View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10165_low_4 (Length: 430)

Name: NF10165_low_4
Description: NF10165
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10165_low_4
NF10165_low_4
[»] chr4 (1 HSPs)
chr4 (18-311)||(51731355-51731648)
[»] chr2 (2 HSPs)
chr2 (151-209)||(19192283-19192341)
chr2 (151-231)||(19054431-19054511)


Alignment Details
Target: chr4 (Bit Score: 266; Significance: 1e-148; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 18 - 311
Target Start/End: Original strand, 51731355 - 51731648
Alignment:
Q  18 caaataatctaacacttccgtgtgtgtaggaaaatcaggattatctctattaggccaagggaaatcagtgaattcataatctctacgatgagattgaagc 117  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  51731355 caaataatccaacacttccgtgtgtgtaggaaaatcaggattatctctattaggccaagggaaatcagtgaattcataatctctacaatgagattgaagc 51731454  T
Q  118 tttgtagaattgtatgtacaatgcttccataccccaccaatggagtcagtggcttcaaatataataggattgtggtgtaatagttgttttgcaattgcta 217  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||    
T  51731455 tttgtagaattgtacgtacaatgcttccataccccaccaatggagtcagtggcttcaaatacaataggattgtggtgtaatagctgttttgcaattgcta 51731554  T
Q  218 tgccacttactccacctcctattatgcctatttttgatgctatttttggatggttattttcacggttcatagacatgattcttttggtattgat 311  Q
    ||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51731555 tgccacttactccacctcctattatgcctatttttgatattatttttggatggttattttcacggttcatagacatgattcttttggtattgat 51731648  T

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Target: chr2 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 151 - 209
Target Start/End: Original strand, 19192283 - 19192341
Alignment:
Q  151 ccaccaatggagtcagtggcttcaaatataataggattgtggtgtaatagttgttttgc 209  Q
    ||||||||||||| |||||||||||| | |||||| |||| |||| |||||||||||||    
T  19192283 ccaccaatggagttagtggcttcaaaaacaatagggttgtagtgtgatagttgttttgc 19192341  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 151 - 231
Target Start/End: Complemental strand, 19054511 - 19054431
Alignment:
Q  151 ccaccaatggagtcagtggcttcaaatataataggattgtggtgtaatagttgttttgcaattgctatgccacttactcca 231  Q
    |||||||| || |||||||||||||| | |||||| |||| |||| ||||||||||||| |  |||| |||||| ||||||    
T  19054511 ccaccaattgaatcagtggcttcaaaaacaatagggttgtagtgtgatagttgttttgctacggctaagccactaactcca 19054431  T

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