View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10164_low_2 (Length: 445)
Name: NF10164_low_2
Description: NF10164
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10164_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 255; Significance: 1e-142; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 150 - 428
Target Start/End: Original strand, 40064810 - 40065088
Alignment:
| Q |
150 |
ggaataagcatgcaatggatgaaagagacagcaacgccactcccaaccaatattaatgtttactatagtgataattatatttatcctccctatttgttat |
249 |
Q |
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| T |
40064810 |
ggaataagcatgcaatggatgaaagagacagcaacgccactcccaaccaatattaatgtttactatagtgataattatacttatcctccctatttgttat |
40064909 |
T |
|
| Q |
250 |
aaaatctgtagcaccgacacttctgatcaaagacgtgtctggcatgtgtccatgtcatgtctatcacggacattgacacatgtgattacttcaattatgc |
349 |
Q |
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||||| ||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40064910 |
aaaatgagtagcactgacacttctgatcaaagacgtgtctgacatgtgtccatgtcatgtctatcacggacattgacacatgtgattacttcaattatgc |
40065009 |
T |
|
| Q |
350 |
aattttttaaaattataaccggtgtccatgtgagggtgttgtgtccggtgtctgagcttcataggtcagatgaaaaaac |
428 |
Q |
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| T |
40065010 |
aattttttaaaattataaccggtgtcgatgtgagggtgttgtgtccggtgtctgagcttcataggtcagatgaaaaaac |
40065088 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 111; E-Value: 7e-56
Query Start/End: Original strand, 14 - 124
Target Start/End: Original strand, 40064670 - 40064780
Alignment:
| Q |
14 |
caaaggcaatgcaagtttaagttaaagagcaacatcaaatatcaacatttcttgtcccactcaaggaaaagtaacaactctagccaacaaccaacaacat |
113 |
Q |
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| T |
40064670 |
caaaggcaatgcaagtttaagttaaagagcaacatcaaatatcaacatttcttgtcccactcaaggaaaagtaacaactctagccaacaaccaacaacat |
40064769 |
T |
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| Q |
114 |
actaacatcgc |
124 |
Q |
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| T |
40064770 |
actaacatcgc |
40064780 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 256 - 291
Target Start/End: Complemental strand, 4785083 - 4785048
Alignment:
| Q |
256 |
tgtagcaccgacacttctgatcaaagacgtgtctgg |
291 |
Q |
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| T |
4785083 |
tgtagcaccgacacttctgatcgaagacgtgtctgg |
4785048 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 254 - 288
Target Start/End: Complemental strand, 18263602 - 18263568
Alignment:
| Q |
254 |
tctgtagcaccgacacttctgatcaaagacgtgtc |
288 |
Q |
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| T |
18263602 |
tctgtagcaccgacacttctgatcgaagacgtgtc |
18263568 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 256 - 286
Target Start/End: Complemental strand, 41427767 - 41427737
Alignment:
| Q |
256 |
tgtagcaccgacacttctgatcaaagacgtg |
286 |
Q |
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| T |
41427767 |
tgtagcaccgacacttctgatcaaagacgtg |
41427737 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 256 - 289
Target Start/End: Complemental strand, 7894796 - 7894763
Alignment:
| Q |
256 |
tgtagcaccgacacttctgatcaaagacgtgtct |
289 |
Q |
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||||||||||||||||||||| |||||||||||| |
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| T |
7894796 |
tgtagcaccgacacttctgatgaaagacgtgtct |
7894763 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 256 - 288
Target Start/End: Original strand, 8100294 - 8100326
Alignment:
| Q |
256 |
tgtagcaccgacacttctgatcaaagacgtgtc |
288 |
Q |
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|||||||||||||||||||||| |||||||||| |
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| T |
8100294 |
tgtagcaccgacacttctgatcgaagacgtgtc |
8100326 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 258 - 291
Target Start/End: Complemental strand, 21030802 - 21030769
Alignment:
| Q |
258 |
tagcaccgacacttctgatcaaagacgtgtctgg |
291 |
Q |
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|||||||||||||||| ||||||||||||||||| |
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| T |
21030802 |
tagcaccgacacttcttatcaaagacgtgtctgg |
21030769 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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