View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10165_high_2 (Length: 482)
Name: NF10165_high_2
Description: NF10165
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10165_high_2 |
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Alignment Details
Target: chr5 (Bit Score: 371; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 371; E-Value: 0
Query Start/End: Original strand, 2 - 476
Target Start/End: Complemental strand, 3570693 - 3570237
Alignment:
| Q |
2 |
ttggttggtccaaaataatattacgacactaaacaattactactacagtatatatttgtacagtattgaaatgaatcaatgtcaaaactcaaacccatta |
101 |
Q |
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| T |
3570693 |
ttggttggtccaaaataatattacgacactaaacaattactactacagtatatatttgtacagtattgaaatgtatcaatgtcaaaactcaaacccatta |
3570594 |
T |
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| Q |
102 |
ttataatggtaatctaatataaacccacgagcctggcccaccaaccgaccatatgctaaggaatgcggatgagatacttctccttatacaatgtcnnnnn |
201 |
Q |
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| T |
3570593 |
ttataatggtaatctaatataaacccacgagcctggcccaccaaccgaccatatgctaaggaatgcggatgagatacttctccttatacaatgtcttttt |
3570494 |
T |
|
| Q |
202 |
nncttaacaaaaaggggctcaagcctag---actccaacagagacataaaactgaatagtttacgtataattaaattttccattgatgttcaaaataaag |
298 |
Q |
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| T |
3570493 |
ttcttaacaaaaaggggctcaagcctagagtactccaacagagacataaaactgaatagtttacgtataattaaattttccattgatgttcaaaataaag |
3570394 |
T |
|
| Q |
299 |
atcattatatttagtctgaaaattttagtgcagaccggttttatttatggacccccaactgttataccatttatagcatgctttctgtttttagttagaa |
398 |
Q |
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| T |
3570393 |
atcattatatttagtctgaaaattttagtgcagaccggttttatttatggacccccaactgttataccatttatagcatgctttctgtttttagttag-- |
3570296 |
T |
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| Q |
399 |
ctttatgctgactcattgtaattctggctgttaccacagctagagaatgtgaaccattcaaatggatgcctatgcttc |
476 |
Q |
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| T |
3570295 |
-------------------aattctggctgttaccacagctagagaatgtgaaccattcaaatggatgcctatgcttc |
3570237 |
T |
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