View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10166_low_11 (Length: 290)

Name: NF10166_low_11
Description: NF10166
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10166_low_11
NF10166_low_11
[»] chr7 (1 HSPs)
chr7 (8-274)||(45142441-45142707)


Alignment Details
Target: chr7 (Bit Score: 263; Significance: 1e-147; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 263; E-Value: 1e-147
Query Start/End: Original strand, 8 - 274
Target Start/End: Complemental strand, 45142707 - 45142441
Alignment:
Q  8 aatgattttgaggacatttgttttctaatttatcaccataaaattaacagagatttaataacttgtttaatagtactctgtcaaatatttgaagattctt 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45142707 aatgattttgaggacatttgttttctaatttatcaccataaaattaacagagatttaataacttgtttaatagtactctgtcaaatatttgaagattctt 45142608  T
Q  108 cagtgcaaggatttagtgacttgttaatcacttttttcttttaagtttgtaactactttgtaaatgatcaagttcaaaccaatcagcaacttgtcaagta 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45142607 cagtgcaaggatttagtgacttgttaatcacttttttcttttaagtttgtaactactttgtaaatgatcaagttcaaaccaatcagcaacttgtcaagta 45142508  T
Q  208 ctcaagttcatgaatgatacctctcagccatatagcttctttgattgcttcatcaagacttgaatct 274  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  45142507 ctcaagttcatgaatgatacctctcagccatatagcttctttgattgcttcatcaagacttcaatct 45142441  T

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