View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10166_high_2 (Length: 392)
Name: NF10166_high_2
Description: NF10166
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10166_high_2 |
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Alignment Details
Target: chr3 (Bit Score: 364; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 364; E-Value: 0
Query Start/End: Original strand, 7 - 382
Target Start/End: Original strand, 46229419 - 46229794
Alignment:
| Q |
7 |
ccaattgcttcgggccaggccttcaacattggcaactacatagtccgtgttaaaatcggaacacccggtcaactcctcttcatggtccttgacacaagca |
106 |
Q |
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| T |
46229419 |
ccaattgcttcgggccaggccttcaacattggcaactacatagtccgtgttaaaatcggaacacccggtcaactcctcttcatggtccttgacacaagca |
46229518 |
T |
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| Q |
107 |
ccgacgaggcttttatccctagctctggctgcattggttgctccgcaacaactttctcgcccaatgcctccaccacttatgtgccattggagtgttccgt |
206 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||| |
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| T |
46229519 |
ccgacgaggcttttatccctagctctggctgcattggttgctccgcaacaactttctcacccaatgcctccaccagttatgtgccattggagtgttccgt |
46229618 |
T |
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| Q |
207 |
tccacaatgcagtcaggtccgtgggctctcatgtccagccacgggctctggcgcatgttccttcaacaaatcttacgcaggttcgacttactctgccaca |
306 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46229619 |
tccacaatgcagtcaggtccgtgggctctcatgtccagccacgggctctggcgcatgttccttcaacaaatcttacgcaggttcgacttactctgccaca |
46229718 |
T |
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| Q |
307 |
cttgttcaagattcacttagattagctacggatgttatccctagcttctcttttggatccatcaatgctatctctg |
382 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
46229719 |
cttgttcaagattcacttagattagctacggatgttatccctagctactcttttggatccatcaatgctatctctg |
46229794 |
T |
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