View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10165_low_9 (Length: 316)

Name: NF10165_low_9
Description: NF10165
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10165_low_9
NF10165_low_9
[»] chr7 (1 HSPs)
chr7 (18-307)||(41377576-41377868)


Alignment Details
Target: chr7 (Bit Score: 267; Significance: 1e-149; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 18 - 307
Target Start/End: Original strand, 41377576 - 41377868
Alignment:
Q  18 aaaatttccacgttgaggttttacatgttaccatttcccatataataataataaccaaccatgcataaaaa---atatgagtgtccaataaataatgttt 114  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||   |||||||||| |||||||||||||||    
T  41377576 aaaatttccacgttgaggttttacatgttaccatttcccatataataataataaccaaccatgcataataacaaatatgagtgttcaataaataatgttt 41377675  T
Q  115 atgtacttactgcaacatcatgacccctgttggatatagtagcatgttgaggcttgtagttcctctttagctccccaaactctgggatcatcacactcac 214  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  41377676 atgtacttactgcaacatcatgacccctgttggatatagtagcatgttgaggcttgtagttcctctttagatccccaaactctgggatcatcacactcac 41377775  T
Q  215 tctgtcactcgacaaatcaattggagattgcatctcccctttacaagctgcccattctcttttgagatcaccccaatgtctaggtccctttgc 307  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41377776 tctgtcactcgacaaatcaattggagattgcatctcccctttacaagctgcccattctcttttgagatcaccccaatgtctaggtccctttgc 41377868  T

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