View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10166_low_1 (Length: 868)

Name: NF10166_low_1
Description: NF10166
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10166_low_1
NF10166_low_1
[»] chr8 (9 HSPs)
chr8 (330-659)||(38611715-38612044)
chr8 (13-164)||(38613476-38613627)
chr8 (156-286)||(38612088-38612218)
chr8 (718-847)||(38611445-38611569)
chr8 (591-655)||(34722165-34722229)
chr8 (771-847)||(34726772-34726843)
chr8 (771-844)||(34730951-34731019)
chr8 (773-836)||(34721655-34721713)
chr8 (595-657)||(34731457-34731519)
[»] chr3 (1 HSPs)
chr3 (210-260)||(14667244-14667294)
[»] chr1 (1 HSPs)
chr1 (210-260)||(1012494-1012544)


Alignment Details
Target: chr8 (Bit Score: 253; Significance: 1e-140; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 330 - 659
Target Start/End: Complemental strand, 38612044 - 38611715
Alignment:
Q  330 cacttacatggtattgcaaaaacacatatattagtttgaaattgaaaggggaacatgaaatgaaaagttgaccttctccttccgattacaaaaatacatg 429  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  38612044 cacttacatggtattgcaaaaacacatatattagtttgaaattgaaaggggagcatgaaatgaaaagttgaccttctccttccgattacaaaaatacatg 38611945  T
Q  430 ttattcccgacctgcatagttattatacaagtaagttaagagtaaattattggaaacaaaaacattgagatatcaacagccannnnnnnnnnnnnnnnnn 529  Q
     ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||                      
T  38611944 gtattccccacctgcatagttattatacaagtaagttaagagtaaattattggaaacaaaaacattgagatatccacagccagtttgttgttgttgttgt 38611845  T
Q  530 nacgctagattttgaggtgaaggactgaagtggttgttttagctcttatcaaattcacgggtctacatcaaggagttctaaatcagattcaaacagttca 629  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38611844 tacgctagattttgaggtgaaggactgaagtggttgttttagctcttatcaaattcacgggtctacatcaaggagttctaaatcagattcaaacagttca 38611745  T
Q  630 tcttcaattagggatattagcaaaacattt 659  Q
    || |||||||||||||||||||||||||||    
T  38611744 tcatcaattagggatattagcaaaacattt 38611715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 140; E-Value: 7e-73
Query Start/End: Original strand, 13 - 164
Target Start/End: Complemental strand, 38613627 - 38613476
Alignment:
Q  13 cagagatgatgatgatggccaaacttgctacgagatagaaaaataaataaaagtagagaacaaagaaggagatggaacggcaccttcagatatgaagttc 112  Q
    |||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38613627 cagagaagatgatgatggccaaacttgttacgagatagaaaaataaataaaagtagagaacaaagaaggagatggaacggcaccttcagatatgaagttc 38613528  T
Q  113 ctgaatttgttggcaaagcaaaggagctctgtgaaatatttagtaagaatta 164  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  38613527 ctgaatttgttggcaaagcaaaggagctctgtggaatatttagtaagaatta 38613476  T

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Target: chr8; HSP #3
Raw Score: 127; E-Value: 4e-65
Query Start/End: Original strand, 156 - 286
Target Start/End: Complemental strand, 38612218 - 38612088
Alignment:
Q  156 taagaattaacatcagatcattttctaaacaggaaaaatacaagagataacaccaataataacggcaccagaagaatgagcgaaggtgttgggcattgta 255  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38612218 taagaattaacatcagatcattttctaaacagaaaaaatacaagagataacaccaataataacggcaccagaagaatgagcgaaggtgttgggcattgta 38612119  T
Q  256 atttaaaagtgaggtgcaaatgtaagggcgt 286  Q
    |||||||||||||||||||||||||||||||    
T  38612118 atttaaaagtgaggtgcaaatgtaagggcgt 38612088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 718 - 847
Target Start/End: Complemental strand, 38611569 - 38611445
Alignment:
Q  718 gtccgccatgctgcctgtttgaaagttgtgtggtcttgacctttcatcggccaagcacatcattaaaagttaatactactatactactcaatctgaataa 817  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||     ||||||||||||||||||    
T  38611569 gtccgccatgctgcctgtttgaaagttgtgtggtcttgacctttcatcagccaagcacatcattaaaagttaatact-----actactcaatctgaataa 38611475  T
Q  818 acttgctgtcttttttggatggtgttgaat 847  Q
    ||||||||||||||||||||||||||||||    
T  38611474 acttgctgtcttttttggatggtgttgaat 38611445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 591 - 655
Target Start/End: Complemental strand, 34722229 - 34722165
Alignment:
Q  591 tctacatcaaggagttctaaatcagattcaaacagttcatcttcaattagggatattagcaaaac 655  Q
    ||||||||| ||||||| ||||||||||||| |||||||||  ||| ||||||||||||||||||    
T  34722229 tctacatcagggagttcgaaatcagattcaatcagttcatcaccaactagggatattagcaaaac 34722165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 771 - 847
Target Start/End: Complemental strand, 34726843 - 34726772
Alignment:
Q  771 agcacatcattaaaagttaatactactatactactcaatctgaataaacttgctgtcttttttggatggtgttgaat 847  Q
    |||||||||||||||||||||| || ||     |||||||||| | |||||||||||||||||||||||||||||||    
T  34726843 agcacatcattaaaagttaatattaata-----ctcaatctgattcaacttgctgtcttttttggatggtgttgaat 34726772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 771 - 844
Target Start/End: Complemental strand, 34731019 - 34730951
Alignment:
Q  771 agcacatcattaaaagttaatactactatactactcaatctgaataaacttgctgtcttttttggatggtgttg 844  Q
    |||||||||||| |||||||||      ||||||||| ||||| |||||||||||||||||||| |||||||||    
T  34731019 agcacatcattataagttaata-----ttactactcagtctgattaaacttgctgtcttttttgaatggtgttg 34730951  T

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Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 773 - 836
Target Start/End: Complemental strand, 34721713 - 34721655
Alignment:
Q  773 cacatcattaaaagttaatactactatactactcaatctgaataaacttgctgtcttttttgga 836  Q
    ||||||||||||||||||||      ||||||||||||||| | ||||||||||||||||||||    
T  34721713 cacatcattaaaagttaata-----ttactactcaatctgattcaacttgctgtcttttttgga 34721655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 595 - 657
Target Start/End: Complemental strand, 34731519 - 34731457
Alignment:
Q  595 catcaaggagttctaaatcagattcaaacagttcatcttcaattagggatattagcaaaacat 657  Q
    ||||||||||||| ||||||| |||||| |||||||| | || |||| ||| |||||||||||    
T  34731519 catcaaggagttcaaaatcagcttcaaatagttcatcgttaaataggaataatagcaaaacat 34731457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 31; Significance: 0.00000008; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 210 - 260
Target Start/End: Complemental strand, 14667294 - 14667244
Alignment:
Q  210 aataataacggcaccagaagaatgagcgaaggtgttgggcattgtaattta 260  Q
    |||||||||| | |||||||||||||  |||||||| ||||||||||||||    
T  14667294 aataataacgccgccagaagaatgaggaaaggtgttaggcattgtaattta 14667244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 31; Significance: 0.00000008; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 210 - 260
Target Start/End: Complemental strand, 1012544 - 1012494
Alignment:
Q  210 aataataacggcaccagaagaatgagcgaaggtgttgggcattgtaattta 260  Q
    |||||||||| | |||||||||||||  |||||||| ||||||||||||||    
T  1012544 aataataacgccgccagaagaatgaggaaaggtgttaggcattgtaattta 1012494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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