View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10165_low_18 (Length: 241)
Name: NF10165_low_18
Description: NF10165
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10165_low_18 |
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Alignment Details
Target: chr1 (Bit Score: 118; Significance: 2e-60; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 32 - 157
Target Start/End: Original strand, 38541216 - 38541341
Alignment:
| Q |
32 |
ataatcaaattttctctgaattcatttttatttttatatctctgatgggatctaatgtttctcaacatcaattattcaattcccattagtacattgacaa |
131 |
Q |
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| T |
38541216 |
ataatcaaattttgtctgaattcatttttatttttatatctctgatgggatctaatgcttctcaacatcaattattcaattcccattagtacattgacaa |
38541315 |
T |
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| Q |
132 |
tttgtctcataataatcttaaaaatg |
157 |
Q |
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| T |
38541316 |
tttgtctcataataatcttaaaaatg |
38541341 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 32 - 157
Target Start/End: Original strand, 38563434 - 38563559
Alignment:
| Q |
32 |
ataatcaaattttctctgaattcatttttatttttatatctctgatgggatctaatgtttctcaacatcaattattcaattcccattagtacattgacaa |
131 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
38563434 |
ataatcaaattttgtctgaattcatttttatttttatatctctgatgggatctaatgcttctcaacatcaattattcaattcccattagtacattgacaa |
38563533 |
T |
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| Q |
132 |
tttgtctcataataatcttaaaaatg |
157 |
Q |
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| T |
38563534 |
tttgtctcataataatcttaaaaatg |
38563559 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 145 - 232
Target Start/End: Original strand, 38565212 - 38565299
Alignment:
| Q |
145 |
aatcttaaaaatgcagttactaactactaatatatttcccctcaaatacacacatacacacaatgtaataaaactaactcacctttgc |
232 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
38565212 |
aatcttaaaaatgcagttactaactactaatatatttcccctcaaatacacacatacacacaacgtaataaaactaactcacctttgc |
38565299 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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