View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10165_low_5 (Length: 409)
Name: NF10165_low_5
Description: NF10165
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10165_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 384; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 384; E-Value: 0
Query Start/End: Original strand, 1 - 392
Target Start/End: Complemental strand, 49686940 - 49686549
Alignment:
| Q |
1 |
aattaaaggtaatttcatcagctaacaatcgaaatgggttaccagaaagtgcaaaacctaatttaatgacaggaagatgaaacggaaaacaggacgtgaa |
100 |
Q |
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| T |
49686940 |
aattaaaggtaatttcatcagctaacaatcgaaatgggttaccagaaagtgcaaaacctaatttaatgacaggaagatgaaacggaaaacaggacgtgaa |
49686841 |
T |
|
| Q |
101 |
agagtggttggactcatcattagatattgttgaatcaccgaagtaaaaatcatagcgaggacatgtactatttttgaagaaattatttggtgggttgctg |
200 |
Q |
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| T |
49686840 |
agagtggttgggctcatcattagatattgttgaatcaccgaagtaaaaatcatagcgaggacatgtactatttttgaagaaattatttggtgggttgctg |
49686741 |
T |
|
| Q |
201 |
gctaatttttgggtatggctgcatttgaaagctgttatgttgtctttcatataaaaagttccaaaaggagagggaggagggagagtgatatcatagctaa |
300 |
Q |
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| T |
49686740 |
gctaatttttgggtatggctgcatttgaaagctgttatgttgtctttcatataaaaagttccaaaaggagagggaggagggagagtgatatcatagctaa |
49686641 |
T |
|
| Q |
301 |
aggcctcgcaagcatttttctgcaaaagcttggtgaaattcagatcaacaatggaaatagtgttggaccgctcatttttaatgtttgtaact |
392 |
Q |
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| T |
49686640 |
aggcctcgcaagcatttttctgcaaaagcttggtgaaattcagatcaacaatggaaatagtgttgggccgctcatttttaatgtttgtaact |
49686549 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 5 - 365
Target Start/End: Complemental strand, 49691202 - 49690842
Alignment:
| Q |
5 |
aaaggtaatttcatcagctaacaatcgaaatgggttaccagaaagtgcaaaacctaatttaatgacaggaagatgaaacggaaaacaggacgtgaaagag |
104 |
Q |
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| T |
49691202 |
aaaggtaatttcattagttaaaaagggaaatgggttaccggaaagtgcaaagcctaattcattgacaggaagatgcaatgacgaacaggacacgaaagag |
49691103 |
T |
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| Q |
105 |
tggttggactcatcattagatattgttgaatcaccgaagtaaaaatcatagcgaggacatgtactatttttgaagaaattatttggtgggttgctggcta |
204 |
Q |
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|||||||||||||||| | |||||| |||| || ||||||||||||||| || |||| | ||||||| ||||||||||| |||| |||| || ||| |
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| T |
49691102 |
tggttggactcatcatcaaatattg---aatcgccaaagtaaaaatcatagggatgacaagaactatttatgaagaaattacttggagggtgaatgccta |
49691006 |
T |
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| Q |
205 |
atttttgggtatggctgcatttgaaagctgttatgttgtctttcatataaaaagttccaaaaggagagggaggagggagagtgatat---catagctaaa |
301 |
Q |
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| T |
49691005 |
attttcgggtatggttgcatttgaaagctgttatgtagtttttcataaaaaaagttccaaaaggagtgggaggagggagggtaatattaacatagctgaa |
49690906 |
T |
|
| Q |
302 |
ggcctcgcaagcatttttctgcaaaagcttggtgaaattcagatcaacaatggaaatagtgttg |
365 |
Q |
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| T |
49690905 |
tgcctcacaagcatttttctccaaaagcttggtgatattggggtcaataatggaaatagtgttg |
49690842 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 5 - 365
Target Start/End: Complemental strand, 49679568 - 49679207
Alignment:
| Q |
5 |
aaaggtaatttcatcagctaacaatcgaaatgggttaccagaaagtgcaaaacctaatttaatgacaggaagatgaaacggaaaacaggacgtgaaagag |
104 |
Q |
| |
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|||||| |||| |||| |||| ||| ||||||| || || ||||||||||| ||||||| | ||||||||||||| || | |||||||| ||||||| |
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| T |
49679568 |
aaaggttatttgatcatctaagaatggaaatggattgccggaaagtgcaaagcctaattcattgacaggaagatgcaatgacgaacaggacacgaaagag |
49679469 |
T |
|
| Q |
105 |
tggttggactcatcattagatattgttgaatcaccgaagtaaaaatcatagcgaggacatgtactatttttgaagaaattatttggtgggttgctggcta |
204 |
Q |
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| T |
49679468 |
tggttggactcatcatcaaatattg---aatcgccaaagtaaaaatcatagggatgacaagaactatttctgaagaaattacttggaggttggatgccta |
49679372 |
T |
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| Q |
205 |
atttttgggtatggctgcatttgaaagctgttatgttgtctttcat-ataaaaagttccaaaaggagagggaggagggagagtgatat---catagctaa |
300 |
Q |
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| T |
49679371 |
attttcgggtacggttgcatttgaaagctgttatgtagtttttcataaaaaaaagttccaaaaggagaggaaggaaggagtgtaatattaacatggctga |
49679272 |
T |
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| Q |
301 |
aggcctcgcaagcatttttctgcaaaagcttggtgaaattcagatcaacaatggaaatagtgttg |
365 |
Q |
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| T |
49679271 |
atgcctcacaagcattcttctccaaaagcttggtgatattggggtcaataatggaaatagtgttg |
49679207 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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