View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10166_low_14 (Length: 246)
Name: NF10166_low_14
Description: NF10166
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10166_low_14 |
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Alignment Details
Target: chr4 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 232
Target Start/End: Complemental strand, 38833685 - 38833450
Alignment:
| Q |
1 |
tccatctggaccctaaaaatgccaagtttaatttttggttagtggcgtgtatcaatcaaaattaatttgtacacattcaccgtgtaaaacaaattacact |
100 |
Q |
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| T |
38833685 |
tccatctggaccctaaaaatgccaagtttaatttttggttagtggcgtgtaccaatcaaaattaatttgtacacattcaccgtgtaaaacaaattacact |
38833586 |
T |
|
| Q |
101 |
ataatgtcactttcttaaattagttttt----taccctgtgaggtttgcagggaagatcccaccattgatctccatttccttcaatggttcctgtaccat |
196 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38833585 |
ataatgtcactttcttaaattagttttttacgtaccctgtgaggtttgcagggaagatcccaccattgatctccatttccttcaatggttcctgtaccat |
38833486 |
T |
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| Q |
197 |
taagactcatttggtcaagtttatagaacacaagcc |
232 |
Q |
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|||||||||||||||||||||||||||||||||||| |
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| T |
38833485 |
taagactcatttggtcaagtttatagaacacaagcc |
38833450 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 128 - 232
Target Start/End: Original strand, 12318117 - 12318221
Alignment:
| Q |
128 |
ttaccctgtgaggtttgcagggaagatcccaccattgatctccatttccttcaatggttcctgtaccattaagactcatttggtcaagtttatagaacac |
227 |
Q |
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||||||| ||||||||||| ||||||||||||||||| |||||||| |||||||| |||| || ||||| ||| ||||||| |||||| |||| ||||| |
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| T |
12318117 |
ttaccctatgaggtttgcaaggaagatcccaccattgttctccattgccttcaataattccagtcccatttagagtcatttgatcaagtctataaaacac |
12318216 |
T |
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| Q |
228 |
aagcc |
232 |
Q |
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||||| |
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| T |
12318217 |
aagcc |
12318221 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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