View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10166_low_10 (Length: 291)
Name: NF10166_low_10
Description: NF10166
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10166_low_10 |
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Alignment Details
Target: chr1 (Bit Score: 250; Significance: 1e-139; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 1 - 282
Target Start/End: Complemental strand, 19989023 - 19988742
Alignment:
| Q |
1 |
tcactttcacccgacactactcgatttcttcttttatgtcttcccaacaagacaaccacatacgcagacaaattccaccaatttcttcaatttgaacaca |
100 |
Q |
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| T |
19989023 |
tcactttcacccgacactactcgatttcttcttttatgtcttcctaacaagacaaccacatacacacacaaattccaccaatttcttcaatttgaacaca |
19988924 |
T |
|
| Q |
101 |
ttcattcatgggttgtccgatctcaaaaaaccttaccatagttgtcaaaaattccgaggaccaccattctaattcttcacaagtttcaaaagctatgtct |
200 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
19988923 |
ttcattcatgggttgtccagtctcaaaaaaccttaccatagttgttaaaaattccgaggacaaccattctaattcttcacaagtttcaaaagctatgtct |
19988824 |
T |
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| Q |
201 |
ctcccaatgcctcttgtgcatcatcctccaacaagaaaaggtgatactcatcaccttgtttccctcacctccaccacctatg |
282 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19988823 |
ctcccaatgcctcttgtgcatcaccctccaacaagaaaaggtgatactcatcaccttgtttccctcacctccaccacctatg |
19988742 |
T |
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Target: chr7 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 188 - 282
Target Start/End: Complemental strand, 35420901 - 35420807
Alignment:
| Q |
188 |
aaaagctatgtctctcccaatgcctcttgtgcatcatcctccaacaagaaaaggtgatactcatcaccttgtttccctcacctccaccacctatg |
282 |
Q |
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||||||| |||| || ||||||||||| | ||||| |||||||| | ||||||||| ||||||||||||||||| ||||| ||||| ||||||| |
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| T |
35420901 |
aaaagctttgtcccttacaatgcctcttatccatcaccctccaaccaaaaaaggtgacactcatcaccttgtttcactcacttccactacctatg |
35420807 |
T |
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