View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10165_high_10 (Length: 252)
Name: NF10165_high_10
Description: NF10165
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10165_high_10 |
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| [»] scaffold0363 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 228; Significance: 1e-126; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 1 - 244
Target Start/End: Complemental strand, 22176379 - 22176136
Alignment:
| Q |
1 |
tcaggttcccaacacttgggtctacgttttcaccgttcggattgtcgaaacaaagtctgagtcaagagaaaactgtctcgcactgaagcagtatatttgg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22176379 |
tcaggttcccaacacttgggtctacgttttcaccgttcggatcgtcgaaacaaagtctgagtcaagagaaaactgtctcgcactgaagcagtatatttgg |
22176280 |
T |
|
| Q |
101 |
ggttccggcaatcaacacccagtgcaattgagtttccggcgtttgggcttttcacggcatagggttttcacgacacagtgcaggtattcttggttttcat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
22176279 |
ggttccggcaatcaacacccagtgcaattgagtttccggcgtttgggcttttcacggcatagggatttcacgacacagtgcaggtattcttggttttcat |
22176180 |
T |
|
| Q |
201 |
atttgcattgtgttccctttgttgtgttgcggtttctctctgct |
244 |
Q |
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|||||||||||||||||| || |||||||||||||||||||||| |
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| T |
22176179 |
atttgcattgtgttccctctgctgtgttgcggtttctctctgct |
22176136 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0363 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: scaffold0363
Description:
Target: scaffold0363; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 1 - 244
Target Start/End: Complemental strand, 8068 - 7826
Alignment:
| Q |
1 |
tcaggttcccaacacttgggtctacgttttcaccgttcggattgtcgaaacaaagtctgagtcaagagaaaactgtctcgcactgaagcagtatatttgg |
100 |
Q |
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|||||||| |||||| |||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8068 |
tcaggttcgcaacacctgggtctacgttttcaccgttcggatcgtcgaaacaaggtctgagtcaagagaaaactgtctcgcactgaagcagtatatttgg |
7969 |
T |
|
| Q |
101 |
ggttccggcaatcaacacccagtgcaattgagtttccggcgtttgggcttttcacggcatagggttttcacgacacagtgcaggtattcttggttttcat |
200 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||| ||| |
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| T |
7968 |
ggttccggcaatcaacacccagtgcaattgagttt-cggcgtttgggcttttcacggcataggattttcacgacacagtgcaggtattcttgttttccat |
7870 |
T |
|
| Q |
201 |
atttgcattgtgttccctttgttgtgttgcggtttctctctgct |
244 |
Q |
| |
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|||||||||||||| ||| || |||||| ||||||||||||||| |
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| T |
7869 |
atttgcattgtgtttcctctgctgtgtttcggtttctctctgct |
7826 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 192; Significance: 1e-104; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 1 - 244
Target Start/End: Original strand, 14410643 - 14410885
Alignment:
| Q |
1 |
tcaggttcccaacacttgggtctacgttttcaccgttcggattgtcgaaacaaagtctgagtcaagagaaaactgtctcgcactgaagcagtatatttgg |
100 |
Q |
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|||||||| |||||| |||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14410643 |
tcaggttcgcaacacctgggtctacgttttcaccgttcggatcgtcgaaacaaggtctgagtcaagagaaaactgtctcgcactgaagcagtatatttgg |
14410742 |
T |
|
| Q |
101 |
ggttccggcaatcaacacccagtgcaattgagtttccggcgtttgggcttttcacggcatagggttttcacgacacagtgcaggtattcttggttttcat |
200 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||| ||| |
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| T |
14410743 |
ggttccggcaatcaacacccagtgcaattgagttt-cggcgtttgggcttttcacggcataggattttcacgacacagtgcaggtattcttgttttccat |
14410841 |
T |
|
| Q |
201 |
atttgcattgtgttccctttgttgtgttgcggtttctctctgct |
244 |
Q |
| |
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|||||||||||||| ||| || |||||| ||||||||||||||| |
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| T |
14410842 |
atttgcattgtgtttcctctgctgtgtttcggtttctctctgct |
14410885 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 17 - 244
Target Start/End: Original strand, 21590474 - 21590697
Alignment:
| Q |
17 |
tgggtctacgttttcaccgttcggattgtcgaaacaaagtctgagtcaagagaaaactgtctcgcactgaagcagtatatttggggttccggcaatcaac |
116 |
Q |
| |
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|||||||||||||||||||||||||| |||||||||| |||||||| |||||||| |||||||||||||||||||||||||||||||||| |||||||| |
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| T |
21590474 |
tgggtctacgttttcaccgttcggatcgtcgaaacaaggtctgagttgagagaaaattgtctcgcactgaagcagtatatttggggttccgacaatcaac |
21590573 |
T |
|
| Q |
117 |
acccagtgcaattgagtttccggcgtttgggcttttcacggcatagggttttcacgacacagtgcaggtattcttggttttcatatttgcattgtgttcc |
216 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21590574 |
acccagtgcaattgagtttccggcgtttgggtttttcacggcatagggttttcacgacacagtgcaggtattcttggttttcatatttgcattgtgttcc |
21590673 |
T |
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| Q |
217 |
ctttgttgtgttgcggtttctctctgct |
244 |
Q |
| |
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| T |
21590674 |
c----ttgtgttgcggtttctctctgct |
21590697 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 20 - 242
Target Start/End: Original strand, 23599227 - 23599449
Alignment:
| Q |
20 |
gtctacgttttcaccgttcggattgtcgaaacaaagtctgagtcaagagaaaactgtctcgcactgaagcagtatatttggggttccggcaatcaacacc |
119 |
Q |
| |
|
||||| ||||| || |||||||| |||||||||| |||||||||||||||||| |||| | |||| |||||||||||||||||||||||||||||||||| |
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| T |
23599227 |
gtctatgtttttactgttcggatcgtcgaaacaaggtctgagtcaagagaaaattgtcgctcactaaagcagtatatttggggttccggcaatcaacacc |
23599326 |
T |
|
| Q |
120 |
cagtgcaattgagtttccggcgtttgggcttttcacggcatagggttttcacgacacagtgcaggtattcttggttttcatatttgcattgtgttccctt |
219 |
Q |
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|| ||||||||||||| ||||||| |||||||||||| |||||| ||||| |||| ||||| ||||||| ||||||||||||||||||||| |||||| |
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| T |
23599327 |
caatgcaattgagttttcggcgttagggcttttcacgacataggtctttcatgacatagtgctggtattcctggttttcatatttgcattgtattccctc |
23599426 |
T |
|
| Q |
220 |
tgttgtgttgcggtttctctctg |
242 |
Q |
| |
|
|| ||||| ||||||||||||| |
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| T |
23599427 |
tgctgtgtcacggtttctctctg |
23599449 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 188; Significance: 1e-102; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 1 - 228
Target Start/End: Original strand, 17180709 - 17180936
Alignment:
| Q |
1 |
tcaggttcccaacacttgggtctacgttttcaccgttcggattgtcgaaacaaagtctgagtcaagagaaaactgtctcgcactgaagcagtatatttgg |
100 |
Q |
| |
|
|||||||| |||||| |||||||||||||||||||||||||| |||||||||| |||||| ||||||||||| ||||||||||||||||||||||||||| |
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| T |
17180709 |
tcaggttcgcaacacctgggtctacgttttcaccgttcggatcgtcgaaacaaggtctgactcaagagaaaattgtctcgcactgaagcagtatatttgg |
17180808 |
T |
|
| Q |
101 |
ggttccggcaatcaacacccagtgcaattgagtttccggcgtttgggcttttcacggcatagggttttcacgacacagtgcaggtattcttggttttcat |
200 |
Q |
| |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
17180809 |
ggttcctgcaatcaacacccagtgcaattgagtttccggcgtttgggcttttcacggcatacggttttcacgacacagtgcaggtattcttggttttcat |
17180908 |
T |
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| Q |
201 |
atttgcattgtgttccctttgttgtgtt |
228 |
Q |
| |
|
|||||||||||||||||| || |||||| |
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| T |
17180909 |
atttgcattgtgttccctctgctgtgtt |
17180936 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 88
Target Start/End: Original strand, 36386549 - 36386635
Alignment:
| Q |
2 |
caggttcccaacacttgggtctacgttttcaccgttcggattgtcgaaacaaagtctgagtcaagagaaaactgtctcgcactgaag |
88 |
Q |
| |
|
||||||| ||||| | | |||||| ||||||| ||| |||| ||||||||| |||||||| |||||||| |||||||||||||| |
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| T |
36386549 |
caggttcacaacattggtgtctaccttttcactgtttggatcttcgaaacaaggtctgagttaagagaaattcgtctcgcactgaag |
36386635 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 52; Significance: 6e-21; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 2 - 101
Target Start/End: Complemental strand, 10698328 - 10698229
Alignment:
| Q |
2 |
caggttcccaacacttgggtctacgttttcaccgttcggattgtcgaaacaaagtctgagtcaagagaaaactgtctcgcactgaagcagtatatttggg |
101 |
Q |
| |
|
||||||| |||||| ||||||||| ||||||||||| ||||||||||||||| |||||||| ||||||| | | | |||||||||||||||| |||||| |
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| T |
10698328 |
caggttcacaacacctgggtctaccttttcaccgtttggattgtcgaaacaaggtctgagttgagagaaatcggccacgcactgaagcagtatttttggg |
10698229 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 2 - 101
Target Start/End: Complemental strand, 10912095 - 10911996
Alignment:
| Q |
2 |
caggttcccaacacttgggtctacgttttcaccgttcggattgtcgaaacaaagtctgagtcaagagaaaactgtctcgcactgaagcagtatatttggg |
101 |
Q |
| |
|
||||||| |||||| ||||||||| ||||||||||| ||||||||||||||| |||||||| ||||||| | | | |||||||||||||||| |||||| |
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| T |
10912095 |
caggttcacaacacctgggtctaccttttcaccgtttggattgtcgaaacaaggtctgagttgagagaaatcggccacgcactgaagcagtatttttggg |
10911996 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 2 - 101
Target Start/End: Original strand, 10673830 - 10673929
Alignment:
| Q |
2 |
caggttcccaacacttgggtctacgttttcaccgttcggattgtcgaaacaaagtctgagtcaagagaaaactgtctcgcactgaagcagtatatttggg |
101 |
Q |
| |
|
||||||| ||||| ||||||||| |||| ||||| |||| |||||||||| |||||||| ||| ||| | | | |||||||||||||||| |||||| |
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| T |
10673830 |
caggttcacaacatctgggtctaccttttgaccgtctggatcgtcgaaacaaggtctgagttgagaaaaatcggccacgcactgaagcagtatttttggg |
10673929 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 2 - 101
Target Start/End: Original strand, 10887470 - 10887569
Alignment:
| Q |
2 |
caggttcccaacacttgggtctacgttttcaccgttcggattgtcgaaacaaagtctgagtcaagagaaaactgtctcgcactgaagcagtatatttggg |
101 |
Q |
| |
|
||||||| ||||| ||||||||| |||| ||||| |||| |||||||||| |||||||| ||| ||| | | | |||||||||||||||| |||||| |
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| T |
10887470 |
caggttcacaacatctgggtctaccttttgaccgtctggatcgtcgaaacaaggtctgagttgagaaaaatcggccacgcactgaagcagtatttttggg |
10887569 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 2 - 93
Target Start/End: Complemental strand, 18706394 - 18706303
Alignment:
| Q |
2 |
caggttcccaacacttgggtctacgttttcaccgttcggattgtcgaaacaaagtctgagtcaagagaaaactgtctcgcactgaagcagta |
93 |
Q |
| |
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||||||| ||||| ||| | ||| |||||||||||||||| |||||||| | ||||||| ||||||| |||||||||||||||||||| |
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| T |
18706394 |
caggttcgcaacatctggttttaccttttcaccgttcggatcgtcgaaaccaggtctgagatgagagaaagttgtctcgcactgaagcagta |
18706303 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 11 - 71
Target Start/End: Original strand, 32008931 - 32008991
Alignment:
| Q |
11 |
aacacttgggtctacgttttcaccgttcggattgtcgaaacaaagtctgagtcaagagaaa |
71 |
Q |
| |
|
||||| ||||||||| ||||||||||| |||| |||||||||| || ||||| |||||||| |
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|
| T |
32008931 |
aacacctgggtctaccttttcaccgtttggatcgtcgaaacaaggtttgagttaagagaaa |
32008991 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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