View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10164_low_24 (Length: 227)
Name: NF10164_low_24
Description: NF10164
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10164_low_24 |
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Alignment Details
Target: chr3 (Bit Score: 144; Significance: 7e-76; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 144; E-Value: 7e-76
Query Start/End: Original strand, 1 - 226
Target Start/End: Original strand, 1139569 - 1139808
Alignment:
| Q |
1 |
attgtcgataaagttatatattattgcatcaatgcaaggttaggtttaattatttgtgatatgaataaaatcatcttaaaattcaaaagagaatcccaaa |
100 |
Q |
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| T |
1139569 |
attgtcgataaatttatatattattgcatcaatgcaaggttaggtttaattatttgtgatatgaataaaataatcttaaaattcaaaagaaaatctcaaa |
1139668 |
T |
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| Q |
101 |
tgacaatgaagattcataccaattttgaaattgttaatcgtatat-----------atataattga---agaatatataacagaacattaaactacaaaa |
186 |
Q |
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| T |
1139669 |
tgacaatgaagattcatatcaattttgaaattgttaatcgtatataattgaagaaaatataacagaaagagaaaaaaaaacagatcattaaactacaaaa |
1139768 |
T |
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| Q |
187 |
agataaatagaaccacaataatttgtgaaaagaaactaat |
226 |
Q |
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| T |
1139769 |
agataaatagaaccacaataatttgtgaaaagaaactaat |
1139808 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 51 - 94
Target Start/End: Original strand, 32617991 - 32618034
Alignment:
| Q |
51 |
tatttgtgatatgaataaaatcatcttaaaattcaaaagagaat |
94 |
Q |
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|||||||||| | |||| |||||||||||||||||||||||||| |
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| T |
32617991 |
tatttgtgatctaaatataatcatcttaaaattcaaaagagaat |
32618034 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 54 - 94
Target Start/End: Complemental strand, 14604920 - 14604880
Alignment:
| Q |
54 |
ttgtgatatgaataaaatcatcttaaaattcaaaagagaat |
94 |
Q |
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| T |
14604920 |
ttgtgatctaaatataatcatcttaaaattcaaaagagaat |
14604880 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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