View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10165_low_17 (Length: 246)

Name: NF10165_low_17
Description: NF10165
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10165_low_17
NF10165_low_17
[»] chr7 (1 HSPs)
chr7 (1-239)||(43461288-43461526)
[»] chr1 (3 HSPs)
chr1 (29-214)||(40292358-40292543)
chr1 (29-220)||(40285085-40285276)
chr1 (30-118)||(40266355-40266443)
[»] chr2 (1 HSPs)
chr2 (133-239)||(7076413-7076519)


Alignment Details
Target: chr7 (Bit Score: 203; Significance: 1e-111; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 43461526 - 43461288
Alignment:
Q  1 ccaacttcattgtaaagccttgactgtgctttcgtcaactagtacaccacttaaactactaatctcgcacttgattggggtttcagaagcaacatcgcta 100  Q
    ||||||||||| |||| |||| ||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||  |    
T  43461526 ccaacttcattttaaatcctttactgttctttcgtcaactattacaccacttaaactactaatctcgcacttgattggggtttcagaagcaacttcgtca 43461427  T
Q  101 gaaattgaaacaaccaagggtaatttgtccgcatccaacagttgtgctaaaaagtgaaaaatcccaagcgtcgtcagaaaccacagcatcccaaattgca 200  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43461426 gaaattgaaacaaccaagggtaatttttccgcatccaacagttgtgctaaaaagtgaaaaatcccaagcgtcgtcagaaaccacagcatcccaaattgca 43461327  T
Q  201 acatcaataatcaagtagtaagataatgaaagttcatct 239  Q
    |||||||||||||||||||||||||||||||||||||||    
T  43461326 acatcaataatcaagtagtaagataatgaaagttcatct 43461288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 122; Significance: 1e-62; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 29 - 214
Target Start/End: Original strand, 40292358 - 40292543
Alignment:
Q  29 ctttcgtcaactagtacaccacttaaactactaatctcgcacttgattggggtttcagaagcaacatcgctagaaattgaaacaaccaagggtaatttgt 128  Q
    ||||||||||||| ||||||||||||||  ||||||| ||||||||||||||||||| ||||||| |||| |||||||||||||||||  |||||||| |    
T  40292358 ctttcgtcaactattacaccacttaaaccgctaatcttgcacttgattggggtttcaaaagcaacttcgccagaaattgaaacaaccataggtaattttt 40292457  T
Q  129 ccgcatccaacagttgtgctaaaaagtgaaaaatcccaagcgtcgtcagaaaccacagcatcccaaattgcaacatcaataatcaa 214  Q
    | |||||||||||||||||| ||||||||| ||||||||||||  ||||||||||||||| |||||||||||||||||||||||||    
T  40292458 ctgcatccaacagttgtgctgaaaagtgaagaatcccaagcgtgatcagaaaccacagcagcccaaattgcaacatcaataatcaa 40292543  T

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Target: chr1; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 29 - 220
Target Start/End: Original strand, 40285085 - 40285276
Alignment:
Q  29 ctttcgtcaactagtacaccacttaaactactaatctcgcacttgattggggtttcagaagcaacatcgctagaaattgaaacaaccaagggtaatttgt 128  Q
    ||||| ||||||| |||||| ||||||| | | ||||||||||| ||||||||||||||| |||| | || |||||||| ||||| ||| |||||  | |    
T  40285085 ctttcttcaactattacacctcttaaaccagttatctcgcacttaattggggtttcagaaacaacgttgccagaaattgcaacaagcaatggtaaccttt 40285184  T
Q  129 ccgcatccaacagttgtgctaaaaagtgaaaaatcccaagcgtcgtcagaaaccacagcatcccaaattgcaacatcaataatcaagtagta 220  Q
    |  ||||||  |||||| || ||||||||| |||||||| | |  ||||||||||||||| | ||||||||  |||||| ||||||||||||    
T  40285185 caacatccagtagttgttctgaaaagtgaagaatcccaaccatgatcagaaaccacagcagcacaaattgcttcatcaagaatcaagtagta 40285276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 30 - 118
Target Start/End: Original strand, 40266355 - 40266443
Alignment:
Q  30 tttcgtcaactagtacaccacttaaactactaatctcgcacttgattggggtttcagaagcaacatcgctagaaattgaaacaaccaag 118  Q
    |||| |||||||  ||||| ||||||| | | | ||||||||| ||||||||||||||| |||||   | |||||||| ||||||||||    
T  40266355 tttcttcaactacaacacctcttaaaccagtcaactcgcacttaattggggtttcagaaacaacacacccagaaattgcaacaaccaag 40266443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 83; Significance: 2e-39; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 133 - 239
Target Start/End: Complemental strand, 7076519 - 7076413
Alignment:
Q  133 atccaacagttgtgctaaaaagtgaaaaatcccaagcgtcgtcagaaaccacagcatcccaaattgcaacatcaataatcaagtagtaagataatgaaag 232  Q
    |||||||| ||||||||||||||||||||||| ||||||||||||||||||| ||  ||||||||||||||||||||||||||||||||||||||||||     
T  7076519 atccaacaattgtgctaaaaagtgaaaaatccaaagcgtcgtcagaaaccacggcggcccaaattgcaacatcaataatcaagtagtaagataatgaaac 7076420  T
Q  233 ttcatct 239  Q
    |||||||    
T  7076419 ttcatct 7076413  T

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