View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10166_high_1 (Length: 486)

Name: NF10166_high_1
Description: NF10166
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10166_high_1
NF10166_high_1
[»] chr4 (9 HSPs)
chr4 (42-480)||(56294914-56295377)
chr4 (328-383)||(55000627-55000681)
chr4 (328-412)||(49574062-49574147)
chr4 (328-459)||(1865490-1865622)
chr4 (328-380)||(11380271-11380321)
chr4 (328-383)||(50183182-50183236)
chr4 (329-389)||(22405759-22405819)
chr4 (328-411)||(46577489-46577572)
chr4 (328-356)||(51702657-51702685)
[»] chr8 (4 HSPs)
chr8 (328-437)||(36228497-36228605)
chr8 (361-458)||(32318068-32318166)
chr8 (328-405)||(36229324-36229399)
chr8 (328-381)||(39320923-39320975)
[»] chr2 (8 HSPs)
chr2 (365-478)||(25617707-25617820)
chr2 (365-478)||(29647333-29647446)
chr2 (328-381)||(44356805-44356857)
chr2 (328-380)||(3322902-3322953)
chr2 (328-383)||(13913463-13913517)
chr2 (328-381)||(44357599-44357651)
chr2 (328-388)||(38799251-38799309)
chr2 (328-356)||(1677560-1677588)
[»] scaffold0085 (1 HSPs)
scaffold0085 (328-381)||(14947-14999)
[»] chr3 (14 HSPs)
chr3 (328-381)||(45081479-45081531)
chr3 (368-438)||(36497004-36497074)
chr3 (328-383)||(45059775-45059830)
chr3 (328-381)||(37727621-37727672)
chr3 (328-373)||(48058267-48058310)
chr3 (328-381)||(46915786-46915838)
chr3 (328-438)||(36502333-36502441)
chr3 (340-383)||(45082204-45082246)
chr3 (328-381)||(1093163-1093215)
chr3 (328-381)||(25081551-25081603)
chr3 (328-356)||(34832030-34832058)
chr3 (328-356)||(50703733-50703761)
chr3 (328-356)||(50704377-50704405)
chr3 (328-356)||(55336829-55336857)
[»] chr1 (11 HSPs)
chr1 (328-411)||(2071446-2071528)
chr1 (368-438)||(13649493-13649563)
chr1 (328-416)||(26284613-26284699)
chr1 (362-459)||(10919418-10919518)
chr1 (368-438)||(19138872-19138942)
chr1 (328-449)||(23817591-23817710)
chr1 (328-388)||(15418219-15418278)
chr1 (328-373)||(19790832-19790875)
chr1 (328-373)||(50546071-50546114)
chr1 (328-379)||(22914697-22914746)
chr1 (328-380)||(49568896-49568947)
[»] scaffold0025 (1 HSPs)
scaffold0025 (344-398)||(150593-150645)
[»] chr6 (6 HSPs)
chr6 (344-398)||(13111512-13111564)
chr6 (328-381)||(22046418-22046470)
chr6 (328-381)||(22058826-22058878)
chr6 (385-452)||(18094399-18094466)
chr6 (328-381)||(22047212-22047264)
chr6 (340-381)||(1859797-1859837)
[»] chr7 (6 HSPs)
chr7 (328-459)||(43448444-43448575)
chr7 (328-381)||(41115495-41115547)
chr7 (342-412)||(29065401-29065470)
chr7 (328-405)||(17917082-17917157)
chr7 (328-377)||(44545272-44545320)
chr7 (328-431)||(3772588-3772688)
[»] chr5 (7 HSPs)
chr5 (328-415)||(22798485-22798570)
chr5 (328-373)||(33574039-33574082)
chr5 (328-388)||(18861883-18861941)
chr5 (328-431)||(22967143-22967243)
chr5 (328-357)||(10470873-10470902)
chr5 (368-413)||(39933462-39933507)
chr5 (328-356)||(41609497-41609525)
[»] scaffold0006 (1 HSPs)
scaffold0006 (368-438)||(139273-139343)
[»] scaffold1370 (1 HSPs)
scaffold1370 (328-389)||(910-969)


Alignment Details
Target: chr4 (Bit Score: 290; Significance: 1e-162; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 290; E-Value: 1e-162
Query Start/End: Original strand, 42 - 480
Target Start/End: Original strand, 56294914 - 56295377
Alignment:
Q  42 agtaagactaacaattaaacataatcataaatctattctatataactagtaatttattnnnnnnngaaa-------gtaaattcttgtatgctttaccaa 134  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||        |||       ||||||||||||||||||||||||    
T  56294914 agtaaaactaacaattaaacataatcataaatctattctatataactattaatttattaaaaaaaaaaaaaaaaaagtaaattcttgtatgctttaccaa 56295013  T
Q  135 atttaacctatgactatgattgtgattctactttgattttatatgaaaaatgttctgctcaaattatacctttttattcagttcatctcattggagtgac 234  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  56295014 atttaacctatgactatgattgtgattctactttgattttatatgaaaaatgttctgctcaaattatacctttttatttagttcatctcattggagtgac 56295113  T
Q  235 ttctccatgtttgattaagctttaactcagttttgcctacatttaaacataatgtctgttttcatttatgatattgagtatccact-------------- 320  Q
    |||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||                  
T  56295114 ttctccatgtttgattaagc-ttaactcatttttgcctacatttaaacataatgtctgttttcatttatgatattgagtatccactgatatatatatata 56295212  T
Q  321 ------aatacaaatatatatagggcatatcaagtgagaggacctttttaaaatgagagatgagagggtgaaatcgcaacccttagatcaatctttattg 414  Q
           ||| | ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||| ||||||||||||    
T  56295213 tatatatatatatatatatatagggcatatcaagtgagaggacc-ttttaaaatgagagatgagagggtgaaatcgcaatccttagaccaatctttattg 56295311  T
Q  415 tgttacttaaattttaaaactgcacagtataattttttcattccccatatgcctgcttcttctctc 480  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||    
T  56295312 tgttacttaaattttaaaactgcacagtataattttttcatttcccatatgtctgcttcttctctc 56295377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 328 - 383
Target Start/End: Complemental strand, 55000681 - 55000627
Alignment:
Q  328 atatatatagggcatatcaagtgagaggacctttttaaaatgagagatgagagggt 383  Q
    |||||||||||||||||||||||| |||||| ||||||||||||||||||||||||    
T  55000681 atatatatagggcatatcaagtgaaaggacc-ttttaaaatgagagatgagagggt 55000627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 328 - 412
Target Start/End: Original strand, 49574062 - 49574147
Alignment:
Q  328 atatatatagggcat--atcaagtgagaggacctttttaaaatgagagatgagagggtgaaatcgcaacccttagatcaatctttat 412  Q
    |||||||||||| ||  ||||||||||||||  || |||||||||||| ||||||||| ||||| ||||||||||||||||| ||||    
T  49574062 atatatatagggaatgtatcaagtgagaggag-ttcttaaaatgagaggtgagagggttaaatcacaacccttagatcaatcattat 49574147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 328 - 459
Target Start/End: Original strand, 1865490 - 1865622
Alignment:
Q  328 atatatatagggcatatcaagtgagaggacctttttaaaatgagagatgagagggtgaaatcgcaacccttagatcaatctttattgtgttacttaaatt 427  Q
    ||||||||||||  |||||| |||||| ||  | |||||||||||||||||||||  | ||  |||||||| ||| ||||||||||||| | ||||| ||    
T  1865490 atatatatagggtgtatcaaatgagagcac--tgttaaaatgagagatgagagggatacataacaacccttggattaatctttattgtgctccttaattt 1865587  T
Q  428 ttaaaactgcacagtataa---ttttttcattccc 459  Q
    | |||||||||  ||||||   |||||||||||||    
T  1865588 taaaaactgcagcgtataaatcttttttcattccc 1865622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 328 - 380
Target Start/End: Original strand, 11380271 - 11380321
Alignment:
Q  328 atatatatagggcatatcaagtgagaggacctttttaaaatgagagatgagag 380  Q
    ||||||||||| ||||||||||||||||||  ||||| |||||||||||||||    
T  11380271 atatatataggacatatcaagtgagaggac--ttttataatgagagatgagag 11380321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 328 - 383
Target Start/End: Original strand, 50183182 - 50183236
Alignment:
Q  328 atatatatagggcatatcaagtgagaggacctttttaaaatgagagatgagagggt 383  Q
    ||||||||||||||||||||||||||||  |||||||  ||||||| |||||||||    
T  50183182 atatatatagggcatatcaagtgagagg-gctttttattatgagaggtgagagggt 50183236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 329 - 389
Target Start/End: Original strand, 22405759 - 22405819
Alignment:
Q  329 tatatatagggcatatcaagtgagaggacctttttaaaatgagagatgagagggtgaaatc 389  Q
    |||||||| ||  |||||||||||||||| |||| | ||| |||||||||||||| |||||    
T  22405759 tatatatatggtgtatcaagtgagaggacattttaataataagagatgagagggttaaatc 22405819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 328 - 411
Target Start/End: Original strand, 46577489 - 46577572
Alignment:
Q  328 atatatat-agggcatatcaagtgagaggacctttttaaaatgagagatgagagggtgaaatcgcaacccttagatcaatcttta 411  Q
    |||||||| |||||||||||||||||||  | ||||||  ||||||| |||||||||  ||||  ||||||||||| ||||||||    
T  46577489 atatatatgagggcatatcaagtgagagtgc-tttttattatgagaggtgagagggttgaatcctaacccttagattaatcttta 46577572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 328 - 356
Target Start/End: Original strand, 51702657 - 51702685
Alignment:
Q  328 atatatatagggcatatcaagtgagagga 356  Q
    |||||||||||||||||||||||||||||    
T  51702657 atatatatagggcatatcaagtgagagga 51702685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 94; Significance: 1e-45; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 328 - 437
Target Start/End: Original strand, 36228497 - 36228605
Alignment:
Q  328 atatatatagggcatatcaagtgagaggacctttttaaaatgagagatgagagggtgaaatcgcaacccttagatcaatctttattgtgttacttaaatt 427  Q
    |||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  36228497 atatatatagggcatatcaagtaagaggacctttt-aaaatgagagatgagagggtgaaatcacaacccttagatcaatctttattgtgttacttaaatt 36228595  T
Q  428 ttaaaactgc 437  Q
    ||||||||||    
T  36228596 ttaaaactgc 36228605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 361 - 458
Target Start/End: Original strand, 32318068 - 32318166
Alignment:
Q  361 tttaaaatgagagatgagagggtgaaatcgcaacccttagatcaatctttattgtgttacttaaattttaaaactgcacagtataat-tttttcattcc 458  Q
    ||||||||||||||||||||||| ||||  |||||||| ||||||||| ||||||||||||||| ||||||||| |||  ||||||| |||||||||||    
T  32318068 tttaaaatgagagatgagagggttaaattacaacccttggatcaatctatattgtgttacttaatttttaaaaccgcaacgtataatctttttcattcc 32318166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 328 - 405
Target Start/End: Complemental strand, 36229399 - 36229324
Alignment:
Q  328 atatatatagggcatatcaagtgagaggacctttttaaaatgagagatgagagggtgaaatcgcaacccttagatcaa 405  Q
    ||||||||||||  |||||| |||||  || | ||||||||||||| ||||||||| |||||||||||||||||||||    
T  36229399 atatatatagggtgtatcaaatgagaccac-tatttaaaatgagag-tgagagggttaaatcgcaacccttagatcaa 36229324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 328 - 381
Target Start/End: Original strand, 39320923 - 39320975
Alignment:
Q  328 atatatatagggcatatcaagtgagaggacctttttaaaatgagagatgagagg 381  Q
    |||||||||||||||||||||||||| || ||| ||| | ||||||||||||||    
T  39320923 atatatatagggcatatcaagtgagatga-cttgttatagtgagagatgagagg 39320975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 54; Significance: 8e-22; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 365 - 478
Target Start/End: Complemental strand, 25617820 - 25617707
Alignment:
Q  365 aaatgagagatgagagggtgaaatcgcaacccttagatcaatctttattgtgttacttaaattttaaaactgcacagtataattttttcattccccatat 464  Q
    ||||||||| ||||||||  ||||| ||||||||  |||||||||||||||| ||||||| ||| |||| ||||  |||||||||||||||||||| | |    
T  25617820 aaatgagaggtgagagggataaatcacaacccttgaatcaatctttattgtgctacttaattttaaaaattgcagcgtataattttttcattcccctttt 25617721  T
Q  465 gcctgcttcttctc 478  Q
    || |||||||||||    
T  25617720 gcgtgcttcttctc 25617707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 365 - 478
Target Start/End: Complemental strand, 29647446 - 29647333
Alignment:
Q  365 aaatgagagatgagagggtgaaatcgcaacccttagatcaatctttattgtgttacttaaattttaaaactgcacagtataattttttcattccccatat 464  Q
    ||||||||| ||||||||  ||||| ||||| ||  |||||||||||||||| ||||||| ||| |||| ||||  |||||||||||| ||||||| | |    
T  29647446 aaatgagaggtgagagggataaatcacaacctttgaatcaatctttattgtgctacttaattttaaaaattgcagcgtataatttttttattcccctttt 29647347  T
Q  465 gcctgcttcttctc 478  Q
    || ||||| |||||    
T  29647346 gcgtgcttattctc 29647333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 328 - 381
Target Start/End: Original strand, 44356805 - 44356857
Alignment:
Q  328 atatatatagggcatatcaagtgagaggacctttttaaaatgagagatgagagg 381  Q
    |||||||||||||||||||||||||||||  || ||||||||||||||||||||    
T  44356805 atatatatagggcatatcaagtgagagga-gttgttaaaatgagagatgagagg 44356857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 328 - 380
Target Start/End: Original strand, 3322902 - 3322953
Alignment:
Q  328 atatatatagggcatatcaagtgagaggacctttttaaaatgagagatgagag 380  Q
    ||||||||| ||||||||||||||||||| | |||||||||||||||||||||    
T  3322902 atatatatatggcatatcaagtgagagga-cattttaaaatgagagatgagag 3322953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 328 - 383
Target Start/End: Complemental strand, 13913517 - 13913463
Alignment:
Q  328 atatatatagggcatatcaagtgagaggacctttttaaaatgagagatgagagggt 383  Q
    ||||||||||||||||||||||||||||| | | ||| ||||||||||||||||||    
T  13913517 atatatatagggcatatcaagtgagagga-catcttataatgagagatgagagggt 13913463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 328 - 381
Target Start/End: Complemental strand, 44357651 - 44357599
Alignment:
Q  328 atatatatagggcatatcaagtgagaggacctttttaaaatgagagatgagagg 381  Q
    ||||||||||| |||||||||||||||||  || ||||||||||||||||||||    
T  44357651 atatatataggacatatcaagtgagagga-attgttaaaatgagagatgagagg 44357599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 328 - 388
Target Start/End: Complemental strand, 38799309 - 38799251
Alignment:
Q  328 atatatatagggcatatcaagtgagaggacctttttaaaatgagagatgagagggtgaaat 388  Q
    ||||||||||||||| |||||||||||| |  |||||| ||||||| ||||||||| ||||    
T  38799309 atatatatagggcatttcaagtgagagggc--ttttaagatgagaggtgagagggttaaat 38799251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 328 - 356
Target Start/End: Original strand, 1677560 - 1677588
Alignment:
Q  328 atatatatagggcatatcaagtgagagga 356  Q
    |||||||||||||||||||||||||||||    
T  1677560 atatatatagggcatatcaagtgagagga 1677588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0085 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: scaffold0085
Description:

Target: scaffold0085; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 328 - 381
Target Start/End: Complemental strand, 14999 - 14947
Alignment:
Q  328 atatatatagggcatatcaagtgagaggacctttttaaaatgagagatgagagg 381  Q
    ||||||||||||||||||||||||||| ||| ||||||||||||||||||||||    
T  14999 atatatatagggcatatcaagtgagagcacc-ttttaaaatgagagatgagagg 14947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 328 - 381
Target Start/End: Original strand, 45081479 - 45081531
Alignment:
Q  328 atatatatagggcatatcaagtgagaggacctttttaaaatgagagatgagagg 381  Q
    ||||||||||||||||||||||||||| ||| ||||||||||||||||||||||    
T  45081479 atatatatagggcatatcaagtgagagcacc-ttttaaaatgagagatgagagg 45081531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 368 - 438
Target Start/End: Original strand, 36497004 - 36497074
Alignment:
Q  368 tgagagatgagagggtgaaatcgcaacccttagatcaatctttattgtgttacttaaattttaaaactgca 438  Q
    |||||||||||||||| ||||| |||||||||||||| | |||| ||||||| |||| | |||||||||||    
T  36497004 tgagagatgagagggttaaatcacaacccttagatcagtatttactgtgttatttaattattaaaactgca 36497074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 328 - 383
Target Start/End: Original strand, 45059775 - 45059830
Alignment:
Q  328 atatatat-agggcatatcaagtgagaggacctttttaaaatgagagatgagagggt 383  Q
    |||||||| ||| ||||||||||||||||||||||| ||||||||||||||||||||    
T  45059775 atatatatgaggacatatcaagtgagaggacctttt-aaaatgagagatgagagggt 45059830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 328 - 381
Target Start/End: Original strand, 37727621 - 37727672
Alignment:
Q  328 atatatatagggcatatcaagtgagaggacctttttaaaatgagagatgagagg 381  Q
    |||||||||||||||||||| |||||||||  | ||||||||||||||||||||    
T  37727621 atatatatagggcatatcaaatgagaggac--tcttaaaatgagagatgagagg 37727672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 328 - 373
Target Start/End: Original strand, 48058267 - 48058310
Alignment:
Q  328 atatatatagggcatatcaagtgagaggacctttttaaaatgagag 373  Q
    ||||||||||||||||||||||||||||||  ||||||||||||||    
T  48058267 atatatatagggcatatcaagtgagaggac--ttttaaaatgagag 48058310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 328 - 381
Target Start/End: Original strand, 46915786 - 46915838
Alignment:
Q  328 atatatatagggcatatcaagtgagaggacctttttaaaatgagagatgagagg 381  Q
    ||||||||| |||||||||||||||||||  || ||||||||||||||||||||    
T  46915786 atatatatatggcatatcaagtgagagga-gttgttaaaatgagagatgagagg 46915838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 328 - 438
Target Start/End: Complemental strand, 36502441 - 36502333
Alignment:
Q  328 atatatatagggcatatcaagtgagaggacctttttaaaatgagagatgagagggtgaaatcgcaacccttagatcaatctttattgtgttacttaaatt 427  Q
    |||||||||||||||||||||||||||||   |||||   ||||||||||||||||  ||||  |||| || ||| |||||||| |||| || |||| ||    
T  36502441 atatatatagggcatatcaagtgagagga--gttttattgtgagagatgagagggtttaatcctaaccattggattaatctttactgtgatatttaattt 36502344  T
Q  428 ttaaaactgca 438  Q
    | |||| ||||    
T  36502343 taaaaattgca 36502333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 340 - 383
Target Start/End: Complemental strand, 45082246 - 45082204
Alignment:
Q  340 catatcaagtgagaggacctttttaaaatgagagatgagagggt 383  Q
    ||||||||||||||||| ||||| ||||||||||||||||||||    
T  45082246 catatcaagtgagaggatctttt-aaaatgagagatgagagggt 45082204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 328 - 381
Target Start/End: Original strand, 1093163 - 1093215
Alignment:
Q  328 atatatatagggcatatcaagtgagaggacctttttaaaatgagagatgagagg 381  Q
    |||||||||||||||||||||||||||||  |  ||| ||||||||||||||||    
T  1093163 atatatatagggcatatcaagtgagagga-gtagttacaatgagagatgagagg 1093215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 328 - 381
Target Start/End: Complemental strand, 25081603 - 25081551
Alignment:
Q  328 atatatatagggcatatcaagtgagaggacctttttaaaatgagagatgagagg 381  Q
    |||||||||||||||||||||||||||||  || ||| | ||||||||||||||    
T  25081603 atatatatagggcatatcaagtgagagga-gttgttatagtgagagatgagagg 25081551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 328 - 356
Target Start/End: Original strand, 34832030 - 34832058
Alignment:
Q  328 atatatatagggcatatcaagtgagagga 356  Q
    |||||||||||||||||||||||||||||    
T  34832030 atatatatagggcatatcaagtgagagga 34832058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 328 - 356
Target Start/End: Original strand, 50703733 - 50703761
Alignment:
Q  328 atatatatagggcatatcaagtgagagga 356  Q
    |||||||||||||||||||||||||||||    
T  50703733 atatatatagggcatatcaagtgagagga 50703761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 328 - 356
Target Start/End: Complemental strand, 50704405 - 50704377
Alignment:
Q  328 atatatatagggcatatcaagtgagagga 356  Q
    |||||||||||||||||||||||||||||    
T  50704405 atatatatagggcatatcaagtgagagga 50704377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 328 - 356
Target Start/End: Original strand, 55336829 - 55336857
Alignment:
Q  328 atatatatagggcatatcaagtgagagga 356  Q
    |||||||||||||||||||||||||||||    
T  55336829 atatatatagggcatatcaagtgagagga 55336857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 328 - 411
Target Start/End: Complemental strand, 2071528 - 2071446
Alignment:
Q  328 atatatatagggcatatcaagtgagaggacctttttaaaatgaga-gatgagagggtgaaatcgcaacccttagatcaatcttta 411  Q
    ||||||||||||||||||||||||||||||  ||||||||||||| | ||||||| | |||||  |||| |||||||||||||||    
T  2071528 atatatatagggcatatcaagtgagaggac--ttttaaaatgagagggtgagaggattaaatcataacctttagatcaatcttta 2071446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 368 - 438
Target Start/End: Complemental strand, 13649563 - 13649493
Alignment:
Q  368 tgagagatgagagggtgaaatcgcaacccttagatcaatctttattgtgttacttaaattttaaaactgca 438  Q
    |||||||||| ||||| ||||| |||||||| |||| ||||| |||||||||||||| ||||||| |||||    
T  13649563 tgagagatgatagggttaaatcacaacccttggatccatcttaattgtgttacttaatttttaaatctgca 13649493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 328 - 416
Target Start/End: Original strand, 26284613 - 26284699
Alignment:
Q  328 atatatatagggcatatcaagtgagaggacctttttaaaatgagagatgagagggtgaaatcgcaacccttagatcaatctttattgtg 416  Q
    ||||||||||| |||||| |||||||  ||  |||||  ||||||||||||||||| ||||| |||||||||||| |||||||| ||||    
T  26284613 atatatataggacatatcgagtgagaccac--ttttattatgagagatgagagggttaaatcacaacccttagattaatctttaatgtg 26284699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 362 - 459
Target Start/End: Original strand, 10919418 - 10919518
Alignment:
Q  362 ttaaaatgagagatgagagggtgaaatcgcaacccttagatcaatctttattgtgttacttaaattttaaaactgcacagtataa---ttttttcattcc 458  Q
    |||||||||||||||||||||  | ||  |||||||| ||| ||||||||||||| | ||||| ||| |||||||||  ||||||   ||||||||||||    
T  10919418 ttaaaatgagagatgagagggatacataacaacccttggattaatctttattgtgctccttaattttaaaaactgcagcgtataaatcttttttcattcc 10919517  T
Q  459 c 459  Q
    |    
T  10919518 c 10919518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 368 - 438
Target Start/End: Original strand, 19138872 - 19138942
Alignment:
Q  368 tgagagatgagagggtgaaatcgcaacccttagatcaatctttattgtgttacttaaattttaaaactgca 438  Q
    |||||||||||||||| ||||| |||||||| |||| ||||| |||| ||||||| | ||||||| |||||    
T  19138872 tgagagatgagagggttaaatcacaacccttggatccatcttaattgagttacttcatttttaaatctgca 19138942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 328 - 449
Target Start/End: Original strand, 23817591 - 23817710
Alignment:
Q  328 atatatatagggcatatcaagtgagaggacctttttaaaatgagagatgagagggtgaaatcgcaacccttagatcaatctttattgtgttacttaaatt 427  Q
    ||||||||||||  |||||| |||||| ||  | |||||||||||||||||||||  | ||  ||||||||  || ||||||||||||| | ||||| ||    
T  23817591 atatatatagggtgtatcaaatgagagcac--tattaaaatgagagatgagagggatacataacaacccttgaattaatctttattgtgctccttaattt 23817688  T
Q  428 ttaaaactgcacagtataattt 449  Q
    | |||||||||  |||||||||    
T  23817689 taaaaactgcagcgtataattt 23817710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 328 - 388
Target Start/End: Original strand, 15418219 - 15418278
Alignment:
Q  328 atatatatagggcatatcaagtgagaggacctttttaaaatgagagatgagagggtgaaat 388  Q
    ||||||||| | ||| |||| ||||| ||| ||||||||||||||||||||||||||||||    
T  15418219 atatatatatgccatttcaaatgagatgac-tttttaaaatgagagatgagagggtgaaat 15418278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 328 - 373
Target Start/End: Original strand, 19790832 - 19790875
Alignment:
Q  328 atatatatagggcatatcaagtgagaggacctttttaaaatgagag 373  Q
    |||||||||||||||||||||||||||||   ||||||||||||||    
T  19790832 atatatatagggcatatcaagtgagagga--gttttaaaatgagag 19790875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 328 - 373
Target Start/End: Complemental strand, 50546114 - 50546071
Alignment:
Q  328 atatatatagggcatatcaagtgagaggacctttttaaaatgagag 373  Q
    |||||||||||||||||||||| |||||||  ||||||||||||||    
T  50546114 atatatatagggcatatcaagtaagaggac--ttttaaaatgagag 50546071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 328 - 379
Target Start/End: Complemental strand, 22914746 - 22914697
Alignment:
Q  328 atatatatagggcatatcaagtgagaggacctttttaaaatgagagatgaga 379  Q
    ||||||||||||  |||||||||||||||   ||||||||||||||||||||    
T  22914746 atatatatagggtgtatcaagtgagagga--gttttaaaatgagagatgaga 22914697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 328 - 380
Target Start/End: Original strand, 49568896 - 49568947
Alignment:
Q  328 atatatatagggcatatcaagtgagaggacctttttaaaatgagagatgagag 380  Q
    ||||||||||||||||||| |||||||||  |  |||||||||||||||||||    
T  49568896 atatatatagggcatatcatgtgagagga-gtagttaaaatgagagatgagag 49568947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0025 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0025
Description:

Target: scaffold0025; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 344 - 398
Target Start/End: Original strand, 150593 - 150645
Alignment:
Q  344 tcaagtgagaggacctttttaaaatgagagatgagagggtgaaatcgcaaccctt 398  Q
    ||||||||||||||  |||||||||||||||||||||| ||||||||||||||||    
T  150593 tcaagtgagaggac--ttttaaaatgagagatgagaggatgaaatcgcaaccctt 150645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 344 - 398
Target Start/End: Complemental strand, 13111564 - 13111512
Alignment:
Q  344 tcaagtgagaggacctttttaaaatgagagatgagagggtgaaatcgcaaccctt 398  Q
    ||||||||||||||||||  |||||||||||||||||| ||||||||||||||||    
T  13111564 tcaagtgagaggaccttt--aaaatgagagatgagaggatgaaatcgcaaccctt 13111512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 328 - 381
Target Start/End: Original strand, 22046418 - 22046470
Alignment:
Q  328 atatatatagggcatatcaagtgagaggacctttttaaaatgagagatgagagg 381  Q
    |||||||||||||||||||||||||||||  || ||||||||||||||||||||    
T  22046418 atatatatagggcatatcaagtgagagga-gttgttaaaatgagagatgagagg 22046470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 328 - 381
Target Start/End: Original strand, 22058826 - 22058878
Alignment:
Q  328 atatatatagggcatatcaagtgagaggacctttttaaaatgagagatgagagg 381  Q
    |||||||||||||||||||||||||||||  || ||||||||||||||||||||    
T  22058826 atatatatagggcatatcaagtgagagga-gttgttaaaatgagagatgagagg 22058878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 385 - 452
Target Start/End: Complemental strand, 18094466 - 18094399
Alignment:
Q  385 aaatcgcaacccttagatcaatctttattgtgttacttaaattttaaaactgcacagtataatttttt 452  Q
    ||||| ||||||||| ||| |||||||||||||||||| | |||||||||||||   |||||||||||    
T  18094466 aaatcacaacccttaaatccatctttattgtgttacttcatttttaaaactgcagcctataatttttt 18094399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 328 - 381
Target Start/End: Complemental strand, 22047264 - 22047212
Alignment:
Q  328 atatatatagggcatatcaagtgagaggacctttttaaaatgagagatgagagg 381  Q
    ||||||||||| |||||||||||||||||  || ||||||||||||||||||||    
T  22047264 atatatataggacatatcaagtgagagga-attgttaaaatgagagatgagagg 22047212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 340 - 381
Target Start/End: Complemental strand, 1859837 - 1859797
Alignment:
Q  340 catatcaagtgagaggacctttttaaaatgagagatgagagg 381  Q
    |||||||||||||||||| |||| ||||||||||||||||||    
T  1859837 catatcaagtgagaggacatttt-aaaatgagagatgagagg 1859797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 328 - 459
Target Start/End: Complemental strand, 43448575 - 43448444
Alignment:
Q  328 atatatatagggcatatcaagtgagaggacctttttaaaatgagaga-tgagagggtgaaatcgcaacccttagatcaatctttattgtgttacttaaat 426  Q
    ||||||||||| ||| |||| ||||||||||||||  |||||||||  ||||||| | ||||| ||||||||  ||| |||||||||||||| ||| | |    
T  43448575 atatatataggacatttcaaatgagaggacctttt--aaatgagagggtgagaggattaaatcacaacccttgaatccatctttattgtgttgcttcatt 43448478  T
Q  427 tttaaaactgcacagtataattt-tttcattccc 459  Q
    ||||||| ||||   |||||||| ||||||||||    
T  43448477 tttaaaattgcagcctataatttgtttcattccc 43448444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 328 - 381
Target Start/End: Complemental strand, 41115547 - 41115495
Alignment:
Q  328 atatatatagggcatatcaagtgagaggacctttttaaaatgagagatgagagg 381  Q
    |||||||||||||||||||||||||||||  || ||||||||||||||||||||    
T  41115547 atatatatagggcatatcaagtgagagga-gttgttaaaatgagagatgagagg 41115495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 342 - 412
Target Start/End: Complemental strand, 29065470 - 29065401
Alignment:
Q  342 tatcaagtgagaggacctttttaaaatgagagatgagagggtgaaatcgcaacccttagatcaatctttat 412  Q
    |||||||||||||||  || |||||||||||  ||||||||| ||||| |||||||| |||||||| ||||    
T  29065470 tatcaagtgagaggag-ttcttaaaatgagaagtgagagggttaaatcacaacccttggatcaatcattat 29065401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 328 - 405
Target Start/End: Original strand, 17917082 - 17917157
Alignment:
Q  328 atatatatagggcatatcaagtgagaggacctttttaaaatgagagatgagagggtgaaatcgcaacccttagatcaa 405  Q
    |||||||||||   |||||| |||||| || | ||||||||||||| ||||||||| ||||| |||||||||||||||    
T  17917082 atatatataggatgtatcaaatgagagcac-tatttaaaatgagag-tgagagggttaaatcacaacccttagatcaa 17917157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 328 - 377
Target Start/End: Complemental strand, 44545320 - 44545272
Alignment:
Q  328 atatatatagggcatatcaagtgagaggacctttttaaaatgagagatga 377  Q
    |||||||||||||||||||||||||| ||  || ||||||||||||||||    
T  44545320 atatatatagggcatatcaagtgagatga-gttgttaaaatgagagatga 44545272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 328 - 431
Target Start/End: Original strand, 3772588 - 3772688
Alignment:
Q  328 atatatatagggcatatcaagtgagaggacctttttaaaatgagagatgagagggtgaaatcgcaacccttagatcaatctttattgtgttacttaaatt 427  Q
    ||||||| |||||||||||| |||||||   ||||||   |||||||||||||||| | |||   ||| |||||| ||||||||||||||| ||| ||||    
T  3772588 atatatagagggcatatcaaatgagaggt--tttttattgtgagagatgagagggttagatcctgaccattagattaatctttattgtgtt-ctttaatt 3772684  T
Q  428 ttaa 431  Q
    ||||    
T  3772685 ttaa 3772688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 37; Significance: 0.00000000001; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 328 - 415
Target Start/End: Original strand, 22798485 - 22798570
Alignment:
Q  328 atatatatagggcatatcaagtgagaggacctttttaaaatgagagatgagagggtgaaatcgcaacccttagatcaatctttattgt 415  Q
    |||||||||||   |||||| ||||||||| ||||  |||||||| |||||||||  ||||| |||||||||||| ||||||||||||    
T  22798485 atatatataggatgtatcaaatgagaggacatttt--aaatgagaaatgagagggataaatctcaacccttagattaatctttattgt 22798570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 328 - 373
Target Start/End: Complemental strand, 33574082 - 33574039
Alignment:
Q  328 atatatatagggcatatcaagtgagaggacctttttaaaatgagag 373  Q
    ||||||||||||||||||||||||||||||  ||||||||||||||    
T  33574082 atatatatagggcatatcaagtgagaggac--ttttaaaatgagag 33574039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 328 - 388
Target Start/End: Original strand, 18861883 - 18861941
Alignment:
Q  328 atatatatagggcatatcaagtgagaggacctttttaaaatgagagatgagagggtgaaat 388  Q
    ||||||||| ||||| ||||||||||||||  |||||||||||||| ||||||||| ||||    
T  18861883 atatatatatggcatttcaagtgagaggac--ttttaaaatgagaggtgagagggttaaat 18861941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 328 - 431
Target Start/End: Complemental strand, 22967243 - 22967143
Alignment:
Q  328 atatatatagggcatatcaagtgagaggacctttttaaaatgagagatgagagggtgaaatcgcaacccttagatcaatctttattgtgttacttaaatt 427  Q
    ||||||||||||||||||||||||||||   ||||||   |||||||||||||||| | |||   ||| |||||| ||| ||||||||||| ||| ||||    
T  22967243 atatatatagggcatatcaagtgagagg--ttttttattgtgagagatgagagggttagatcctgaccattagattaatttttattgtgtt-ctttaatt 22967147  T
Q  428 ttaa 431  Q
    ||||    
T  22967146 ttaa 22967143  T

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Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 328 - 357
Target Start/End: Complemental strand, 10470902 - 10470873
Alignment:
Q  328 atatatatagggcatatcaagtgagaggac 357  Q
    ||||||||||||||||||||||||||||||    
T  10470902 atatatatagggcatatcaagtgagaggac 10470873  T

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Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 368 - 413
Target Start/End: Original strand, 39933462 - 39933507
Alignment:
Q  368 tgagagatgagagggtgaaatcgcaacccttagatcaatctttatt 413  Q
    |||||||||||||||| |||||  ||||||| ||||||||||||||    
T  39933462 tgagagatgagagggttaaatcataaccctttgatcaatctttatt 39933507  T

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Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 328 - 356
Target Start/End: Original strand, 41609497 - 41609525
Alignment:
Q  328 atatatatagggcatatcaagtgagagga 356  Q
    |||||||||||||||||||||||||||||    
T  41609497 atatatatagggcatatcaagtgagagga 41609525  T

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Target: scaffold0006 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 368 - 438
Target Start/End: Complemental strand, 139343 - 139273
Alignment:
Q  368 tgagagatgagagggtgaaatcgcaacccttagatcaatctttattgtgttacttaaattttaaaactgca 438  Q
    |||||||||||||||| ||||| |||||||| |||| ||||| |||| ||||||| | ||||||| |||||    
T  139343 tgagagatgagagggttaaatcacaacccttggatccatcttaattgagttacttcatttttaaatctgca 139273  T

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Target: scaffold1370 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold1370
Description:

Target: scaffold1370; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 328 - 389
Target Start/End: Complemental strand, 969 - 910
Alignment:
Q  328 atatatatagggcatatcaagtgagaggacctttttaaaatgagagatgagagggtgaaatc 389  Q
    ||||||| ||||  |||||||||||||||   |||||||||||||||||||||||| |||||    
T  969 atatatagagggtgtatcaagtgagaggaa--ttttaaaatgagagatgagagggttaaatc 910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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