||||| ||||||||||||||||||||||| ||||    
T  11974977 tactgaaaccataagtatggtttaatggttttgatagtgttct 11974935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 152 - 201
Target Start/End: Original strand, 28299961 - 28300010
Alignment:
Q  152 ttgtaaagtgtttatgcagggtgcataaggaactgacttatgcataataa 201  Q
    |||| ||||||||||||| ||| ||||||||| |||||||||||||||||    
T  28299961 ttgtgaagtgtttatgcatggtacataaggaaatgacttatgcataataa 28300010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 152 - 204
Target Start/End: Complemental strand, 9106324 - 9106272
Alignment:
Q  152 ttgtaaagtgtttatgcagggtgcataaggaactgacttatgcataataactt 204  Q
    |||||| ||||||||||| ||||||||||||| |||||||||||  |||||||    
T  9106324 ttgtaatgtgtttatgcacggtgcataaggaaatgacttatgcaccataactt 9106272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 152 - 204
Target Start/End: Complemental strand, 23699384 - 23699332
Alignment:
Q  152 ttgtaaagtgtttatgcagggtgcataaggaactgacttatgcataataactt 204  Q
    |||| |||||||||||||||||| ||||| || || |||||||||||||||||    
T  23699384 ttgtgaagtgtttatgcagggtgtataagaaaatgtcttatgcataataactt 23699332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 152 - 204
Target Start/End: Complemental strand, 23717839 - 23717787
Alignment:
Q  152 ttgtaaagtgtttatgcagggtgcataaggaactgacttatgcataataactt 204  Q
    |||| |||||||||||||||||| ||||| || || |||||||||||||||||    
T  23717839 ttgtgaagtgtttatgcagggtgtataagaaaatgtcttatgcataataactt 23717787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 152 - 204
Target Start/End: Complemental strand, 23736295 - 23736243
Alignment:
Q  152 ttgtaaagtgtttatgcagggtgcataaggaactgacttatgcataataactt 204  Q
    |||| |||||||||||||||||| ||||| || || |||||||||||||||||    
T  23736295 ttgtgaagtgtttatgcagggtgtataagaaaatgtcttatgcataataactt 23736243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 152 - 211
Target Start/End: Original strand, 41192359 - 41192418
Alignment:
Q  152 ttgtaaagtgtttatgcagggtgcataaggaactgacttatgcataataacttctcccca 211  Q
    |||| ||||||||||| | ||||||||||||| |||||||||||  ||||||| ||||||    
T  41192359 ttgtgaagtgtttatgtacggtgcataaggaaatgacttatgcaccataacttttcccca 41192418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 79 - 121
Target Start/End: Complemental strand, 11975147 - 11975105
Alignment:
Q  79 tactgaaaccataattatggtttaatggttttgatagtcttct 121  Q
    |||||||||||||| |||| |||||||||||||||||| ||||    
T  11975147 tactgaaaccataagtatgatttaatggttttgatagtgttct 11975105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 79 - 121
Target Start/End: Complemental strand, 11975317 - 11975275
Alignment:
Q  79 tactgaaaccataattatggtttaatggttttgatagtcttct 121  Q
    ||||||||| |||| ||||||||||||||||||||||| ||||    
T  11975317 tactgaaactataagtatggtttaatggttttgatagtgttct 11975275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 79 - 121
Target Start/End: Complemental strand, 11975487 - 11975445
Alignment:
Q  79 tactgaaaccataattatggtttaatggttttgatagtcttct 121  Q
    |||||||||||||| |||||| |||||||||||||||| ||||    
T  11975487 tactgaaaccataagtatggtataatggttttgatagtgttct 11975445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 159 - 204
Target Start/End: Original strand, 26662554 - 26662599
Alignment:
Q  159 gtgtttatgcagggtgcataaggaactgacttatgcataataactt 204  Q
    ||||||||||| ||||||||||||| || |||||||| ||||||||    
T  26662554 gtgtttatgcacggtgcataaggaaatggcttatgcacaataactt 26662599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 159 - 204
Target Start/End: Original strand, 30947927 - 30947972
Alignment:
Q  159 gtgtttatgcagggtgcataaggaactgacttatgcataataactt 204  Q
    ||||||||||| ||||||||||||| |||||||||||  |||||||    
T  30947927 gtgtttatgcacggtgcataaggaaatgacttatgcaccataactt 30947972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 159 - 204
Target Start/End: Original strand, 33414029 - 33414074
Alignment:
Q  159 gtgtttatgcagggtgcataaggaactgacttatgcataataactt 204  Q
    ||||||||||| ||||||||||||| |||||||||||  |||||||    
T  33414029 gtgtttatgcacggtgcataaggaaatgacttatgcaccataactt 33414074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 152 - 209
Target Start/End: Original strand, 51846789 - 51846846
Alignment:
Q  152 ttgtaaagtgtttatgcagggtgcataaggaactgacttatgcataataacttctccc 209  Q
    |||| ||||||||||||| ||||||||||||| || ||||||||  ||||||| ||||    
T  51846789 ttgtgaagtgtttatgcacggtgcataaggaaatggcttatgcaccataacttttccc 51846846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 152; Significance: 1e-80; HSPs: 30)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 1 - 204
Target Start/End: Complemental strand, 13590675 - 13590472
Alignment:
Q  1 ttgtgtaatagtttttaatgaaattattattgttacatgattttaaataatgattaagatgttatacattgaaattattactgaaaccataattatggtt 100  Q
    |||||||||  |||||||||||||||||||||||||||| |||||||||||||||||||||||||||| | ||||||||| |||| ||||||||||||||    
T  13590675 ttgtgtaatgatttttaatgaaattattattgttacatggttttaaataatgattaagatgttatacactcaaattattattgaacccataattatggtt 13590576  T
Q  101 taatggttttgatagtcttctgtgagaaaccaaaataattgtctaatgattttgtaaagtgtttatgcagggtgcataaggaactgacttatgcataata 200  Q
    ||||||||||||||||||| | ||||| |||||||||||||| ||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  13590575 taatggttttgatagtcttatatgagagaccaaaataattgtttaatggttttgtaaagtgtttatgcagggtgcataaggaaatgacttatgcataata 13590476  T
Q  201 actt 204  Q
    ||||    
T  13590475 actt 13590472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 1 - 201
Target Start/End: Complemental strand, 20372405 - 20372213
Alignment:
Q  1 ttgtgtaatagtttttaatgaaattattattgttacatgattttaaataatgattaagatgttatacattgaaattattactgaaaccataattatggtt 100  Q
    ||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||       
T  20372405 ttgtgtaatggtttttaatgaaattattattgttacatggttttaaataatgattaagatgttatacactgaaattattactgaaaccataattatg--- 20372309  T
Q  101 taatggttttgatagtcttctgtgagaaaccaaaataattgtctaatgattttgtaaagtgtttatgcagggtgcataaggaactgacttatgcataata 200  Q
         |||||||||||||| | |||||||||||||||||||||||||| |||||| |||||||||||||||||||||||| || ||||||||||||||||    
T  20372308 -----gttttgatagtcttatatgagaaaccaaaataattgtctaatggttttgtgaagtgtttatgcagggtgcataagaaaatgacttatgcataata 20372214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 46 - 204
Target Start/End: Original strand, 5077351 - 5077509
Alignment:
Q  46 aataatgattaagatgttatacattgaaattattactgaaaccataattatggtttaatggttttgatagtcttctgtgagaaaccaaaataattgtcta 145  Q
    ||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  5077351 aataatgattaagatgttatacactgaaattattactgaaaccatacttatggtttaatggttttgatagtcttctatgagaaaccaaaataattgtcta 5077450  T
Q  146 atgattttgtaaagtgtttatgcagggtgcataaggaactgacttatgcataataactt 204  Q
    |||||||||| ||||| |||||||||| |||||||||| ||||||||||||||||||||    
T  5077451 atgattttgtgaagtgcttatgcagggcgcataaggaaatgacttatgcataataactt 5077509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 89 - 201
Target Start/End: Complemental strand, 13674011 - 13673899
Alignment:
Q  89 ataattatggtttaatggttttgatagtcttctgtgagaaaccaaaataattgtctaatgattttgtaaagtgtttatgcagggtgcataaggaactgac 188  Q
    ||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||| |||||| |||||||||| |||||||||||||||| ||||    
T  13674011 ataattatggtttaatggttttgatagtcttatatgagaaaccaaaataattgtctaatggttttgtgaagtgtttatacagggtgcataaggaaatgac 13673912  T
Q  189 ttatgcataataa 201  Q
    |||||||||||||    
T  13673911 ttatgcataataa 13673899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 1 - 88
Target Start/End: Complemental strand, 20481301 - 20481214
Alignment:
Q  1 ttgtgtaatagtttttaatgaaattattattgttacatgattttaaataatgattaagatgttatacattgaaattattactgaaacc 88  Q
    ||||||||| ||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||    
T  20481301 ttgtgtaatggtttttaatgaaagtattattgttacatggttttaaataatgattaagatgttatacactgaaattattactgaaacc 20481214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 76 - 157
Target Start/End: Complemental strand, 19845893 - 19845812
Alignment:
Q  76 tattactgaaaccataattatggtttaatggttttgatagtcttctgtgagaaaccaaaataattgtctaatgattttgtaa 157  Q
    |||||| |||||||||| ||||||||||||||||||||||| |||| || ||||||||| ||||||||||||| ||||||||    
T  19845893 tattacagaaaccataagtatggtttaatggttttgatagtgttctatgtgaaaccaaactaattgtctaatggttttgtaa 19845812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 77 - 153
Target Start/End: Complemental strand, 13590737 - 13590661
Alignment:
Q  77 attactgaaaccataattatggtttaatggttttgatagtcttctgtgagaaaccaaaataattgtctaatgatttt 153  Q
    |||||||||||||||| |||| ||||||||||||||||||||| | || ||||| || |||||||| ||||||||||    
T  13590737 attactgaaaccataagtatgatttaatggttttgatagtcttgtatgtgaaacgaagataattgtgtaatgatttt 13590661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 77 - 153
Target Start/End: Complemental strand, 20372467 - 20372391
Alignment:
Q  77 attactgaaaccataattatggtttaatggttttgatagtcttctgtgagaaaccaaaataattgtctaatgatttt 153  Q
    ||||| |||||||||| |||||||||||||||||||||||||| | || |||||||| |||||||| ||||| ||||    
T  20372467 attaccgaaaccataagtatggtttaatggttttgatagtcttgtatgtgaaaccaagataattgtgtaatggtttt 20372391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 77 - 153
Target Start/End: Complemental strand, 20481363 - 20481287
Alignment:
Q  77 attactgaaaccataattatggtttaatggttttgatagtcttctgtgagaaaccaaaataattgtctaatgatttt 153  Q
    |||||||||||||||| |||||||||||||||||||||||||| | ||  ||||||| |||||||| ||||| ||||    
T  20481363 attactgaaaccataagtatggtttaatggttttgatagtcttgtatgtaaaaccaagataattgtgtaatggtttt 20481287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 152 - 204
Target Start/End: Complemental strand, 33097462 - 33097410
Alignment:
Q  152 ttgtaaagtgtttatgcagggtgcataaggaactgacttatgcataataactt 204  Q
    |||| ||||||||||||||||||||||||||| ||||||||||||||||||||    
T  33097462 ttgtgaagtgtttatgcagggtgcataaggaaatgacttatgcataataactt 33097410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 152 - 204
Target Start/End: Original strand, 51801742 - 51801794
Alignment:
Q  152 ttgtaaagtgtttatgcagggtgcataaggaactgacttatgcataataactt 204  Q
    |||| ||||||||||||||||||||||||||| ||||||||||||||||||||    
T  51801742 ttgtgaagtgtttatgcagggtgcataaggaaatgacttatgcataataactt 51801794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 152 - 204
Target Start/End: Complemental strand, 37639398 - 37639346
Alignment:
Q  152 ttgtaaagtgtttatgcagggtgcataaggaactgacttatgcataataactt 204  Q
    |||| ||||||||||||||||||||||||||| || |||||||||||||||||    
T  37639398 ttgtgaagtgtttatgcagggtgcataaggaaatgtcttatgcataataactt 37639346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 152 - 204
Target Start/End: Complemental strand, 44260575 - 44260523
Alignment:
Q  152 ttgtaaagtgtttatgcagggtgcataaggaactgacttatgcataataactt 204  Q
    |||| ||||||||||||||||||||||||||| ||||||| ||||||||||||    
T  44260575 ttgtgaagtgtttatgcagggtgcataaggaaatgacttacgcataataactt 44260523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 157 - 204
Target Start/End: Original strand, 35198195 - 35198242
Alignment:
Q  157 aagtgtttatgcagggtgcataaggaactgacttatgcataataactt 204  Q
    ||||||||||||||||||||||||||| || |||||||||||||||||    
T  35198195 aagtgtttatgcagggtgcataaggaaatgtcttatgcataataactt 35198242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 152 - 204
Target Start/End: Original strand, 31529674 - 31529726
Alignment:
Q  152 ttgtaaagtgtttatgcagggtgcataaggaactgacttatgcataataactt 204  Q
    |||| ||||||||||||| ||||||||||||| || |||||||||||||||||    
T  31529674 ttgtgaagtgtttatgcatggtgcataaggaaatggcttatgcataataactt 31529726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 152 - 204
Target Start/End: Original strand, 44688619 - 44688671
Alignment:
Q  152 ttgtaaagtgtttatgcagggtgcataaggaactgacttatgcataataactt 204  Q
    |||| |||||||||||||| |||||||||||| |||||||||||| |||||||    
T  44688619 ttgtgaagtgtttatgcagcgtgcataaggaaatgacttatgcatgataactt 44688671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 79 - 138
Target Start/End: Complemental strand, 19846130 - 19846071
Alignment:
Q  79 tactgaaaccataattatggtttaatggttttgatagtcttctgtgagaaaccaaaataa 138  Q
    |||||||||||||| ||||||||||||||||||||||| |||| ||  ||||||| ||||    
T  19846130 tactgaaaccataagtatggtttaatggttttgatagtgttctatgtaaaaccaagataa 19846071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 79 - 116
Target Start/End: Complemental strand, 37223310 - 37223273
Alignment:
Q  79 tactgaaaccataattatggtttaatggttttgatagt 116  Q
    |||||||||||||| |||||||||||||||||||||||    
T  37223310 tactgaaaccataagtatggtttaatggttttgatagt 37223273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 79 - 116
Target Start/End: Complemental strand, 37223650 - 37223613
Alignment:
Q  79 tactgaaaccataattatggtttaatggttttgatagt 116  Q
    |||||||||||||| |||||||||||||||||||||||    
T  37223650 tactgaaaccataagtatggtttaatggttttgatagt 37223613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 79 - 116
Target Start/End: Complemental strand, 37223820 - 37223783
Alignment:
Q  79 tactgaaaccataattatggtttaatggttttgatagt 116  Q
    |||||||||||||| |||||||||||||||||||||||    
T  37223820 tactgaaaccataagtatggtttaatggttttgatagt 37223783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 79 - 116
Target Start/End: Complemental strand, 37223990 - 37223953
Alignment:
Q  79 tactgaaaccataattatggtttaatggttttgatagt 116  Q
    |||||||||||||| |||||||||||||||||||||||    
T  37223990 tactgaaaccataagtatggtttaatggttttgatagt 37223953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 160 - 204
Target Start/End: Complemental strand, 51420394 - 51420350
Alignment:
Q  160 tgtttatgcagggtgcataaggaactgacttatgcataataactt 204  Q
    |||||||||||| ||||||| ||| ||||||||||||||||||||    
T  51420394 tgtttatgcaggatgcataaagaattgacttatgcataataactt 51420350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 158 - 213
Target Start/End: Original strand, 28323347 - 28323402
Alignment:
Q  158 agtgtttatgcagggtgcataaggaactgacttatgcataataacttctccccaaa 213  Q
    |||||||||| |||||||||||  || |||||||||||||||||||| | ||||||    
T  28323347 agtgtttatggagggtgcataaaaaaatgacttatgcataataacttttgcccaaa 28323402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 160 - 213
Target Start/End: Complemental strand, 2741085 - 2741032
Alignment:
Q  160 tgtttatgcagggtgcataaggaactgacttatgcataataacttctccccaaa 213  Q
    ||||||||||| || ||||| ||| ||||||||||||||||||||  |||||||    
T  2741085 tgtttatgcagagtacataaagaaatgacttatgcataataactttaccccaaa 2741032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 79 - 112
Target Start/End: Complemental strand, 37223480 - 37223447
Alignment:
Q  79 tactgaaaccataattatggtttaatggttttga 112  Q
    |||||||||||||| |||||||||||||||||||    
T  37223480 tactgaaaccataagtatggtttaatggttttga 37223447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 79 - 116
Target Start/End: Complemental strand, 37224160 - 37224123
Alignment:
Q  79 tactgaaaccataattatggtttaatggttttgatagt 116  Q
    |||||||||||||| |||||||||||| ||||||||||    
T  37224160 tactgaaaccataagtatggtttaatgattttgatagt 37224123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 159 - 204
Target Start/End: Original strand, 49936953 - 49936998
Alignment:
Q  159 gtgtttatgcagggtgcataaggaactgacttatgcataataactt 204  Q
    ||||||||||| ||||||||||||| |||||||||||  |||||||    
T  49936953 gtgtttatgcacggtgcataaggaaatgacttatgcaccataactt 49936998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 159 - 204
Target Start/End: Complemental strand, 50351853 - 50351808
Alignment:
Q  159 gtgtttatgcagggtgcataaggaactgacttatgcataataactt 204  Q
    ||||||||||| ||||||||||||| |||||||||||  |||||||    
T  50351853 gtgtttatgcacggtgcataaggaaatgacttatgcaccataactt 50351808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 152 - 204
Target Start/End: Complemental strand, 11421651 - 11421599
Alignment:
Q  152 ttgtaaagtgtttatgcagggtgcataaggaactgacttatgcataataactt 204  Q
    |||| ||||||||||||| ||||||||||||| ||| |||||||  |||||||    
T  11421651 ttgtgaagtgtttatgcacggtgcataaggaaatgatttatgcaccataactt 11421599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 164 - 204
Target Start/End: Complemental strand, 30788393 - 30788353
Alignment:
Q  164 tatgcagggtgcataaggaactgacttatgcataataactt 204  Q
    |||||||  ||||||||||| ||||||||||||||||||||    
T  30788393 tatgcagactgcataaggaaatgacttatgcataataactt 30788353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0717 (Bit Score: 151; Significance: 5e-80; HSPs: 2)
Name: scaffold0717
Description:

Target: scaffold0717; HSP #1
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 1 - 211
Target Start/End: Original strand, 7200 - 7410
Alignment:
Q  1 ttgtgtaatagtttttaatgaaattattattgttacatgattttaaataatgattaagatgttatacattgaaattattactgaaaccataattatggtt 100  Q
    ||||||||| ||||||||| ||||||||||||||||||| ||||||||| |||||||||||||||||| ||||||||||| |||||||||||||||| ||    
T  7200 ttgtgtaatggtttttaataaaattattattgttacatggttttaaatagtgattaagatgttatacactgaaattattagtgaaaccataattatgatt 7299  T
Q  101 taatggttttgatagtcttctgtgagaaaccaaaataattgtctaatgattttgtaaagtgtttatgcagggtgcataaggaactgacttatgcataata 200  Q
    ||||||||||||||| ||||| |||||||||||||||||| || |||| |||||| |||||||||||||||||||||||||| |||| ||||||||||||    
T  7300 taatggttttgatagccttctatgagaaaccaaaataattatcaaatggttttgtgaagtgtttatgcagggtgcataaggatctgatttatgcataata 7399  T
Q  201 acttctcccca 211  Q
    |||||||||||    
T  7400 acttctcccca 7410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0717; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 77 - 153
Target Start/End: Original strand, 7138 - 7214
Alignment:
Q  77 attactgaaaccataattatggtttaatggttttgatagtcttctgtgagaaaccaaaataattgtctaatgatttt 153  Q
    |||||||||||||||| ||||||||||| |||||||||||||| | || |||||||| |||||||| ||||| ||||    
T  7138 attactgaaaccataagtatggtttaattgttttgatagtcttgtatgtgaaaccaagataattgtgtaatggtttt 7214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 144; Significance: 8e-76; HSPs: 2)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 144; E-Value: 8e-76
Query Start/End: Original strand, 1 - 204
Target Start/End: Complemental strand, 450409 - 450207
Alignment:
Q  1 ttgtgtaatagtttttaatgaaattattattgttacatgattttaaataatgattaagatgttatacattgaaattattactgaaaccataattatggtt 100  Q
    ||||||||| ||||||||||||||||||||||||||||  |||||||||||||||||||||||||||| | |||||||||||||| ||||||||||||||    
T  450409 ttgtgtaatggtttttaatgaaattattattgttacattgttttaaataatgattaagatgttatacactaaaattattactgaa-ccataattatggtt 450311  T
Q  101 taatggttttgatagtcttctgtgagaaaccaaaataattgtctaatgattttgtaaagtgtttatgcagggtgcataaggaactgacttatgcataata 200  Q
    ||||| ||||||||||||||| |||||||||||||||||||||||||| |||| | ||||||||||||| |||| |||||||| ||||||||||||||||    
T  450310 taatgattttgatagtcttctatgagaaaccaaaataattgtctaatggttttatgaagtgtttatgcaaggtgtataaggaaatgacttatgcataata 450211  T
Q  201 actt 204  Q
    ||||    
T  450210 actt 450207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 77 - 153
Target Start/End: Complemental strand, 450471 - 450395
Alignment:
Q  77 attactgaaaccataattatggtttaatggttttgatagtcttctgtgagaaaccaaaataattgtctaatgatttt 153  Q
    |||||||||| ||||| |||| ||||||||||||||||||||| | || |||||||| |||||||| ||||| ||||    
T  450471 attactgaaatcataagtatgatttaatggttttgatagtcttgtatgtgaaaccaagataattgtgtaatggtttt 450395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 130; Significance: 2e-67; HSPs: 27)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 44 - 209
Target Start/End: Original strand, 44508953 - 44509118
Alignment:
Q  44 taaataatgattaagatgttatacattgaaattattactgaaaccataattatggtttaatggttttgatagtcttctgtgagaaaccaaaataattgtc 143  Q
    ||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||    
T  44508953 taaataatgattaagatgttatacactgaaattattattgaaaccataattatggtttaatggttttgatagtcttctatgagaaatcaaaataattgtc 44509052  T
Q  144 taatgattttgtaaagtgtttatgcagggtgcataaggaactgacttatgcataataacttctccc 209  Q
    ||||| |||||| |||||||| | ||||||||||| ||||||||||||||||||||||||||||||    
T  44509053 taatggttttgtgaagtgtttctacagggtgcatatggaactgacttatgcataataacttctccc 44509118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 76 - 157
Target Start/End: Complemental strand, 17225461 - 17225380
Alignment:
Q  76 tattactgaaaccataattatggtttaatggttttgatagtcttctgtgagaaaccaaaataattgtctaatgattttgtaa 157  Q
    |||||| |||||||||| ||||||||||||||||||||||| |||| || ||||||||| ||||||||||||| ||||||||    
T  17225461 tattacagaaaccataagtatggtttaatggttttgatagtgttctatgtgaaaccaaactaattgtctaatggttttgtaa 17225380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 76 - 157
Target Start/End: Complemental strand, 40005649 - 40005568
Alignment:
Q  76 tattactgaaaccataattatggtttaatggttttgatagtcttctgtgagaaaccaaaataattgtctaatgattttgtaa 157  Q
    ||||||||||||||||| |||||| |||||||||||||||| |||| || ||||||||| |||| |||||||| ||||||||    
T  40005649 tattactgaaaccataagtatggtctaatggttttgatagtgttctatgtgaaaccaaactaatggtctaatggttttgtaa 40005568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 76 - 157
Target Start/End: Complemental strand, 40005850 - 40005769
Alignment:
Q  76 tattactgaaaccataattatggtttaatggttttgatagtcttctgtgagaaaccaaaataattgtctaatgattttgtaa 157  Q
    ||||||||||||||||| |||||| |||||||||||||| | |||| || ||||||||| |||| |||||||| ||||||||    
T  40005850 tattactgaaaccataagtatggtctaatggttttgatactgttctatgtgaaaccaaactaatggtctaatggttttgtaa 40005769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 152 - 204
Target Start/End: Complemental strand, 2522924 - 2522872
Alignment:
Q  152 ttgtaaagtgtttatgcagggtgcataaggaactgacttatgcataataactt 204  Q
    |||| ||||||||||||||||||||||||||| ||||||||||||||||||||    
T  2522924 ttgtgaagtgtttatgcagggtgcataaggaaatgacttatgcataataactt 2522872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 152 - 204
Target Start/End: Original strand, 40247294 - 40247346
Alignment:
Q  152 ttgtaaagtgtttatgcagggtgcataaggaactgacttatgcataataactt 204  Q
    |||| ||||||||||||||||||||||||||| ||||||||||||||||||||    
T  40247294 ttgtgaagtgtttatgcagggtgcataaggaaatgacttatgcataataactt 40247346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 82 - 157
Target Start/End: Complemental strand, 40006045 - 40005970
Alignment:
Q  82 tgaaaccataattatggtttaatggttttgatagtcttctgtgagaaaccaaaataattgtctaatgattttgtaa 157  Q
    ||||||||||| |||||| |||||||||||||||| |||| || ||||||||| |||| |||||||| ||||||||    
T  40006045 tgaaaccataagtatggtctaatggttttgatagtgttctatgtgaaaccaaactaatggtctaatggttttgtaa 40005970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 157 - 204
Target Start/End: Original strand, 10443584 - 10443631
Alignment:
Q  157 aagtgtttatgcagggtgcataaggaactgacttatgcataataactt 204  Q
    ||||||||||||||||||||||||||| || |||||||||||||||||    
T  10443584 aagtgtttatgcagggtgcataaggaaatggcttatgcataataactt 10443631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 152 - 204
Target Start/End: Complemental strand, 12355479 - 12355427
Alignment:
Q  152 ttgtaaagtgtttatgcagggtgcataaggaactgacttatgcataataactt 204  Q
    |||| |||||||||||||||||||||||| || |||||||||| |||||||||    
T  12355479 ttgtgaagtgtttatgcagggtgcataagaaaatgacttatgcgtaataactt 12355427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 79 - 121
Target Start/End: Original strand, 17057590 - 17057632
Alignment:
Q  79 tactgaaaccataattatggtttaatggttttgatagtcttct 121  Q
    |||||||||||||| ||||||||||||||||||||||| ||||    
T  17057590 tactgaaaccataagtatggtttaatggttttgatagtgttct 17057632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 79 - 121
Target Start/End: Complemental strand, 17225700 - 17225658
Alignment:
Q  79 tactgaaaccataattatggtttaatggttttgatagtcttct 121  Q
    |||||||||||||| ||||||||||||||||||||||| ||||    
T  17225700 tactgaaaccataagtatggtttaatggttttgatagtgttct 17225658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 79 - 121
Target Start/End: Complemental strand, 17590635 - 17590593
Alignment:
Q  79 tactgaaaccataattatggtttaatggttttgatagtcttct 121  Q
    |||||||||||||| ||||||||||||||||||||||| ||||    
T  17590635 tactgaaaccataagtatggtttaatggttttgatagtgttct 17590593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 82 - 132
Target Start/End: Complemental strand, 40006217 - 40006167
Alignment:
Q  82 tgaaaccataattatggtttaatggttttgatagtcttctgtgagaaacca 132  Q
    ||||||||||| ||||||||||||||||||||||| |||| || |||||||    
T  40006217 tgaaaccataagtatggtttaatggttttgatagtgttctatgtgaaacca 40006167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 152 - 209
Target Start/End: Complemental strand, 9852327 - 9852270
Alignment:
Q  152 ttgtaaagtgtttatgcagggtgcataaggaactgacttatgcataataacttctccc 209  Q
    |||| ||||||||||||| ||||||||||||| |||||||||||  ||||||| ||||    
T  9852327 ttgtgaagtgtttatgcacggtgcataaggaaatgacttatgcaccataacttttccc 9852270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 152 - 213
Target Start/End: Original strand, 13526680 - 13526741
Alignment:
Q  152 ttgtaaagtgtttatgcagggtgcataaggaactgacttatgcataataacttctccccaaa 213  Q
    |||| |||||||||||||| || ||||||||| || |||||||||||||||||  |||||||    
T  13526680 ttgtgaagtgtttatgcagagtacataaggaaatggcttatgcataataactttgccccaaa 13526741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 152 - 213
Target Start/End: Original strand, 13616215 - 13616276
Alignment:
Q  152 ttgtaaagtgtttatgcagggtgcataaggaactgacttatgcataataacttctccccaaa 213  Q
    |||| |||||||||||||| || ||||||||| || |||||||||||||||||  |||||||    
T  13616215 ttgtgaagtgtttatgcagagtacataaggaaatggcttatgcataataactttgccccaaa 13616276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 152 - 209
Target Start/End: Original strand, 34648137 - 34648194
Alignment:
Q  152 ttgtaaagtgtttatgcagggtgcataaggaactgacttatgcataataacttctccc 209  Q
    |||| ||||||||||||| ||||||||||||| |||||||||||  ||||||| ||||    
T  34648137 ttgtgaagtgtttatgcacggtgcataaggaaatgacttatgcaccataacttttccc 34648194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 152 - 195
Target Start/End: Complemental strand, 23396534 - 23396491
Alignment:
Q  152 ttgtaaagtgtttatgcagggtgcataaggaactgacttatgca 195  Q
    |||||||||||||||||| ||||||||||||| || ||||||||    
T  23396534 ttgtaaagtgtttatgcacggtgcataaggaaatggcttatgca 23396491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 82 - 116
Target Start/End: Complemental strand, 40006131 - 40006097
Alignment:
Q  82 tgaaaccataattatggtttaatggttttgatagt 116  Q
    ||||||||||| |||||||||||||||||||||||    
T  40006131 tgaaaccataagtatggtttaatggttttgatagt 40006097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 82 - 132
Target Start/End: Complemental strand, 40006174 - 40006124
Alignment:
Q  82 tgaaaccataattatggtttaatggttttgatagtcttctgtgagaaacca 132  Q
    ||||||||||| |||||| |||||||||||||||| |||| || |||||||    
T  40006174 tgaaaccataagtatggtgtaatggttttgatagtgttctatgtgaaacca 40006124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 79 - 116
Target Start/End: Original strand, 17057388 - 17057425
Alignment:
Q  79 tactgaaaccataattatggtttaatggttttgatagt 116  Q
    |||||||||||||| ||||||| |||||||||||||||    
T  17057388 tactgaaaccataagtatggttgaatggttttgatagt 17057425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 79 - 116
Target Start/End: Complemental strand, 17590837 - 17590800
Alignment:
Q  79 tactgaaaccataattatggtttaatggttttgatagt 116  Q
    |||||||||||||| ||||||| |||||||||||||||    
T  17590837 tactgaaaccataagtatggttgaatggttttgatagt 17590800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 159 - 204
Target Start/End: Complemental strand, 30413964 - 30413919
Alignment:
Q  159 gtgtttatgcagggtgcataaggaactgacttatgcataataactt 204  Q
    ||||||||||| ||||||||||||| |||||||||||  |||||||    
T  30413964 gtgtttatgcacggtgcataaggaaatgacttatgcagcataactt 30413919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 152 - 204
Target Start/End: Complemental strand, 15181847 - 15181795
Alignment:
Q  152 ttgtaaagtgtttatgcagggtgcataaggaactgacttatgcataataactt 204  Q
    |||| |||||||||||||||||||||||||||     ||||||||||||||||    
T  15181847 ttgtgaagtgtttatgcagggtgcataaggaaacatattatgcataataactt 15181795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 152 - 204
Target Start/End: Complemental strand, 15227087 - 15227035
Alignment:
Q  152 ttgtaaagtgtttatgcagggtgcataaggaactgacttatgcataataactt 204  Q
    |||||| ||||||||||| ||||||||||||| | |||||||||  |||||||    
T  15227087 ttgtaatgtgtttatgcacggtgcataaggaaataacttatgcaccataactt 15227035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 165 - 213
Target Start/End: Original strand, 28698603 - 28698651
Alignment:
Q  165 atgcagggtgcataaggaactgacttatgcataataacttctccccaaa 213  Q
    |||||||||||||||| || || |||||||||||||||||  |||||||    
T  28698603 atgcagggtgcataagaaaatggcttatgcataataactttgccccaaa 28698651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 152 - 200
Target Start/End: Complemental strand, 30652006 - 30651958
Alignment:
Q  152 ttgtaaagtgtttatgcagggtgcataaggaactgacttatgcataata 200  Q
    |||| ||||||||||||||||||||||||||| |   ||||||||||||    
T  30652006 ttgtgaagtgtttatgcagggtgcataaggaaatagattatgcataata 30651958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 129; Significance: 7e-67; HSPs: 21)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 1 - 183
Target Start/End: Complemental strand, 7851544 - 7851365
Alignment:
Q  1 ttgtgtaatagtttttaatgaaattattattgttacatgattttaaataatgattaagatgttatacattgaaattattactgaaaccataattatggtt 100  Q
    |||||||||  |||||||||||||||||||| ||||||| ||||||||||||||||||||||   |||||||||||||||||||||||||||||||||||    
T  7851544 ttgtgtaatgatttttaatgaaattattatttttacatggttttaaataatgattaagatgt---acattgaaattattactgaaaccataattatggtt 7851448  T
Q  101 taatggttttgatagtcttctgtgagaaaccaaaataattgtctaatgattttgtaaagtgtttatgcagggtgcataaggaa 183  Q
    ||||||||||||||||||||| |||||||||||||||||| ||||||| |||||| | |||||||||||||||||||| ||||    
T  7851447 taatggttttgatagtcttctatgagaaaccaaaataattttctaatggttttgtgacgtgtttatgcagggtgcatatggaa 7851365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 12 - 204
Target Start/End: Complemental strand, 32556542 - 32556349
Alignment:
Q  12 tttttaatgaaattattattgttacatgattttaaataatgattaagat-gttatacattgaaattattactgaaaccataattatggtttaatggtttt 110  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||| |||||||| ||||||||||| ||||||||||||||| ||||| |||||||    
T  32556542 tttttaatgaaattattattgttacatggttttaaataatgattaagatagttatacactgaaattattattgaaaccataattattgtttagtggtttt 32556443  T
Q  111 gatagtcttctgtgagaaaccaaaataattgtctaatgattttgtaaagtgtttatgcagggtgcataaggaactgacttatgcataataactt 204  Q
    |||| |||||| ||| |||| ||||||||||||||||  |||| | || ||||||||||||||||||||| || ||||||||||||||||||||    
T  32556442 gataatcttctatgaaaaactaaaataattgtctaatcgttttctgaattgtttatgcagggtgcataagaaaatgacttatgcataataactt 32556349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 1 - 157
Target Start/End: Original strand, 18762702 - 18762858
Alignment:
Q  1 ttgtgtaatagtttttaatgaaattattattgttacatgattttaaataatgattaagatgttatacattgaaattattactgaaaccataattatggtt 100  Q
    |||| |||| ||||| |||||||||||||||| |||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||| |||||||    
T  18762702 ttgtctaatggttttaaatgaaattattattggtacatgattttaaataatgattaacatgttatacactgaaattattactgaaaccataagtatggtt 18762801  T
Q  101 taatggttttgatagtcttctgtgagaaaccaaaataattgtctaatgattttgtaa 157  Q
    |||||||||||| |||||||  || ||||||||||||||||||||||| ||||||||    
T  18762802 taatggttttgacagtcttcaatgtgaaaccaaaataattgtctaatggttttgtaa 18762858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 41 - 153
Target Start/End: Original strand, 18762604 - 18762716
Alignment:
Q  41 ttttaaataatgattaagatgttatacattgaaattattactgaaaccataattatggtttaatggttttgatagtcttctgtgagaaaccaaaataatt 140  Q
    |||||||||||||||||||||||||||| ||||||||||| |||||| |||| |||||||||||| ||||||||||||||  ||||||||||||||||||    
T  18762604 ttttaaataatgattaagatgttatacactgaaattattaatgaaacaataagtatggtttaatgattttgatagtcttcattgagaaaccaaaataatt 18762703  T
Q  141 gtctaatgatttt 153  Q
    |||||||| ||||    
T  18762704 gtctaatggtttt 18762716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 41 - 153
Target Start/End: Original strand, 18762495 - 18762607
Alignment:
Q  41 ttttaaataatgattaagatgttatacattgaaattattactgaaaccataattatggtttaatggttttgatagtcttctgtgagaaaccaaaataatt 140  Q
    ||||||||||||||||||| |||||||| ||||||||||||||||||||||| ||||||||||||||||||||||| || | || |||| ||| |||| |    
T  18762495 ttttaaataatgattaagaggttatacactgaaattattactgaaaccataagtatggtttaatggttttgatagtattgtatgtgaaaacaagataaat 18762594  T
Q  141 gtctaatgatttt 153  Q
    || ||||| ||||    
T  18762595 gtgtaatggtttt 18762607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 132 - 209
Target Start/End: Original strand, 27079919 - 27079996
Alignment:
Q  132 aaaataattgtctaatgattttgtaaagtgtttatgcagggtgcataaggaactgacttatgcataataacttctccc 209  Q
    ||||||||||||||||  |||||| ||||||||||||| |||||||||| || |||||||||||||||||||||||||    
T  27079919 aaaataattgtctaatagttttgtgaagtgtttatgcacggtgcataagaaaatgacttatgcataataacttctccc 27079996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 82 - 153
Target Start/End: Complemental strand, 32556611 - 32556540
Alignment:
Q  82 tgaaaccataattatggtttaatggttttgatagtcttctgtgagaaaccaaaataattgtctaatgatttt 153  Q
    ||||||||||| ||||||||||||||||||||||||||   || |||||||| |||||||| ||||||||||    
T  32556611 tgaaaccataaatatggtttaatggttttgatagtcttgcatgtgaaaccaagataattgtgtaatgatttt 32556540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 76 - 148
Target Start/End: Complemental strand, 28123142 - 28123070
Alignment:
Q  76 tattactgaaaccataattatggtttaatggttttgatagtcttctgtgagaaaccaaaataattgtctaatg 148  Q
    |||||| |||||||||  ||||||||||||||||||||||| |||| || ||||||||| |||||||| ||||    
T  28123142 tattacagaaaccatatgtatggtttaatggttttgatagtgttctatgtgaaaccaaactaattgtcaaatg 28123070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 80 - 153
Target Start/End: Complemental strand, 7851603 - 7851530
Alignment:
Q  80 actgaaaccataattatggtttaatggttttgatagtcttctgtgagaaaccaaaataattgtctaatgatttt 153  Q
    ||||||||||||| | |||||||||| ||||||||||||| | ||  ||||||| |||||||| ||||||||||    
T  7851603 actgaaaccataagtgtggtttaatgattttgatagtcttgtatgtaaaaccaagataattgtgtaatgatttt 7851530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 83 - 157
Target Start/End: Complemental strand, 28123004 - 28122930
Alignment:
Q  83 gaaaccataattatggtttaatggttttgatagtcttctgtgagaaaccaaaataattgtctaatgattttgtaa 157  Q
    |||||||||  |||||||||||||||||||  || |||| |  ||||||||| ||||||||||||| ||||||||    
T  28123004 gaaaccatatgtatggtttaatggttttgacggtgttctatatgaaaccaaactaattgtctaatggttttgtaa 28122930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 157 - 202
Target Start/End: Original strand, 16968037 - 16968082
Alignment:
Q  157 aagtgtttatgcagggtgcataaggaactgacttatgcataataac 202  Q
    |||||||||||||||||||||||| || || |||||||||||||||    
T  16968037 aagtgtttatgcagggtgcataagaaaatggcttatgcataataac 16968082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 79 - 116
Target Start/End: Original strand, 22038107 - 22038144
Alignment:
Q  79 tactgaaaccataattatggtttaatggttttgatagt 116  Q
    |||||||||||||| |||||||||||||||||||||||    
T  22038107 tactgaaaccataagtatggtttaatggttttgatagt 22038144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 152 - 209
Target Start/End: Complemental strand, 30908709 - 30908652
Alignment:
Q  152 ttgtaaagtgtttatgcagggtgcataaggaactgacttatgcataataacttctccc 209  Q
    |||| ||||||||||||| ||||||||||||| |||||||||||  ||||||| ||||    
T  30908709 ttgtgaagtgtttatgcacggtgcataaggaaatgacttatgcaccataacttttccc 30908652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 152 - 204
Target Start/End: Complemental strand, 18611245 - 18611193
Alignment:
Q  152 ttgtaaagtgtttatgcagggtgcataaggaactgacttatgcataataactt 204  Q
    |||| |||||||||||||| |||||||| ||| || |||||||||||||||||    
T  18611245 ttgtgaagtgtttatgcagagtgcataaagaaatgtcttatgcataataactt 18611193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 157 - 204
Target Start/End: Original strand, 4338634 - 4338681
Alignment:
Q  157 aagtgtttatgcagggtgcataaggaactgacttatgcataataactt 204  Q
    |||||||||||||||||||||||| || || ||||||||||| |||||    
T  4338634 aagtgtttatgcagggtgcataagaaaatggcttatgcataacaactt 4338681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 79 - 138
Target Start/End: Complemental strand, 28123578 - 28123519
Alignment:
Q  79 tactgaaaccataattatggtttaatggttttgatagtcttctgtgagaaaccaaaataa 138  Q
    |||||||||||||| |||||| |||||||||||||||| |||| ||  ||||||| ||||    
T  28123578 tactgaaaccataagtatggtataatggttttgatagtgttctatgtaaaaccaatataa 28123519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 79 - 121
Target Start/End: Complemental strand, 15034078 - 15034036
Alignment:
Q  79 tactgaaaccataattatggtttaatggttttgatagtcttct 121  Q
    |||||||||||||| |||||| |||||||||||||||| ||||    
T  15034078 tactgaaaccataagtatggtataatggttttgatagtgttct 15034036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 79 - 116
Target Start/End: Complemental strand, 28123379 - 28123342
Alignment:
Q  79 tactgaaaccataattatggtttaatggttttgatagt 116  Q
    |||||||||||||| |||||| ||||||||||||||||    
T  28123379 tactgaaaccataagtatggtataatggttttgatagt 28123342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 159 - 204
Target Start/End: Complemental strand, 31216712 - 31216667
Alignment:
Q  159 gtgtttatgcagggtgcataaggaactgacttatgcataataactt 204  Q
    ||||||||||| ||||||||||||| |||||||||||  |||||||    
T  31216712 gtgtttatgcacggtgcataaggaaatgacttatgcaccataactt 31216667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 77 - 153
Target Start/End: Original strand, 18762422 - 18762498
Alignment:
Q  77 attactgaaaccataattatggtttaatggttttgatagtcttctgtgagaaaccaaaataattgtctaatgatttt 153  Q
    ||||||||||| |||| |||||||||||||||||  |||| ||   || |||||||| |||||||| ||||| ||||    
T  18762422 attactgaaacaataagtatggtttaatggtttttttagtattgcatgtgaaaccaagataattgtgtaatggtttt 18762498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 84 - 116
Target Start/End: Original strand, 22038313 - 22038345
Alignment:
Q  84 aaaccataattatggtttaatggttttgatagt 116  Q
    ||||||||| |||||||||||||||||||||||    
T  22038313 aaaccataagtatggtttaatggttttgatagt 22038345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0065 (Bit Score: 83; Significance: 2e-39; HSPs: 6)
Name: scaffold0065
Description:

Target: scaffold0065; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 11 - 157
Target Start/End: Complemental strand, 555 - 409
Alignment:
Q  11 gtttttaatgaaattattattgttacatgattttaaataatgattaagatgttatacattgaaattattactgaaaccataattatggtttaatggtttt 110  Q
    ||||| ||| ||||||||||||  ||||| ||||||||||||||||| |||||||||| ||||||||||||||||||||||| |||||||| ||||||||    
T  555 gttttaaataaaattattattgggacatggttttaaataatgattaacatgttatacactgaaattattactgaaaccataagtatggtttcatggtttt 456  T
Q  111 gatagtcttctgtgagaaaccaaaataattgtctaatgattttgtaa 157  Q
    ||||||||    || ||||||||| ||||||||||||| ||||||||    
T  455 gatagtctctaatgtgaaaccaaagtaattgtctaatggttttgtaa 409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0065; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 145
Target Start/End: Complemental strand, 695 - 559
Alignment:
Q  1 ttgtgtaatagtttttaatgaaattattattgttacatgattttaaataatgattaagatgttatacattgaaattattactgaaaccataattatggtt 100  Q
    ||||||||| ||||| |||||||||||||||| |||||| |||||||||||||||||||||        ||||||||||||||||||||||| |||||||    
T  695 ttgtgtaatggttttaaatgaaattattattggtacatggttttaaataatgattaagatg-------ctgaaattattactgaaaccataagtatggtt 603  T
Q  101 taatggttttgatagtcttctgtgagaaaccaaaataattgtcta 145  Q
    |||| | ||||| |||||||  || ||||||||||||||| ||||    
T  602 taatag-tttgaaagtcttcaatgtgaaaccaaaataattatcta 559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0065; HSP #3
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 76 - 157
Target Start/End: Complemental strand, 102 - 21
Alignment:
Q  76 tattactgaaaccataattatggtttaatggttttgatagtcttctgtgagaaaccaaaataattgtctaatgattttgtaa 157  Q
    ||||||||||||||||| ||||||||||||||||||||||| |||| || ||||||||||||||||||||||| ||||||||    
T  102 tattactgaaaccataagtatggtttaatggttttgatagtgttctatgtgaaaccaaaataattgtctaatggttttgtaa 21  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0065; HSP #4
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 41 - 153
Target Start/End: Complemental strand, 793 - 681
Alignment:
Q  41 ttttaaataatgattaagatgttatacattgaaattattactgaaaccataattatggtttaatggttttgatagtcttctgtgagaaaccaaaataatt 140  Q
    |||||||||||||||||||||||||||| ||||||||||||||||| ||||| ||| |||||||| |||| |||||||| | ||  ||||||| ||||||    
T  793 ttttaaataatgattaagatgttatacactgaaattattactgaaatcataagtatcgtttaatgttttttatagtcttgtatgtcaaaccaagataatt 694  T
Q  141 gtctaatgatttt 153  Q
    || ||||| ||||    
T  693 gtgtaatggtttt 681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0065; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 77 - 153
Target Start/End: Complemental strand, 865 - 790
Alignment:
Q  77 attactgaaaccataattatggtttaatggttttgatagtcttctgtgagaaaccaaaataattgtctaatgatttt 153  Q
    |||||||||||||||| ||||||| |||||||||||||||||| | || |||||||| |||||||| ||||| ||||    
T  865 attactgaaaccataagtatggtt-aatggttttgatagtcttgtatgtgaaaccaagataattgtgtaatggtttt 790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0065; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 89 - 147
Target Start/End: Complemental strand, 220 - 162
Alignment:
Q  89 ataattatggtttaatggttttgatagtcttctgtgagaaaccaaaataattgtctaat 147  Q
    |||||| |||||||||||||||||||| ||| | || ||||  ||||||||||||||||    
T  220 ataattgtggtttaatggttttgatagacttgtatgtgaaagaaaaataattgtctaat 162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0019 (Bit Score: 78; Significance: 2e-36; HSPs: 3)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 44 - 157
Target Start/End: Complemental strand, 168627 - 168514
Alignment:
Q  44 taaataatgattaagatgttatacattgaaattattactgaaaccataattatggtttaatggttttgatagtcttctgtgagaaaccaaaataattgtc 143  Q
    |||||||||||||||||||||| || ||||||||||||||||||||||  ||||||||||||||||||||||| |||  || ||||||||||||||||||    
T  168627 taaataatgattaagatgttatgcactgaaattattactgaaaccatacgtatggtttaatggttttgatagttttcaatgtgaaaccaaaataattgtc 168528  T
Q  144 taatgattttgtaa 157  Q
    ||||| ||||||||    
T  168527 taatggttttgtaa 168514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0019; HSP #2
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 76 - 157
Target Start/End: Complemental strand, 168401 - 168320
Alignment:
Q  76 tattactgaaaccataattatggtttaatggttttgatagtcttctgtgagaaaccaaaataattgtctaatgattttgtaa 157  Q
    ||||||||||||||||| |||| |||||||||||||||||| |||| || ||||||||| ||||| ||||||| ||||||||    
T  168401 tattactgaaaccataagtatgatttaatggttttgatagtgttctatgtgaaaccaaactaattttctaatggttttgtaa 168320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0019; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 79 - 141
Target Start/End: Complemental strand, 168727 - 168665
Alignment:
Q  79 tactgaaaccataattatggtttaatggttttgatagtcttctgtgagaaaccaaaataattg 141  Q
    |||||||||||||| ||||||||||||||||||||||| || | ||  ||||||| |||||||    
T  168727 tactgaaaccataagtatggtttaatggttttgatagtgttgtatgtaaaaccaagataattg 168665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0104 (Bit Score: 77; Significance: 7e-36; HSPs: 5)
Name: scaffold0104
Description:

Target: scaffold0104; HSP #1
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 41 - 157
Target Start/End: Original strand, 39209 - 39325
Alignment:
Q  41 ttttaaataatgattaagatgttatacattgaaattattactgaaaccataattatggtttaatggttttgatagtcttctgtgagaaaccaaaataatt 140  Q
    ||||||||||||||||||||||||| || ||||||||||||||||||||||  ||||||||||||||||||||| | |||  || |||||||||||||||    
T  39209 ttttaaataatgattaagatgttatgcactgaaattattactgaaaccatacgtatggtttaatggttttgataattttcaatgtgaaaccaaaataatt 39308  T
Q  141 gtctaatgattttgtaa 157  Q
    |||||||| ||||||||    
T  39309 gtctaatggttttgtaa 39325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0104; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 76 - 157
Target Start/End: Original strand, 39473 - 39554
Alignment:
Q  76 tattactgaaaccataattatggtttaatggttttgatagtcttctgtgagaaaccaaaataattgtctaatgattttgtaa 157  Q
    ||||||||||||||||| ||||||||||| ||||||||||| |||| || ||||||||| ||||||||||||| ||||||||    
T  39473 tattactgaaaccataagtatggtttaatagttttgatagtgttctatgtgaaaccaaactaattgtctaatggttttgtaa 39554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0104; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 76 - 157
Target Start/End: Original strand, 39850 - 39931
Alignment:
Q  76 tattactgaaaccataattatggtttaatggttttgatagtcttctgtgagaaaccaaaataattgtctaatgattttgtaa 157  Q
    ||||||||||||||| |  |||||||||||||||||||  | |||| || ||||||||| ||||||||||||| ||||||||    
T  39850 tattactgaaaccatcaacatggtttaatggttttgattatgttctatgtgaaaccaaactaattgtctaatggttttgtaa 39931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0104; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 79 - 148
Target Start/End: Original strand, 39112 - 39181
Alignment:
Q  79 tactgaaaccataattatggtttaatggttttgatagtcttctgtgagaaaccaaaataattgtctaatg 148  Q
    |||||||||||||| |||||||||||| |||||||||| || | ||  ||||||| |||||||| |||||    
T  39112 tactgaaaccataagtatggtttaatgattttgatagtgttgtatgtaaaaccaagataattgtgtaatg 39181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0104; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 79 - 153
Target Start/End: Original strand, 38883 - 38957
Alignment:
Q  79 tactgaaaccataattatggtttaatggttttgatagtcttctgtgagaaaccaaaataattgtctaatgatttt 153  Q
    |||||||||| | | || |||||||||||||||||||| |||| || ||||| |||| ||||| |||||| ||||    
T  38883 tactgaaaccgtgagtaaggtttaatggttttgatagtgttctatgtgaaacaaaaagaattgcctaatggtttt 38957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0050 (Bit Score: 73; Significance: 2e-33; HSPs: 7)
Name: scaffold0050
Description:

Target: scaffold0050; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 41 - 157
Target Start/End: Original strand, 16194 - 16310
Alignment:
Q  41 ttttaaataatgattaagatgttatacattgaaattattactgaaaccataattatggtttaatggttttgatagtcttctgtgagaaaccaaaataatt 140  Q
    |||||||||||||||||||||||||||| ||||||||||||| |||| |||| ||||| ||||||||||||| |||||||  || |||||||||||||||    
T  16194 ttttaaataatgattaagatgttatacactgaaattattactaaaactataagtatggcttaatggttttgacagtcttcaatgtgaaaccaaaataatt 16293  T
Q  141 gtctaatgattttgtaa 157  Q
    || ||||| ||||||||    
T  16294 gtgtaatggttttgtaa 16310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0050; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 48 - 152
Target Start/End: Original strand, 22770 - 22874
Alignment:
Q  48 taatgattaagatgttatacattgaaattattactgaaaccataattatggtttaatggttttgatagtcttctgtgagaaaccaaaataattgtctaat 147  Q
    ||||||||  |||||||| || ||||||||||||||||||||||| |||||||||||| |||||||||| || | || ||||||||||||||||| ||||    
T  22770 taatgattttgatgttatccactgaaattattactgaaaccataagtatggtttaatgattttgatagtattgtatgtgaaaccaaaataattgtgtaat 22869  T
Q  148 gattt 152  Q
    |||||    
T  22870 gattt 22874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0050; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 62 - 138
Target Start/End: Original strand, 16106 - 16182
Alignment:
Q  62 ttatacattgaaattattactgaaaccataattatggtttaatggttttgatagtcttctgtgagaaaccaaaataa 138  Q
    ||||||| ||||||||||||||||||||||| ||||||||||||||||||||||| || | || |||||||||||||    
T  16106 ttatacactgaaattattactgaaaccataagtatggtttaatggttttgatagtattgtatgtgaaaccaaaataa 16182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0050; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 58 - 154
Target Start/End: Original strand, 22584 - 22680
Alignment:
Q  58 gatgttatacattgaaattattactgaaaccataattatggtttaatggttttgatagtcttctgtgagaaaccaaaataattgtctaatgattttg 154  Q
    ||||||||||| | ||||||||||||||||||||| ||||||||||||||||||||||| || | || |||||||| |||| ||| ||||| |||||    
T  22584 gatgttatacactaaaattattactgaaaccataagtatggtttaatggttttgatagtattgtatgtgaaaccaagataaatgtgtaatggttttg 22680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0050; HSP #5
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 58 - 154
Target Start/End: Original strand, 22680 - 22780
Alignment:
Q  58 gatgttatacattgaaattattactgaaaccataa----ttatggtttaatggttttgatagtcttctgtgagaaaccaaaataattgtctaatgatttt 153  Q
    ||||||||||| |||||||||||||||||||||||    |||||||||||||||||||||||| || | || |||||||| |||| ||| ||||||||||    
T  22680 gatgttatacactgaaattattactgaaaccataagtatttatggtttaatggttttgatagtattgtatgtgaaaccaagataaatgtgtaatgatttt 22779  T
Q  154 g 154  Q
    |    
T  22780 g 22780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0050; HSP #6
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 59 - 113
Target Start/End: Original strand, 22877 - 22931
Alignment:
Q  59 atgttatacattgaaattattactgaaaccataattatggtttaatggttttgat 113  Q
    |||||||||| ||||||||||||||||||||||| ||||||||||||||||||||    
T  22877 atgttatacactgaaattattactgaaaccataagtatggtttaatggttttgat 22931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0050; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 76 - 154
Target Start/End: Original strand, 16511 - 16589
Alignment:
Q  76 tattactgaaaccataattatggtttaatggttttgatagtcttctgtgagaaaccaaaataattgtctaatgattttg 154  Q
    ||||||||||||||||| ||||||||||||||||| ||||| ||   || |||||||| || ||||| ||||| |||||    
T  16511 tattactgaaaccataagtatggtttaatggttttaatagtattaaatgtgaaaccaagattattgtgtaatggttttg 16589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0558 (Bit Score: 69; Significance: 4e-31; HSPs: 4)
Name: scaffold0558
Description:

Target: scaffold0558; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 41 - 157
Target Start/End: Complemental strand, 10752 - 10636
Alignment:
Q  41 ttttaaataatgattaagatgttatacattgaaattattactgaaaccataattatggtttaatggttttgatagtcttctgtgagaaaccaaaataatt 140  Q
    ||||| ||||||||||||||||||| || ||||||||||||||||||||||  ||| ||||||||||||||||||| |||  || |||||||||||||||    
T  10752 ttttatataatgattaagatgttatgcactgaaattattactgaaaccatacgtatagtttaatggttttgatagttttcaatgtgaaaccaaaataatt 10653  T
Q  141 gtctaatgattttgtaa 157  Q
     ||||||| ||||||||    
T  10652 ttctaatggttttgtaa 10636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0558; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 76 - 157
Target Start/End: Complemental strand, 10513 - 10432
Alignment:
Q  76 tattactgaaaccataattatggtttaatggttttgatagtcttctgtgagaaaccaaaataattgtctaatgattttgtaa 157  Q
    ||||||||||||||||| |||||||||||||||||| |||| |||| || ||||||||| ||||||||||||| ||||||||    
T  10513 tattactgaaaccataagtatggtttaatggttttggtagtgttctatgtgaaaccaaactaattgtctaatggttttgtaa 10432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0558; HSP #3
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 76 - 157
Target Start/End: Complemental strand, 10136 - 10055
Alignment:
Q  76 tattactgaaaccataattatggtttaatggttttgatagtcttctgtgagaaaccaaaataattgtctaatgattttgtaa 157  Q
    ||||| ||||||||||| ||||||||||||||||||||||| |||| || ||||||||| | ||||||||||| ||||||||    
T  10136 tattattgaaaccataagtatggtttaatggttttgatagtgttctatgtgaaaccaaacttattgtctaatggttttgtaa 10055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0558; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 79 - 148
Target Start/End: Complemental strand, 10831 - 10762
Alignment:
Q  79 tactgaaaccataattatggtttaatggttttgatagtcttctgtgagaaaccaaaataattgtctaatg 148  Q
    |||||||||||||| ||||||||||||||||||||||| || | ||  ||||||| |||||||| |||||    
T  10831 tactgaaaccataagtatggtttaatggttttgatagtgttgtatgtaaaaccaagataattgtgtaatg 10762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0553 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold0553
Description:

Target: scaffold0553; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 76 - 157
Target Start/End: Complemental strand, 6450 - 6371
Alignment:
Q  76 tattactgaaaccataattatggtttaatggttttgatagtcttctgtgagaaaccaaaataattgtctaatgattttgtaa 157  Q
    ||||| ||||||||||| ||||||||||||||||||||||| |||| || ||||  ||||||||| ||||||| ||||||||    
T  6450 tattattgaaaccataagtatggtttaatggttttgatagtgttctatgtgaaa--aaaataattatctaatggttttgtaa 6371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0455 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 3)
Name: scaffold0455
Description:

Target: scaffold0455; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 76 - 148
Target Start/End: Complemental strand, 1228 - 1156
Alignment:
Q  76 tattactgaaaccataattatggtttaatggttttgatagtcttctgtgagaaaccaaaataattgtctaatg 148  Q
    |||||| |||||||||  ||||||||||||||||||||||| |||| || ||||||||| |||||||| ||||    
T  1228 tattacagaaaccatatgtatggtttaatggttttgatagtgttctatgtgaaaccaaactaattgtcaaatg 1156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0455; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 83 - 157
Target Start/End: Complemental strand, 1090 - 1016
Alignment:
Q  83 gaaaccataattatggtttaatggttttgatagtcttctgtgagaaaccaaaataattgtctaatgattttgtaa 157  Q
    |||||||||  |||||||||||||||||||  || |||| |  ||||||||| ||||||||||||| ||||||||    
T  1090 gaaaccatatgtatggtttaatggttttgacggtgttctatatgaaaccaaactaattgtctaatggttttgtaa 1016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0455; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 79 - 138
Target Start/End: Complemental strand, 1863 - 1804
Alignment:
Q  79 tactgaaaccataattatggtttaatggttttgatagtcttctgtgagaaaccaaaataa 138  Q
    |||||||||||||| |||||| |||||||||||||||| |||| ||  ||||||| ||||    
T  1863 tactgaaaccataagtatggtataatggttttgatagtgttctatgtaaaaccaatataa 1804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0534 (Bit Score: 35; Significance: 0.00000000008; HSPs: 2)
Name: scaffold0534
Description:

Target: scaffold0534; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 79 - 121
Target Start/End: Complemental strand, 5973 - 5931
Alignment:
Q  79 tactgaaaccataattatggtttaatggttttgatagtcttct 121  Q
    |||||||||||||| ||||||||||||||||||||||| ||||    
T  5973 tactgaaaccataagtatggtttaatggttttgatagtgttct 5931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0534; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 79 - 121
Target Start/End: Original strand, 8864 - 8906
Alignment:
Q  79 tactgaaaccataattatggtttaatggttttgatagtcttct 121  Q
    |||||||||||||| ||||||| ||||||||||||||| ||||    
T  8864 tactgaaaccataagtatggttgaatggttttgatagtgttct 8906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0023 (Bit Score: 35; Significance: 0.00000000008; HSPs: 3)
Name: scaffold0023
Description:

Target: scaffold0023; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 79 - 121
Target Start/End: Original strand, 126256 - 126298
Alignment:
Q  79 tactgaaaccataattatggtttaatggttttgatagtcttct 121  Q
    |||||||||||||| ||||||||||||||||||||||| ||||    
T  126256 tactgaaaccataagtatggtttaatggttttgatagtgttct 126298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0023; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 79 - 121
Target Start/End: Original strand, 126426 - 126468
Alignment:
Q  79 tactgaaaccataattatggtttaatggttttgatagtcttct 121  Q
    |||||||||||||| ||||||||||||||||||||||| ||||    
T  126426 tactgaaaccataaatatggtttaatggttttgatagtgttct 126468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0023; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 79 - 116
Target Start/End: Original strand, 128579 - 128616
Alignment:
Q  79 tactgaaaccataattatggtttaatggttttgatagt 116  Q
    |||||||||||||| |||||||||||||||||||||||    
T  128579 tactgaaaccataagtatggtttaatggttttgatagt 128616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0144 (Bit Score: 34; Significance: 0.0000000003; HSPs: 12)
Name: scaffold0144
Description:

Target: scaffold0144; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 79 - 116
Target Start/End: Complemental strand, 19758 - 19721
Alignment:
Q  79 tactgaaaccataattatggtttaatggttttgatagt 116  Q
    |||||||||||||| |||||||||||||||||||||||    
T  19758 tactgaaaccataagtatggtttaatggttttgatagt 19721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0144; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 79 - 116
Target Start/End: Complemental strand, 28872 - 28835
Alignment:
Q  79 tactgaaaccataattatggtttaatggttttgatagt 116  Q
    |||||||||||||| |||||||||||||||||||||||    
T  28872 tactgaaaccataagtatggtttaatggttttgatagt 28835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0144; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 79 - 116
Target Start/End: Complemental strand, 31018 - 30981
Alignment:
Q  79 tactgaaaccataattatggtttaatggttttgatagt 116  Q
    |||||||||||||| |||||||||||||||||||||||    
T  31018 tactgaaaccataagtatggtttaatggttttgatagt 30981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0144; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 79 - 116
Target Start/End: Original strand, 33393 - 33430
Alignment:
Q  79 tactgaaaccataattatggtttaatggttttgatagt 116  Q
    |||||||||||||| |||||||||||||||||||||||    
T  33393 tactgaaaccataagtatggtttaatggttttgatagt 33430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0144; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 79 - 116
Target Start/End: Original strand, 33903 - 33940
Alignment:
Q  79 tactgaaaccataattatggtttaatggttttgatagt 116  Q
    |||||||||||||| |||||||||||||||||||||||    
T  33903 tactgaaaccataagtatggtttaatggttttgatagt 33940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0144; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 79 - 116
Target Start/End: Original strand, 34073 - 34110
Alignment:
Q  79 tactgaaaccataattatggtttaatggttttgatagt 116  Q
    |||||||||||||| |||||||||||||||||||||||    
T  34073 tactgaaaccataagtatggtttaatggttttgatagt 34110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0144; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 79 - 112
Target Start/End: Complemental strand, 19418 - 19385
Alignment:
Q  79 tactgaaaccataattatggtttaatggttttga 112  Q
    |||||||||||||| |||||||||||||||||||    
T  19418 tactgaaaccataagtatggtttaatggttttga 19385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0144; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 79 - 116
Target Start/End: Complemental strand, 19588 - 19551
Alignment:
Q  79 tactgaaaccataattatggtttaatggttttgatagt 116  Q
    |||||||||||||| |||| ||||||||||||||||||    
T  19588 tactgaaaccataagtatgatttaatggttttgatagt 19551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0144; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 79 - 116
Target Start/End: Complemental strand, 28702 - 28665
Alignment:
Q  79 tactgaaaccataattatggtttaatggttttgatagt 116  Q
    |||||||||||||| |||||||||||| ||||||||||    
T  28702 tactgaaaccataagtatggtttaatgattttgatagt 28665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0144; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 79 - 116
Target Start/End: Original strand, 33563 - 33600
Alignment:
Q  79 tactgaaaccataattatggtttaatggttttgatagt 116  Q
    |||||||||||||| |||| ||||||||||||||||||    
T  33563 tactgaaaccataagtatgatttaatggttttgatagt 33600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0144; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 79 - 116
Target Start/End: Original strand, 34243 - 34280
Alignment:
Q  79 tactgaaaccataattatggtttaatggttttgatagt 116  Q
    |||||||||||||| | |||||||||||||||||||||    
T  34243 tactgaaaccataagtgtggtttaatggttttgatagt 34280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0144; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 79 - 112
Target Start/End: Original strand, 34583 - 34616
Alignment:
Q  79 tactgaaaccataattatggtttaatggttttga 112  Q
    |||||||||||||| |||||||||||||||||||    
T  34583 tactgaaaccataagtatggtttaatggttttga 34616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0581 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0581
Description:

Target: scaffold0581; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 79 - 116
Target Start/End: Complemental strand, 347 - 310
Alignment:
Q  79 tactgaaaccataattatggtttaatggttttgatagt 116  Q
    |||||||||||||| |||||| ||||||||||||||||    
T  347 tactgaaaccataagtatggtataatggttttgatagt 310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University