View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10165_low_19 (Length: 241)
Name: NF10165_low_19
Description: NF10165
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10165_low_19 |
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| [»] scaffold0003 (2 HSPs) |
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Alignment Details
Target: scaffold0003 (Bit Score: 205; Significance: 1e-112; HSPs: 2)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 18 - 226
Target Start/End: Complemental strand, 40957 - 40749
Alignment:
| Q |
18 |
actttggaggctaaagagaaggaaatttctaacgttatatttgcaatgttggcattcttgggatttatcagtcagcacagtgtcacaggaaaaggacgat |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40957 |
actttggaggctaaagagaaggaaatttctaacgttatatttgcaatgttggcattcttgggatttatcagtcagcacagtgtcacaggaaaaggacgat |
40858 |
T |
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| Q |
118 |
ttgataacctcttgcagcacctttcagacccatggcacaacaccattgttcaaacattgagtggcggcaactaaaatgtttgttgtatctaatgatatga |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40857 |
ttgataacctcttgcagcacctttcagacccatggcacaacaccattgttcaaacactgagtggcggcaactaaaatgtttgttgtatctaatgatatga |
40758 |
T |
|
| Q |
218 |
aagcctatg |
226 |
Q |
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||||||||| |
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| T |
40757 |
aagcctatg |
40749 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003; HSP #2
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 18 - 226
Target Start/End: Complemental strand, 34324 - 34116
Alignment:
| Q |
18 |
actttggaggctaaagagaaggaaatttctaacgttatatttgcaatgttggcattcttgggatttatcagtcagcacagtgtcacaggaaaaggacgat |
117 |
Q |
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|||||||||||||||||||||||||||||||| | || ||| ||| ||||||||||||||||||||||||||||||||| || ||||||||||||||| |
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| T |
34324 |
actttggaggctaaagagaaggaaatttctaatggtagattggcattgttggcattcttgggatttatcagtcagcacaaagttgcaggaaaaggacgat |
34225 |
T |
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| Q |
118 |
ttgataacctcttgcagcacctttcagacccatggcacaacaccattgttcaaacattgagtggcggcaactaaaatgtttgttgtatctaatgatatga |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||| ||||| |||| |
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| T |
34224 |
ttgataacctcttgcagcacctttcagacccatggcacaacatcattgttcaaacactgagtggcggcaactaaaatgtttgttgtatccaatgacatga |
34125 |
T |
|
| Q |
218 |
aagcctatg |
226 |
Q |
| |
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||||||||| |
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| T |
34124 |
aagcctatg |
34116 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 205; Significance: 1e-112; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 18 - 226
Target Start/End: Original strand, 27446401 - 27446609
Alignment:
| Q |
18 |
actttggaggctaaagagaaggaaatttctaacgttatatttgcaatgttggcattcttgggatttatcagtcagcacagtgtcacaggaaaaggacgat |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27446401 |
actttggaggctaaagagaaggaaatttctaacgttatatttgcaatgttggcattcttgggatttatcagtcagcacagtgtcacaggaaaaggacgat |
27446500 |
T |
|
| Q |
118 |
ttgataacctcttgcagcacctttcagacccatggcacaacaccattgttcaaacattgagtggcggcaactaaaatgtttgttgtatctaatgatatga |
217 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27446501 |
ttgataacctcttgcagcacctttcagacccatggcacaacaccattgttcaaacactgagtggcggcaactaaaatgtttgttgtatctaatgatatga |
27446600 |
T |
|
| Q |
218 |
aagcctatg |
226 |
Q |
| |
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||||||||| |
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| T |
27446601 |
aagcctatg |
27446609 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 173; Significance: 4e-93; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 18 - 226
Target Start/End: Complemental strand, 14455091 - 14454883
Alignment:
| Q |
18 |
actttggaggctaaagagaaggaaatttctaacgttatatttgcaatgttggcattcttgggatttatcagtcagcacagtgtcacaggaaaaggacgat |
117 |
Q |
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|
|||||||||||||||||||||||||||||||||| || ||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
14455091 |
actttggaggctaaagagaaggaaatttctaacggtagattggcaatgttggcattcttgggatttatcagtcagcacaatgtcacaggaaaaggacgat |
14454992 |
T |
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| Q |
118 |
ttgataacctcttgcagcacctttcagacccatggcacaacaccattgttcaaacattgagtggcggcaactaaaatgtttgttgtatctaatgatatga |
217 |
Q |
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|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||| ||| |
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| T |
14454991 |
ttgataacctcttggagcacctttcagacccatggcacaacaccattgttcaaacactgagtggcggcaactaaaatgtttgttgtatccaatgacctga |
14454892 |
T |
|
| Q |
218 |
aagcctatg |
226 |
Q |
| |
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||||||||| |
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| T |
14454891 |
aagcctatg |
14454883 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 165; Significance: 2e-88; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 18 - 226
Target Start/End: Original strand, 13764129 - 13764337
Alignment:
| Q |
18 |
actttggaggctaaagagaaggaaatttctaacgttatatttgcaatgttggcattcttgggatttatcagtcagcacagtgtcacaggaaaaggacgat |
117 |
Q |
| |
|
||||||||||||||||||||| |||||||||||| || ||| ||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
13764129 |
actttggaggctaaagagaagtaaatttctaacggtagattggcaatgttgacattcttgggatttatcagtcagcacaatgtcacaggaaaaggacgat |
13764228 |
T |
|
| Q |
118 |
ttgataacctcttgcagcacctttcagacccatggcacaacaccattgttcaaacattgagtggcggcaactaaaatgtttgttgtatctaatgatatga |
217 |
Q |
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|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||| ||||||||||||| ||||| |||| |
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| T |
13764229 |
ttgataacctcttgcagcacctttcagacccatggcaaaacaccattgttcaaacactgagtggcggcaactaaagtgtttgttgtatccaatgacatga |
13764328 |
T |
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| Q |
218 |
aagcctatg |
226 |
Q |
| |
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||||||||| |
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| T |
13764329 |
aagcctatg |
13764337 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 127; Significance: 1e-65; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 60 - 226
Target Start/End: Original strand, 11612574 - 11612740
Alignment:
| Q |
60 |
gcaatgttggcattcttgggatttatcagtcagcacagtgtcacaggaaaaggacgatttgataacctcttgcagcacctttcagacccatggcacaaca |
159 |
Q |
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|||||||||||||||||||||||||||| |||||||| ||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11612574 |
gcaatgttggcattcttgggatttatcattcagcacaatgtgacaggaaaaggaccatttgataacctcttgcagcacctttcagacccatggcacaaca |
11612673 |
T |
|
| Q |
160 |
ccattgttcaaacattgagtggcggcaactaaaatgtttgttgtatctaatgatatgaaagcctatg |
226 |
Q |
| |
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|||||||||||||| |||||||| ||||||||||| |||| |||||| ||||| ||||||||||||| |
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| T |
11612674 |
ccattgttcaaacactgagtggcagcaactaaaatctttgatgtatccaatgacatgaaagcctatg |
11612740 |
T |
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