View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10165_high_1 (Length: 587)
Name: NF10165_high_1
Description: NF10165
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10165_high_1 |
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Alignment Details
Target: chr8 (Bit Score: 521; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 521; E-Value: 0
Query Start/End: Original strand, 18 - 570
Target Start/End: Complemental strand, 31455544 - 31454992
Alignment:
| Q |
18 |
ttatgttcattctctgaagaaaacaatcttgttggattaagcttcgagatcaacgatgatccttttgttgttcgaagtcttggcgttgatatgaatagta |
117 |
Q |
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| T |
31455544 |
ttatgttcattctctgaagaaaacaatcttgttggattaagcttcgagatcaacgatgatccttttgttgttcgaagtcttggcgttgatatgaatagta |
31455445 |
T |
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| Q |
118 |
aaagagaacgaaatatagatattgtgatggtggtagcttctcttaaaaccttagccaaaaatattaaattttgatcttgtcccataatagaaaaaagctt |
217 |
Q |
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| T |
31455444 |
aaagagaacgaaatatagatattgtgatggtggtagcttctcttaaaaccttagccaaaaatattaaattttgatcttggcccataatagaaaaaagctt |
31455345 |
T |
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| Q |
218 |
tactttgttttccattttcttcatttcactaagttgcttagaaatttccttctttgccttctttctaaagcaatcatactcatatatgctgctttcaatg |
317 |
Q |
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| T |
31455344 |
tactttgttttccattttcttcatttcaccaagttgctttgaaatttccttctttgccttctttctaaagcaatcatactcatatatgctgctttcaatg |
31455245 |
T |
|
| Q |
318 |
cttgaagttgaatttcctcgtcttctacgtatagcggattgaagtgtttccacatgttccttgagattcaagagtaattcccttgatgaactacatgcat |
417 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
31455244 |
cttgaagttgaatttcctcgtcttctacgtatagccgattgaagtgtttccacatgttccttgagattcaagagtaattcccttgatgaaccacatgcat |
31455145 |
T |
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| Q |
418 |
ctaaaagtgtaactgaaccacttaatgaatcttccactagcttcccattttgatagtgtaaaagtgcttgttgtgtttgttgagattggaagagttcttc |
517 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31455144 |
ctaaaagtgtaactgaaccacttaatgaatcttccactagcttcccattttgatagtgtaaaagtgcttgttgtgtttgttgagattggaagagttcttc |
31455045 |
T |
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| Q |
518 |
catgcaattgtatagctctgcaagcacaactaaatcactttgaattgtctctg |
570 |
Q |
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| T |
31455044 |
catgcaattgtataactcagcaagcacaaccaaatcactttgaattgtctctg |
31454992 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 485 - 574
Target Start/End: Original strand, 9385376 - 9385465
Alignment:
| Q |
485 |
ttgttgtgtttgttgagattggaagagttcttccatgcaattgtatagctctgcaagcacaactaaatcactttgaattgtctctgcttc |
574 |
Q |
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|||||| |||||| |||| | ||||||||||||||| |||||||| | |||||||||| | ||||| ||||| |||||| |||||||||| |
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| T |
9385376 |
ttgttgagtttgtggagagttgaagagttcttccatacaattgtaaatctctgcaagccctactaagtcactctgaattttctctgcttc |
9385465 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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