View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10164_low_20 (Length: 239)
Name: NF10164_low_20
Description: NF10164
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10164_low_20 |
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Alignment Details
Target: chr1 (Bit Score: 210; Significance: 1e-115; HSPs: 10)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 32895643 - 32895864
Alignment:
| Q |
1 |
ctgttttcacaatgatagcagaacatgataatccttcagcatggattataggactcaacattgacttgtggtccacaatatatggggttaagtgtcatag |
100 |
Q |
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| T |
32895643 |
ctgttttcacaatgatagcagaacatgataatccttcggcatggattataggattcaacattgacttgtggtccacaatatatggggttaagtgtcatag |
32895742 |
T |
|
| Q |
101 |
caactacaatgaatttataaaaatgtactgccaaatcttaaaattctaacattatatatcaaatgacagggaattgttgttggtggtttgttgatataca |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32895743 |
caactacaatgaatttataaaaatgtactgccaaatcttaaaattctaacattatatatcaaatgacagggaattgttgttggtggtttgttgatataca |
32895842 |
T |
|
| Q |
201 |
ttctactatggtgcactgagaa |
222 |
Q |
| |
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||||||||||| |||||||||| |
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| T |
32895843 |
ttctactatggagcactgagaa |
32895864 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 32952672 - 32952902
Alignment:
| Q |
1 |
ctgttttcacaatgatagcagaacatgataatccttcagcatggattataggactcaacattgacttgtggtccacaatatatggggttaagtgtcatag |
100 |
Q |
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||||||||||| | |||||||||| | |||| ||||||||||||||||||||| ||||||||||||||||||||| | ||||||||||||||| ||||| |
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| T |
32952672 |
ctgttttcacagtaatagcagaacgtaataacccttcagcatggattataggattcaacattgacttgtggtccatattatatggggttaagtatcataa |
32952771 |
T |
|
| Q |
101 |
caactacaatgaatttataaaaatgtactgccaaatcttaaaattctaacattatatatca---------aatgacagggaattgttgttggtggtttgt |
191 |
Q |
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||| ||||||||||||||| ||| | || ||||||||||| |||||||||||| ||||| ||||||||||||||||||||| ||| || | |
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| T |
32952772 |
caaatacaatgaatttatataaaatttctctcaaatcttaaagttctaacattatgtatcaatcatcatcaatgacagggaattgttgttgctggatttt |
32952871 |
T |
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| Q |
192 |
tgatatacattctactatggtgcactgagaa |
222 |
Q |
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||| |||||||||||||||||||||||||| |
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| T |
32952872 |
tgacgtacattctactatggtgcactgagaa |
32952902 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 1 - 111
Target Start/End: Original strand, 32935290 - 32935400
Alignment:
| Q |
1 |
ctgttttcacaatgatagcagaacatgataatccttcagcatggattataggactcaacattgacttgtggtccacaatatatggggttaagtgtcatag |
100 |
Q |
| |
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||||||||||||| |||| |||||||||||| ||||||||||||||||||||| ||||||||||||||||||||| | ||||||||||||||| || ||| |
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| T |
32935290 |
ctgttttcacaataatagtagaacatgataacccttcagcatggattataggattcaacattgacttgtggtccatattatatggggttaagtatcttag |
32935389 |
T |
|
| Q |
101 |
caactacaatg |
111 |
Q |
| |
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||| ||||||| |
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| T |
32935390 |
caagtacaatg |
32935400 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 4 - 222
Target Start/End: Original strand, 32919039 - 32919264
Alignment:
| Q |
4 |
ttttcacaatgatagcagaacatgataatccttcagcatggattataggactcaacattgacttgtggtccacaatatatggggttaagtgtcatagcaa |
103 |
Q |
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|||||||||| |||| ||||||| |||| ||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||| ||| | || | |
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| T |
32919039 |
ttttcacaataatagtagaacataataacccttcagcatggattataggattcaacattgacttgtggtccataatatatggggtt-agtataatgaata |
32919137 |
T |
|
| Q |
104 |
ctacaatgaatttataaaaatgtactgccaaatcttaaaattctaacattatatatca---------aatgacagggaattgttgttggtggtttgttga |
194 |
Q |
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| | || ||| ||||| ||||| ||||||| |||| ||||||||||||| |||| ||||| |||||||||||| |||||||||||||| |
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| T |
32919138 |
attc-atatctttctaaaacagtactaccaaatcataaagttctaacattatacatcaatcattatcaatgatagggaattgttgctggtggtttgttga |
32919236 |
T |
|
| Q |
195 |
tatacattctactatggtgcactgagaa |
222 |
Q |
| |
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| ||||||| |||||||||||||||||| |
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| T |
32919237 |
tctacattcaactatggtgcactgagaa |
32919264 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 4 - 90
Target Start/End: Complemental strand, 19504091 - 19504005
Alignment:
| Q |
4 |
ttttcacaatgatagcagaacatgataatccttcagcatggattataggactcaacattgacttgtggtccacaatatatggggtta |
90 |
Q |
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|||||||| |||||||||||||| |||| |||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||| |
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| T |
19504091 |
ttttcacagtgatagcagaacataataacccttcagcatggattatagggctcaatattgacttgtggtccacaatatatggggtta |
19504005 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 1 - 93
Target Start/End: Original strand, 32884929 - 32885021
Alignment:
| Q |
1 |
ctgttttcacaatgatagcagaacatgataatccttcagcatggattataggactcaacattgacttgtggtccacaatatatggggttaagt |
93 |
Q |
| |
|
||||||||||| | |||| ||||||| |||| ||||||| |||||||||||||||||||||||||||||||||| ||||||||| ||||||| |
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| T |
32884929 |
ctgttttcacattaatagtagaacataataacacttcagcttggattataggactcaacattgacttgtggtccataatatatggagttaagt |
32885021 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 4 - 90
Target Start/End: Original strand, 32882063 - 32882149
Alignment:
| Q |
4 |
ttttcacaatgatagcagaacatgataatccttcagcatggattataggactcaacattgacttgtggtccacaatatatggggtta |
90 |
Q |
| |
|
|||||||| | |||| |||||| |||| ||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||| |
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| T |
32882063 |
ttttcacagtaatagtagaacaaaataacccttcagcatggattataggactcaacattgacttgtggtccataatatattgggtta |
32882149 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 166 - 222
Target Start/End: Original strand, 32885105 - 32885161
Alignment:
| Q |
166 |
acagggaattgttgttggtggtttgttgatatacattctactatggtgcactgagaa |
222 |
Q |
| |
|
|||||||||||||| ||||||||| ||||| ||||||| | |||||||||||||||| |
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|
| T |
32885105 |
acagggaattgttggtggtggtttattgatctacattcaattatggtgcactgagaa |
32885161 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 163 - 222
Target Start/End: Complemental strand, 19503916 - 19503857
Alignment:
| Q |
163 |
atgacagggaattgttgttggtggtttgttgatatacattctactatggtgcactgagaa |
222 |
Q |
| |
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|||||||||||||||||| |||||||||||| |||| || |||||||||||| ||||| |
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| T |
19503916 |
atgacagggaattgttgtgagtggtttgttgacgtacactcaactatggtgcaccgagaa |
19503857 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 162 - 222
Target Start/End: Original strand, 32935460 - 32935520
Alignment:
| Q |
162 |
aatgacagggaattgttgttggtggtttgttgatatacattctactatggtgcactgagaa |
222 |
Q |
| |
|
||||| |||| ||| |||||| ||||||||||| ||||||| ||| |||||||||||||| |
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| T |
32935460 |
aatgataggggatttttgttgctggtttgttgacgtacattcaactgtggtgcactgagaa |
32935520 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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