View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10164_low_9 (Length: 329)
Name: NF10164_low_9
Description: NF10164
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10164_low_9 |
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Alignment Details
Target: chr8 (Bit Score: 300; Significance: 1e-169; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 300; E-Value: 1e-169
Query Start/End: Original strand, 18 - 321
Target Start/End: Complemental strand, 42013199 - 42012896
Alignment:
| Q |
18 |
gttgcactcagggatgcttctcaacgtctctttaggttgatattcagatagacaaattgaacaagtattgtcattggccttcaataaacgtccactctcc |
117 |
Q |
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| T |
42013199 |
gttgcactcagggatgcttctcaacgtctctttaggttgatattcagatagacaaattgaacaagtattgtcattggccttcaataaacgtccactctcc |
42013100 |
T |
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| Q |
118 |
ccaataagagtcttggggtacttttcaattgtggcaccatcaagacccattgcaaaagaagggagaggttctaaggaaattgttattgtaggaagatttg |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42013099 |
ccaataagagtcttggggtacttttcaattgtggcaccatcaagacccattgcaaaagaagggagaggttctaaggaaattgttattgtaggaagatttg |
42013000 |
T |
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| Q |
218 |
aggtcctttgttcataaagtggtaccgttctcctcatcttaccacatatactgtaacataagccaatcagacacaaaagtcctggtattcccactccctt |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
42012999 |
aggtcctttgttcataaagtggtaccgttctcctcatcttaccacatatactgtaacataagccaatcagacacaaaagtcctggtattcccactcccat |
42012900 |
T |
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| Q |
318 |
tgct |
321 |
Q |
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|||| |
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| T |
42012899 |
tgct |
42012896 |
T |
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