View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10165_low_21 (Length: 218)
Name: NF10165_low_21
Description: NF10165
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10165_low_21 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 183; Significance: 4e-99; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 1 - 218
Target Start/End: Original strand, 17471668 - 17471879
Alignment:
| Q |
1 |
ttcatcttttggaggtatctaagtagaaactaggaagctgttcccttatgtatacattgactatgacctttgttgcaatataagtggataattaacttgg |
100 |
Q |
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| T |
17471668 |
ttcatcttttggaggtatctaagtagaaactaggaagctggtcctttatgt------tgactatgacctttgttgcaatataagtggataattaacttgg |
17471761 |
T |
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| Q |
101 |
acattttcatgtgattttgtttatgagaaaatgctatgtaggaattttaatttggtggtccctcctcttgtgttgataccaacccaatagttttgtatgg |
200 |
Q |
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| T |
17471762 |
acattttcatgtgattttgtttatgagaaaatgctatgtaggaattttaatttggtggtccctcctcttgtgttgatgccaacccaatagttttgtatgg |
17471861 |
T |
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| Q |
201 |
ttggcaattcatagttca |
218 |
Q |
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| T |
17471862 |
ttggcaattcatagttca |
17471879 |
T |
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